diff --git a/DESCRIPTION b/DESCRIPTION index 002d271..067a87a 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -17,7 +17,6 @@ Description: The package uses testthat to run all tests that cannot be made dire License: file LICENSE Encoding: UTF-8 LazyData: true -RoxygenNote: 7.2.1 Imports: SticsRPacks, SticsRFiles, @@ -115,3 +114,4 @@ BinaryFiles: inst/stics/V90/bin/jre7/bin/w2k_lsa_auth.dll, inst/stics/V90/bin/jre7/bin/wsdetect.dll, inst/stics/V90/bin/jre7/bin/zip.dll +Config/roxygen2/version: 8.0.0 diff --git a/inst/stics/V10.1.0/custom_exe/stics_custom.exe b/inst/stics/V10.1.0/custom_exe/stics_custom.exe new file mode 100644 index 0000000..12db4f9 Binary files /dev/null and b/inst/stics/V10.1.0/custom_exe/stics_custom.exe differ diff --git a/inst/stics/V10.1.0/custom_exe/stics_custom_lin b/inst/stics/V10.1.0/custom_exe/stics_custom_lin new file mode 100644 index 0000000..7a71e9e Binary files /dev/null and b/inst/stics/V10.1.0/custom_exe/stics_custom_lin differ diff --git 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can use a different file by specifying a filename +# with the java.util.logging.config.file system property. +# For example, java -Djava.util.logging.config.file=myfile +############################################################ + +############################################################ +# Global properties +############################################################ + +# "handlers" specifies a comma-separated list of log Handler +# classes. These handlers will be installed during VM startup. +# Note that these classes must be on the system classpath. +# By default we only configure a ConsoleHandler, which will only +# show messages at the INFO and above levels. +handlers= java.util.logging.ConsoleHandler + +# To also add the FileHandler, use the following line instead. +#handlers= java.util.logging.FileHandler, java.util.logging.ConsoleHandler + +# Default global logging level. +# This specifies which kinds of events are logged across +# all loggers. For any given facility this global level +# can be overridden by a facility-specific level +# Note that the ConsoleHandler also has a separate level +# setting to limit messages printed to the console. +.level= INFO + +############################################################ +# Handler specific properties. +# Describes specific configuration info for Handlers. +############################################################ + +# default file output is in user's home directory. +java.util.logging.FileHandler.pattern = %h/java%u.log +java.util.logging.FileHandler.limit = 50000 +java.util.logging.FileHandler.count = 1 +# Default number of locks FileHandler can obtain synchronously. +# This specifies maximum number of attempts to obtain lock file by FileHandler +# implemented by incrementing the unique field %u as per FileHandler API documentation. +java.util.logging.FileHandler.maxLocks = 100 +java.util.logging.FileHandler.formatter = java.util.logging.XMLFormatter + +# Limit the messages that are printed on the console to INFO and above. +java.util.logging.ConsoleHandler.level = INFO +java.util.logging.ConsoleHandler.formatter = java.util.logging.SimpleFormatter + +# Example to customize the SimpleFormatter output format +# to print one-line log message like this: +# : [] +# +# java.util.logging.SimpleFormatter.format=%4$s: %5$s [%1$tc]%n + +############################################################ +# Facility-specific properties. +# Provides extra control for each logger. +############################################################ + +# For example, set the com.xyz.foo logger to only log SEVERE +# messages: +# com.xyz.foo.level = SEVERE diff --git a/inst/stics/V11.0.0/bin/jre17/conf/net.properties b/inst/stics/V11.0.0/bin/jre17/conf/net.properties new file mode 100644 index 0000000..4e64aaf --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/conf/net.properties @@ -0,0 +1,151 @@ +############################################################ +# Default Networking Configuration File +# +# This file may contain default values for the networking system properties. +# These values are only used when the system properties are not specified +# on the command line or set programmatically. +# For now, only the various proxy settings can be configured here. +############################################################ + +# Whether or not the DefaultProxySelector will default to System Proxy +# settings when they do exist. +# Set it to 'true' to enable this feature and check for platform +# specific proxy settings +# Note that the system properties that do explicitly set proxies +# (like http.proxyHost) do take precedence over the system settings +# even if java.net.useSystemProxies is set to true. + +java.net.useSystemProxies=false + +#------------------------------------------------------------------------ +# Proxy configuration for the various protocol handlers. +# DO NOT uncomment these lines if you have set java.net.useSystemProxies +# to true as the protocol specific properties will take precedence over +# system settings. +#------------------------------------------------------------------------ + +# HTTP Proxy settings. proxyHost is the name of the proxy server +# (e.g. proxy.mydomain.com), proxyPort is the port number to use (default +# value is 80) and nonProxyHosts is a '|' separated list of hostnames which +# should be accessed directly, ignoring the proxy server (default value is +# localhost & 127.0.0.1). +# +# http.proxyHost= +# http.proxyPort=80 +http.nonProxyHosts=localhost|127.