Issues

New issue

new in GECKO 3.2.0: protein usage reactions always draw from protein pool, also when proteomics is integrated
#375 · edkerk opened on May 8, 2024
4

Zero out unmeasured isoenzymes with a measured sibling, and report coverage
SysBioChalmers/GECKO#480 · opened on Sep 10, 2026
2
Keep measured-zero enzyme concentrations distinct from missing data
SysBioChalmers/GECKO#479 · opened on Sep 10, 2026
1
Record GECKO version in exported YAML models
SysBioChalmers/GECKO#478 · opened on Sep 10, 2026 · v4.0.0b2
Consider MATLAB Live Scripts for the tutorial protocols
SysBioChalmers/GECKO#472 · opened on Sep 1, 2026
Testing version of bayesianSensitivityTuning
SysBioChalmers/GECKO#409 · opened on Nov 19, 2025
7
DLKcat on Mac with Apple Silicon (arm64 architecture)
SysBioChalmers/GECKO#393 · opened on Oct 9, 2024
15
Bug detected: model.summary does not match expected phenotype for ecYeastGEM.xml for different carbon sources
SysBioChalmers/GECKO#368 · opened on Mar 18, 2024
2
convert the manual tests to run with GH actions
SysBioChalmers/GECKO#269 · opened on Mar 6, 2023
feat: universal DLKcat.tsv for both light and full ecModels
SysBioChalmers/GECKO#248 · opened on Feb 28, 2023
8
chore: consistent names and terminology
SysBioChalmers/GECKO#229 · opened on Feb 22, 2023
1
refactor: update general kcat database
SysBioChalmers/GECKO#157 · opened on May 25, 2022
6
Check predicted growth rate by ecYeastGEM
SysBioChalmers/GECKO#131 · opened on Feb 1, 2021
gecko.py: constrain_pool() not working with cobra 0.17.1 version
SysBioChalmers/GECKO#94 · opened on Feb 3, 2020
feat: new EC main class 7 introduced in BRENDA
SysBioChalmers/GECKO#79 · opened on Sep 2, 2019
problems in manualModifications.m
SysBioChalmers/GECKO#72 · opened on Jun 11, 2019
fix: adjust_pool_bounds fails for more than 1 protein
SysBioChalmers/GECKO#36 · opened on Jul 18, 2018