*|[::1] +# +# HTTPS Proxy Settings. proxyHost is the name of the proxy server +# (e.g. proxy.mydomain.com), proxyPort is the port number to use (default +# value is 443). The HTTPS protocol handlers uses the http nonProxyHosts list. +# +# https.proxyHost= +# https.proxyPort=443 +# +# FTP Proxy settings. proxyHost is the name of the proxy server +# (e.g. proxy.mydomain.com), proxyPort is the port number to use (default +# value is 80) and nonProxyHosts is a '|' separated list of hostnames which +# should be accessed directly, ignoring the proxy server (default value is +# localhost & 127.0.0.1). +# +# ftp.proxyHost= +# ftp.proxyPort=80 +ftp.nonProxyHosts=localhost|127.*|[::1] +# +# Socks proxy settings. socksProxyHost is the name of the proxy server +# (e.g. socks.domain.com), socksProxyPort is the port number to use +# (default value is 1080) +# +# socksProxyHost= +# socksProxyPort=1080 +# +# HTTP Keep Alive settings. remainingData is the maximum amount of data +# in kilobytes that will be cleaned off the underlying socket so that it +# can be reused (default value is 512K), queuedConnections is the maximum +# number of Keep Alive connections to be on the queue for clean up (default +# value is 10). +# http.KeepAlive.remainingData=512 +# http.KeepAlive.queuedConnections=10 + +# Authentication Scheme restrictions for HTTP and HTTPS. +# +# In some environments certain authentication schemes may be undesirable +# when proxying HTTP or HTTPS. For example, "Basic" results in effectively the +# cleartext transmission of the user's password over the physical network. +# This section describes the mechanism for disabling authentication schemes +# based on the scheme name. Disabled schemes will be treated as if they are not +# supported by the implementation. +# +# The 'jdk.http.auth.tunneling.disabledSchemes' property lists the authentication +# schemes that will be disabled when tunneling HTTPS over a proxy, HTTP CONNECT. +# The 'jdk.http.auth.proxying.disabledSchemes' property lists the authentication +# schemes that will be disabled when proxying HTTP. +# +# In both cases the property is a comma-separated list of, case-insensitive, +# authentication scheme names, as defined by their relevant RFCs. An +# implementation may, but is not required to, support common schemes whose names +# include: 'Basic', 'Digest', 'NTLM', 'Kerberos', 'Negotiate'. A scheme that +# is not known, or not supported, by the implementation is ignored. +# +# Note: This property is currently used by the JDK Reference implementation. It +# is not guaranteed to be examined and used by other implementations. +# +#jdk.http.auth.proxying.disabledSchemes= +jdk.http.auth.tunneling.disabledSchemes=Basic + +# +# Allow restricted HTTP request headers +# +# By default, the following request headers are not allowed to be set by user code +# in HttpRequests: "connection", "content-length", "expect", "host" and "upgrade". +# The 'jdk.httpclient.allowRestrictedHeaders' property allows one or more of these +# headers to be specified as a comma separated list to override the default restriction. +# The names are case-insensitive and white-space is ignored (removed before processing +# the list). Note, this capability is mostly intended for testing and isn't expected +# to be used in real deployments. Protocol errors or other undefined behavior is likely +# to occur when using them. The property is not set by default. +# Note also, that there may be other headers that are restricted from being set +# depending on the context. This includes the "Authorization" header when the +# relevant HttpClient has an authenticator set. These restrictions cannot be +# overridden by this property. +# +# jdk.httpclient.allowRestrictedHeaders=host +# +# +# Transparent NTLM HTTP authentication mode on Windows. Transparent authentication +# can be used for the NTLM scheme, where the security credentials based on the +# currently logged in user's name and password can be obtained directly from the +# operating system, without prompting the user. This property has three possible +# values which regulate the behavior as shown below. Other unrecognized values +# are handled the same as 'disabled'. Note, that NTLM is not considered to be a +# strongly secure authentication scheme and care should be taken before enabling +# this mechanism. +# +# Transparent authentication never used. +#jdk.http.ntlm.transparentAuth=disabled +# +# Enabled for all hosts. +#jdk.http.ntlm.transparentAuth=allHosts +# +# Enabled for hosts that are trusted in Windows Internet settings +#jdk.http.ntlm.transparentAuth=trustedHosts +# +jdk.http.ntlm.transparentAuth=disabled +# +# Default directory where automatically bound Unix domain server +# sockets are stored. Sockets are automatically bound when bound +# with a null address. +# +# The search order for the directory on Windows is: +# +# 1. System property "jdk.net.unixdomain.tmpdir" +# +# 2. Networking property "jdk.net.unixdomain.tmpdir" specified +# in this file (not set by default) +# +# 3. The TEMP environment variable (the effective default) +# +# 4. The java.io.tmpdir system property +# +#jdk.net.unixdomain.tmpdir= +# + diff --git a/inst/stics/V11.0.0/bin/jre17/conf/security/java.policy b/inst/stics/V11.0.0/bin/jre17/conf/security/java.policy new file mode 100644 index 0000000..1554541 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/conf/security/java.policy @@ -0,0 +1,44 @@ +// +// This system policy file grants a set of default permissions to all domains +// and can be configured to grant additional permissions to modules and other +// code sources. The code source URL scheme for modules linked into a +// run-time image is "jrt". +// +// For example, to grant permission to read the "foo" property to the module +// "com.greetings", the grant entry is: +// +// grant codeBase "jrt:/com.greetings" { +// permission java.util.PropertyPermission "foo", "read"; +// }; +// + +// default permissions granted to all domains +grant { + // allows anyone to listen on dynamic ports + permission java.net.SocketPermission "localhost:0", "listen"; + + // "standard" properies that can be read by anyone + permission java.util.PropertyPermission "java.version", "read"; + permission java.util.PropertyPermission "java.vendor", "read"; + permission java.util.PropertyPermission "java.vendor.url", "read"; + permission java.util.PropertyPermission "java.class.version", "read"; + permission java.util.PropertyPermission "os.name", "read"; + permission java.util.PropertyPermission "os.version", "read"; + permission java.util.PropertyPermission "os.arch", "read"; + permission java.util.PropertyPermission "file.separator", "read"; + permission java.util.PropertyPermission "path.separator", "read"; + permission java.util.PropertyPermission "line.separator", "read"; + permission java.util.PropertyPermission + "java.specification.version", "read"; + permission java.util.PropertyPermission "java.specification.vendor", "read"; + permission java.util.PropertyPermission "java.specification.name", "read"; + permission java.util.PropertyPermission + "java.vm.specification.version", "read"; + permission java.util.PropertyPermission + "java.vm.specification.vendor", "read"; + permission java.util.PropertyPermission + "java.vm.specification.name", "read"; + permission java.util.PropertyPermission "java.vm.version", "read"; + permission java.util.PropertyPermission "java.vm.vendor", "read"; + permission java.util.PropertyPermission "java.vm.name", "read"; +}; diff --git a/inst/stics/V11.0.0/bin/jre17/conf/security/java.security b/inst/stics/V11.0.0/bin/jre17/conf/security/java.security new file mode 100644 index 0000000..5c709de --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/conf/security/java.security @@ -0,0 +1,1361 @@ +# +# This is the "master security properties file". +# +# An alternate java.security properties file may be specified +# from the command line via the system property +# +# -Djava.security.properties= +# +# This properties file appends to the master security properties file. +# If both properties files specify values for the same key, the value +# from the command-line properties file is selected, as it is the last +# one loaded. +# +# Also, if you specify +# +# -Djava.security.properties== (2 equals), +# +# then that properties file completely overrides the master security +# properties file. +# +# To disable the ability to specify an additional properties file from +# the command line, set the key security.overridePropertiesFile +# to false in the master security properties file. It is set to true +# by default. +# +# If this properties file fails to load, the JDK implementation will throw +# an unspecified error when initializing the java.security.Security class. + +# In this file, various security properties are set for use by +# java.security classes. This is where users can statically register +# Cryptography Package Providers ("providers" for short). The term +# "provider" refers to a package or set of packages that supply a +# concrete implementation of a subset of the cryptography aspects of +# the Java Security API. A provider may, for example, implement one or +# more digital signature algorithms or message digest algorithms. +# +# Each provider must implement a subclass of the Provider class. +# To register a provider in this master security properties file, +# specify the provider and priority in the format +# +# security.provider.= +# +# This declares a provider, and specifies its preference +# order n. The preference order is the order in which providers are +# searched for requested algorithms (when no specific provider is +# requested). The order is 1-based; 1 is the most preferred, followed +# by 2, and so on. +# +# must specify the name of the Provider as passed to its super +# class java.security.Provider constructor. This is for providers loaded +# through the ServiceLoader mechanism. +# +# must specify the subclass of the Provider class whose +# constructor sets the values of various properties that are required +# for the Java Security API to look up the algorithms or other +# facilities implemented by the provider. This is for providers loaded +# through classpath. +# +# Note: Providers can be dynamically registered instead by calls to +# either the addProvider or insertProviderAt method in the Security +# class. + +# +# List of providers and their preference orders (see above): +# +security.provider.1=SUN +security.provider.2=SunRsaSign +security.provider.3=SunEC +security.provider.4=SunJSSE +security.provider.5=SunJCE +security.provider.6=SunJGSS +security.provider.7=SunSASL +security.provider.8=XMLDSig +security.provider.9=SunPCSC +security.provider.10=JdkLDAP +security.provider.11=JdkSASL +security.provider.12=SunMSCAPI +security.provider.13=SunPKCS11 + +# +# A list of preferred providers for specific algorithms. These providers will +# be searched for matching algorithms before the list of registered providers. +# Entries containing errors (parsing, etc) will be ignored. Use the +# -Djava.security.debug=jca property to debug these errors. +# +# The property is a comma-separated list of serviceType.algorithm:provider +# entries. The serviceType (example: "MessageDigest") is optional, and if +# not specified, the algorithm applies to all service types that support it. +# The algorithm is the standard algorithm name or transformation. +# Transformations can be specified in their full standard name +# (ex: AES/CBC/PKCS5Padding), or as partial matches (ex: AES, AES/CBC). +# The provider is the name of the provider. Any provider that does not +# also appear in the registered list will be ignored. +# +# There is a special serviceType for this property only to group a set of +# algorithms together. The type is "Group" and is followed by an algorithm +# keyword. Groups are to simplify and lessen the entries on the property +# line. Current groups are: +# Group.SHA2 = SHA-224, SHA-256, SHA-384, SHA-512, SHA-512/224, SHA-512/256 +# Group.HmacSHA2 = HmacSHA224, HmacSHA256, HmacSHA384, HmacSHA512 +# Group.SHA2RSA = SHA224withRSA, SHA256withRSA, SHA384withRSA, SHA512withRSA +# Group.SHA2DSA = SHA224withDSA, SHA256withDSA, SHA384withDSA, SHA512withDSA +# Group.SHA2ECDSA = SHA224withECDSA, SHA256withECDSA, SHA384withECDSA, \ +# SHA512withECDSA +# Group.SHA3 = SHA3-224, SHA3-256, SHA3-384, SHA3-512 +# Group.HmacSHA3 = HmacSHA3-224, HmacSHA3-256, HmacSHA3-384, HmacSHA3-512 +# +# Example: +# jdk.security.provider.preferred=AES/GCM/NoPadding:SunJCE, \ +# MessageDigest.SHA-256:SUN, Group.HmacSHA2:SunJCE +# +#jdk.security.provider.preferred= + + +# +# Sun Provider SecureRandom seed source. +# +# Select the primary source of seed data for the "NativePRNG", "SHA1PRNG" +# and "DRBG" SecureRandom implementations in the "Sun" provider. +# (Other SecureRandom implementations might also use this property.) +# +# On Unix-like systems (for example, Linux/MacOS), the +# "NativePRNG", "SHA1PRNG" and "DRBG" implementations obtains seed data from +# special device files such as file:/dev/random. +# +# On Windows systems, specifying the URLs "file:/dev/random" or +# "file:/dev/urandom" will enable the native Microsoft CryptoAPI seeding +# mechanism for SHA1PRNG and DRBG. +# +# By default, an attempt is made to use the entropy gathering device +# specified by the "securerandom.source" Security property. If an +# exception occurs while accessing the specified URL: +# +# NativePRNG: +# a default value of /dev/random will be used. If neither +# are available, the implementation will be disabled. +# "file" is the only currently supported protocol type. +# +# SHA1PRNG and DRBG: +# the traditional system/thread activity algorithm will be used. +# +# The entropy gathering device can also be specified with the System +# property "java.security.egd". For example: +# +# % java -Djava.security.egd=file:/dev/random MainClass +# +# Specifying this System property will override the +# "securerandom.source" Security property. +# +# In addition, if "file:/dev/random" or "file:/dev/urandom" is +# specified, the "NativePRNG" implementation will be more preferred than +# DRBG and SHA1PRNG in the Sun provider. +# +securerandom.source=file:/dev/random + +# +# A list of known strong SecureRandom implementations. +# +# To help guide applications in selecting a suitable strong +# java.security.SecureRandom implementation, Java distributions should +# indicate a list of known strong implementations using the property. +# +# This is a comma-separated list of algorithm and/or algorithm:provider +# entries. +# +securerandom.strongAlgorithms=Windows-PRNG:SunMSCAPI,DRBG:SUN + +# +# Sun provider DRBG configuration and default instantiation request. +# +# NIST SP 800-90Ar1 lists several DRBG mechanisms. Each can be configured +# with a DRBG algorithm name, and can be instantiated with a security strength, +# prediction resistance support, etc. This property defines the configuration +# and the default instantiation request of "DRBG" SecureRandom implementations +# in the SUN provider. (Other DRBG implementations can also use this property.) +# Applications can request different instantiation parameters like security +# strength, capability, personalization string using one of the +# getInstance(...,SecureRandomParameters,...) methods with a +# DrbgParameters.Instantiation argument, but other settings such as the +# mechanism and DRBG algorithm names are not currently configurable by any API. +# +# Please note that the SUN implementation of DRBG always supports reseeding. +# +# The value of this property is a comma-separated list of all configurable +# aspects. The aspects can appear in any order but the same aspect can only +# appear at most once. Its BNF-style definition is: +# +# Value: +# aspect { "," aspect } +# +# aspect: +# mech_name | algorithm_name | strength | capability | df +# +# // The DRBG mechanism to use. Default "Hash_DRBG" +# mech_name: +# "Hash_DRBG" | "HMAC_DRBG" | "CTR_DRBG" +# +# // The DRBG algorithm name. The "SHA-***" names are for Hash_DRBG and +# // HMAC_DRBG, default "SHA-256". The "AES-***" names are for CTR_DRBG, +# // default "AES-128" when using the limited cryptographic or "AES-256" +# // when using the unlimited. +# algorithm_name: +# "SHA-224" | "SHA-512/224" | "SHA-256" | +# "SHA-512/256" | "SHA-384" | "SHA-512" | +# "AES-128" | "AES-192" | "AES-256" +# +# // Security strength requested. Default "128" +# strength: +# "112" | "128" | "192" | "256" +# +# // Prediction resistance and reseeding request. Default "none" +# // "pr_and_reseed" - Both prediction resistance and reseeding +# // support requested +# // "reseed_only" - Only reseeding support requested +# // "none" - Neither prediction resistance not reseeding +# // support requested +# pr: +# "pr_and_reseed" | "reseed_only" | "none" +# +# // Whether a derivation function should be used. only applicable +# // to CTR_DRBG. Default "use_df" +# df: +# "use_df" | "no_df" +# +# Examples, +# securerandom.drbg.config=Hash_DRBG,SHA-224,112,none +# securerandom.drbg.config=CTR_DRBG,AES-256,192,pr_and_reseed,use_df +# +# The default value is an empty string, which is equivalent to +# securerandom.drbg.config=Hash_DRBG,SHA-256,128,none +# +securerandom.drbg.config= + +# +# Class to instantiate as the javax.security.auth.login.Configuration +# provider. +# +login.configuration.provider=sun.security.provider.ConfigFile + +# +# Default login configuration file +# +#login.config.url.1=file:${user.home}/.java.login.config + +# +# Class to instantiate as the system Policy. This is the name of the class +# that will be used as the Policy object. The system class loader is used to +# locate this class. +# +policy.provider=sun.security.provider.PolicyFile + +# The default is to have a single system-wide policy file, +# and a policy file in the user's home directory. +# +policy.url.1=file:${java.home}/conf/security/java.policy +policy.url.2=file:${user.home}/.java.policy + +# Controls whether or not properties are expanded in policy and login +# configuration files. If set to false, properties (${...}) will not +# be expanded in policy and login configuration files. If commented out or +# set to an empty string, the default value is "false" for policy files and +# "true" for login configuration files. +# +policy.expandProperties=true + +# Controls whether or not an extra policy or login configuration file is +# allowed to be passed on the command line with -Djava.security.policy=somefile +# or -Djava.security.auth.login.config=somefile. If commented out or set to +# an empty string, the default value is "false". +# +policy.allowSystemProperty=true + +# whether or not we look into the IdentityScope for trusted Identities +# when encountering a 1.1 signed JAR file. If the identity is found +# and is trusted, we grant it AllPermission. Note: the default policy +# provider (sun.security.provider.PolicyFile) does not support this property. +# +policy.ignoreIdentityScope=false + +# +# Default keystore type. +# +keystore.type=pkcs12 + +# +# Controls compatibility mode for JKS and PKCS12 keystore types. +# +# When set to 'true', both JKS and PKCS12 keystore types support loading +# keystore files in either JKS or PKCS12 format. When set to 'false' the +# JKS keystore type supports loading only JKS keystore files and the PKCS12 +# keystore type supports loading only PKCS12 keystore files. +# +keystore.type.compat=true + +# +# List of comma-separated packages that start with or equal this string +# will cause a security exception to be thrown when passed to the +# SecurityManager::checkPackageAccess method unless the corresponding +# RuntimePermission("accessClassInPackage."+package) has been granted. +# +package.access=sun.misc.,\ + sun.reflect. + +# +# List of comma-separated packages that start with or equal this string +# will cause a security exception to be thrown when passed to the +# SecurityManager::checkPackageDefinition method unless the corresponding +# RuntimePermission("defineClassInPackage."+package) has been granted. +# +# By default, none of the class loaders supplied with the JDK call +# checkPackageDefinition. +# +package.definition=sun.misc.,\ + sun.reflect. + +# +# Determines whether this properties file can be appended to +# or overridden on the command line via -Djava.security.properties +# +security.overridePropertiesFile=true + +# +# Determines the default key and trust manager factory algorithms for +# the javax.net.ssl package. +# +ssl.KeyManagerFactory.algorithm=SunX509 +ssl.TrustManagerFactory.algorithm=PKIX + +# +# The Java-level namelookup cache policy for successful lookups: +# +# any negative value: caching forever +# any positive value: the number of seconds to cache an address for +# zero: do not cache +# +# default value is forever (FOREVER). For security reasons, this +# caching is made forever when a security manager is set. When a security +# manager is not set, the default behavior in this implementation +# is to cache for 30 seconds. +# +# NOTE: setting this to anything other than the default value can have +# serious security implications. Do not set it unless +# you are sure you are not exposed to DNS spoofing attack. +# +#networkaddress.cache.ttl=-1 + +# The Java-level namelookup cache policy for failed lookups: +# +# any negative value: cache forever +# any positive value: the number of seconds to cache negative lookup results +# zero: do not cache +# +# In some Microsoft Windows networking environments that employ +# the WINS name service in addition to DNS, name service lookups +# that fail may take a noticeably long time to return (approx. 5 seconds). +# For this reason the default caching policy is to maintain these +# results for 10 seconds. +# +networkaddress.cache.negative.ttl=10 + +# +# Properties to configure OCSP for certificate revocation checking +# + +# Enable OCSP +# +# By default, OCSP is not used for certificate revocation checking. +# This property enables the use of OCSP when set to the value "true". +# +# NOTE: SocketPermission is required to connect to an OCSP responder. +# +# Example, +# ocsp.enable=true + +# +# Location of the OCSP responder +# +# By default, the location of the OCSP responder is determined implicitly +# from the certificate being validated. This property explicitly specifies +# the location of the OCSP responder. The property is used when the +# Authority Information Access extension (defined in RFC 5280) is absent +# from the certificate or when it requires overriding. +# +# Example, +# ocsp.responderURL=http://ocsp.example.net:80 + +# +# Subject name of the OCSP responder's certificate +# +# By default, the certificate of the OCSP responder is that of the issuer +# of the certificate being validated. This property identifies the certificate +# of the OCSP responder when the default does not apply. Its value is a string +# distinguished name (defined in RFC 2253) which identifies a certificate in +# the set of certificates supplied during cert path validation. In cases where +# the subject name alone is not sufficient to uniquely identify the certificate +# then both the "ocsp.responderCertIssuerName" and +# "ocsp.responderCertSerialNumber" properties must be used instead. When this +# property is set then those two properties are ignored. +# +# Example, +# ocsp.responderCertSubjectName=CN=OCSP Responder, O=XYZ Corp + +# +# Issuer name of the OCSP responder's certificate +# +# By default, the certificate of the OCSP responder is that of the issuer +# of the certificate being validated. This property identifies the certificate +# of the OCSP responder when the default does not apply. Its value is a string +# distinguished name (defined in RFC 2253) which identifies a certificate in +# the set of certificates supplied during cert path validation. When this +# property is set then the "ocsp.responderCertSerialNumber" property must also +# be set. When the "ocsp.responderCertSubjectName" property is set then this +# property is ignored. +# +# Example, +# ocsp.responderCertIssuerName=CN=Enterprise CA, O=XYZ Corp + +# +# Serial number of the OCSP responder's certificate +# +# By default, the certificate of the OCSP responder is that of the issuer +# of the certificate being validated. This property identifies the certificate +# of the OCSP responder when the default does not apply. Its value is a string +# of hexadecimal digits (colon or space separators may be present) which +# identifies a certificate in the set of certificates supplied during cert path +# validation. When this property is set then the "ocsp.responderCertIssuerName" +# property must also be set. When the "ocsp.responderCertSubjectName" property +# is set then this property is ignored. +# +# Example, +# ocsp.responderCertSerialNumber=2A:FF:00 + +# +# Policy for failed Kerberos KDC lookups: +# +# When a KDC is unavailable (network error, service failure, etc), it is +# put inside a secondary list and accessed less often for future requests. The +# value (case-insensitive) for this policy can be: +# +# tryLast +# KDCs in the secondary list are always tried after those not on the list. +# +# tryLess[:max_retries,timeout] +# KDCs in the secondary list are still tried by their order in the +# configuration, but with smaller max_retries and timeout values. +# max_retries and timeout are optional numerical parameters (default 1 and +# 5000, which means once and 5 seconds). Please note that if any of the +# values defined here are more than what is defined in krb5.conf, it will be +# ignored. +# +# Whenever a KDC is detected as available, it is removed from the secondary +# list. The secondary list is reset when krb5.conf is reloaded. You can add +# refreshKrb5Config=true to a JAAS configuration file so that krb5.conf is +# reloaded whenever a JAAS authentication is attempted. +# +# Example, +# krb5.kdc.bad.policy = tryLast +# krb5.kdc.bad.policy = tryLess:2,2000 +# +krb5.kdc.bad.policy = tryLast + +# +# Kerberos cross-realm referrals (RFC 6806) +# +# OpenJDK's Kerberos client supports cross-realm referrals as defined in +# RFC 6806. This allows to setup more dynamic environments in which clients +# do not need to know in advance how to reach the realm of a target principal +# (either a user or service). +# +# When a client issues an AS or a TGS request, the "canonicalize" option +# is set to announce support of this feature. A KDC server may fulfill the +# request or reply referring the client to a different one. If referred, +# the client will issue a new request and the cycle repeats. +# +# In addition to referrals, the "canonicalize" option allows the KDC server +# to change the client name in response to an AS request. For security reasons, +# RFC 6806 (section 11) FAST scheme is enforced. +# +# Disable Kerberos cross-realm referrals. Value may be overwritten with a +# System property (-Dsun.security.krb5.disableReferrals). +sun.security.krb5.disableReferrals=false + +# Maximum number of AS or TGS referrals to avoid infinite loops. Value may +# be overwritten with a System property (-Dsun.security.krb5.maxReferrals). +sun.security.krb5.maxReferrals=5 + +# +# This property contains a list of disabled EC Named Curves that can be included +# in the jdk.[tls|certpath|jar].disabledAlgorithms properties. To include this +# list in any of the disabledAlgorithms properties, add the property name as +# an entry. +#jdk.disabled.namedCurves= + +# +# Algorithm restrictions for certification path (CertPath) processing +# +# In some environments, certain algorithms or key lengths may be undesirable +# for certification path building and validation. For example, "MD2" is +# generally no longer considered to be a secure hash algorithm. This section +# describes the mechanism for disabling algorithms based on algorithm name +# and/or key length. This includes algorithms used in certificates, as well +# as revocation information such as CRLs and signed OCSP Responses. +# The syntax of the disabled algorithm string is described as follows: +# DisabledAlgorithms: +# " DisabledAlgorithm { , DisabledAlgorithm } " +# +# DisabledAlgorithm: +# AlgorithmName [Constraint] { '&' Constraint } | IncludeProperty +# +# AlgorithmName: +# (see below) +# +# Constraint: +# KeySizeConstraint | CAConstraint | DenyAfterConstraint | +# UsageConstraint +# +# KeySizeConstraint: +# keySize Operator KeyLength +# +# Operator: +# <= | < | == | != | >= | > +# +# KeyLength: +# Integer value of the algorithm's key length in bits +# +# CAConstraint: +# jdkCA +# +# DenyAfterConstraint: +# denyAfter YYYY-MM-DD +# +# UsageConstraint: +# usage [TLSServer] [TLSClient] [SignedJAR] +# +# IncludeProperty: +# include +# +# The "AlgorithmName" is the standard algorithm name of the disabled +# algorithm. See the Java Security Standard Algorithm Names Specification +# for information about Standard Algorithm Names. Matching is +# performed using a case-insensitive sub-element matching rule. (For +# example, in "SHA1withECDSA" the sub-elements are "SHA1" for hashing and +# "ECDSA" for signatures.) If the assertion "AlgorithmName" is a +# sub-element of the certificate algorithm name, the algorithm will be +# rejected during certification path building and validation. For example, +# the assertion algorithm name "DSA" will disable all certificate algorithms +# that rely on DSA, such as NONEwithDSA, SHA1withDSA. However, the assertion +# will not disable algorithms related to "ECDSA". +# +# The "IncludeProperty" allows a implementation-defined security property that +# can be included in the disabledAlgorithms properties. These properties are +# to help manage common actions easier across multiple disabledAlgorithm +# properties. +# There is one defined security property: jdk.disabled.namedCurves +# See the property for more specific details. +# +# +# A "Constraint" defines restrictions on the keys and/or certificates for +# a specified AlgorithmName: +# +# KeySizeConstraint: +# keySize Operator KeyLength +# The constraint requires a key of a valid size range if the +# "AlgorithmName" is of a key algorithm. The "KeyLength" indicates +# the key size specified in number of bits. For example, +# "RSA keySize <= 1024" indicates that any RSA key with key size less +# than or equal to 1024 bits should be disabled, and +# "RSA keySize < 1024, RSA keySize > 2048" indicates that any RSA key +# with key size less than 1024 or greater than 2048 should be disabled. +# This constraint is only used on algorithms that have a key size. +# +# CAConstraint: +# jdkCA +# This constraint prohibits the specified algorithm only if the +# algorithm is used in a certificate chain that terminates at a marked +# trust anchor in the lib/security/cacerts keystore. If the jdkCA +# constraint is not set, then all chains using the specified algorithm +# are restricted. jdkCA may only be used once in a DisabledAlgorithm +# expression. +# Example: To apply this constraint to SHA-1 certificates, include +# the following: "SHA1 jdkCA" +# +# DenyAfterConstraint: +# denyAfter YYYY-MM-DD +# This constraint prohibits a certificate with the specified algorithm +# from being used after the date regardless of the certificate's +# validity. JAR files that are signed and timestamped before the +# constraint date with certificates containing the disabled algorithm +# will not be restricted. The date is processed in the UTC timezone. +# This constraint can only be used once in a DisabledAlgorithm +# expression. +# Example: To deny usage of RSA 2048 bit certificates after Feb 3 2020, +# use the following: "RSA keySize == 2048 & denyAfter 2020-02-03" +# +# UsageConstraint: +# usage [TLSServer] [TLSClient] [SignedJAR] +# This constraint prohibits the specified algorithm for +# a specified usage. This should be used when disabling an algorithm +# for all usages is not practical. 'TLSServer' restricts the algorithm +# in TLS server certificate chains when server authentication is +# performed. 'TLSClient' restricts the algorithm in TLS client +# certificate chains when client authentication is performed. +# 'SignedJAR' constrains use of certificates in signed jar files. +# The usage type follows the keyword and more than one usage type can +# be specified with a whitespace delimiter. +# Example: "SHA1 usage TLSServer TLSClient" +# +# When an algorithm must satisfy more than one constraint, it must be +# delimited by an ampersand '&'. For example, to restrict certificates in a +# chain that terminate at a distribution provided trust anchor and contain +# RSA keys that are less than or equal to 1024 bits, add the following +# constraint: "RSA keySize <= 1024 & jdkCA". +# +# All DisabledAlgorithms expressions are processed in the order defined in the +# property. This requires lower keysize constraints to be specified +# before larger keysize constraints of the same algorithm. For example: +# "RSA keySize < 1024 & jdkCA, RSA keySize < 2048". +# +# Note: The algorithm restrictions do not apply to trust anchors or +# self-signed certificates. +# +# Note: This property is currently used by Oracle's PKIX implementation. It +# is not guaranteed to be examined and used by other implementations. +# +# Example: +# jdk.certpath.disabledAlgorithms=MD2, DSA, RSA keySize < 2048 +# +# +jdk.certpath.disabledAlgorithms=MD2, MD5, SHA1 jdkCA & usage TLSServer, \ + RSA keySize < 1024, DSA keySize < 1024, EC keySize < 224, \ + SHA1 usage SignedJAR & denyAfter 2019-01-01 + +# +# Legacy algorithms for certification path (CertPath) processing and +# signed JAR files. +# +# In some environments, a certain algorithm or key length may be undesirable +# but is not yet disabled. +# +# Tools such as keytool and jarsigner may emit warnings when these legacy +# algorithms are used. See the man pages for those tools for more information. +# +# The syntax is the same as the "jdk.certpath.disabledAlgorithms" and +# "jdk.jar.disabledAlgorithms" security properties. +# +# Note: This property is currently used by the JDK Reference +# implementation. It is not guaranteed to be examined and used by other +# implementations. + +jdk.security.legacyAlgorithms=SHA1, \ + RSA keySize < 2048, DSA keySize < 2048 + +# +# Algorithm restrictions for signed JAR files +# +# In some environments, certain algorithms or key lengths may be undesirable +# for signed JAR validation. For example, "MD2" is generally no longer +# considered to be a secure hash algorithm. This section describes the +# mechanism for disabling algorithms based on algorithm name and/or key length. +# JARs signed with any of the disabled algorithms or key sizes will be treated +# as unsigned. +# +# The syntax of the disabled algorithm string is described as follows: +# DisabledAlgorithms: +# " DisabledAlgorithm { , DisabledAlgorithm } " +# +# DisabledAlgorithm: +# AlgorithmName [Constraint] { '&' Constraint } +# +# AlgorithmName: +# (see below) +# +# Constraint: +# KeySizeConstraint | DenyAfterConstraint +# +# KeySizeConstraint: +# keySize Operator KeyLength +# +# DenyAfterConstraint: +# denyAfter YYYY-MM-DD +# +# Operator: +# <= | < | == | != | >= | > +# +# KeyLength: +# Integer value of the algorithm's key length in bits +# +# Note: This property is currently used by the JDK Reference +# implementation. It is not guaranteed to be examined and used by other +# implementations. +# +# See "jdk.certpath.disabledAlgorithms" for syntax descriptions. +# +jdk.jar.disabledAlgorithms=MD2, MD5, RSA keySize < 1024, \ + DSA keySize < 1024, SHA1 denyAfter 2019-01-01 + +# +# Algorithm restrictions for Secure Socket Layer/Transport Layer Security +# (SSL/TLS/DTLS) processing +# +# In some environments, certain algorithms or key lengths may be undesirable +# when using SSL/TLS/DTLS. This section describes the mechanism for disabling +# algorithms during SSL/TLS/DTLS security parameters negotiation, including +# protocol version negotiation, cipher suites selection, named groups +# selection, signature schemes selection, peer authentication and key +# exchange mechanisms. +# +# Disabled algorithms will not be negotiated for SSL/TLS connections, even +# if they are enabled explicitly in an application. +# +# For PKI-based peer authentication and key exchange mechanisms, this list +# of disabled algorithms will also be checked during certification path +# building and validation, including algorithms used in certificates, as +# well as revocation information such as CRLs and signed OCSP Responses. +# This is in addition to the jdk.certpath.disabledAlgorithms property above. +# +# See the specification of "jdk.certpath.disabledAlgorithms" for the +# syntax of the disabled algorithm string. +# +# Note: The algorithm restrictions do not apply to trust anchors or +# self-signed certificates. +# +# Note: This property is currently used by the JDK Reference implementation. +# It is not guaranteed to be examined and used by other implementations. +# +# Example: +# jdk.tls.disabledAlgorithms=MD5, SSLv3, DSA, RSA keySize < 2048, \ +# rsa_pkcs1_sha1, secp224r1 +jdk.tls.disabledAlgorithms=SSLv3, TLSv1, TLSv1.1, RC4, DES, MD5withRSA, \ + DH keySize < 1024, EC keySize < 224, 3DES_EDE_CBC, anon, NULL + +# +# Legacy algorithms for Secure Socket Layer/Transport Layer Security (SSL/TLS) +# processing in JSSE implementation. +# +# In some environments, a certain algorithm may be undesirable but it +# cannot be disabled because of its use in legacy applications. Legacy +# algorithms may still be supported, but applications should not use them +# as the security strength of legacy algorithms are usually not strong enough +# in practice. +# +# During SSL/TLS security parameters negotiation, legacy algorithms will +# not be negotiated unless there are no other candidates. +# +# The syntax of the legacy algorithms string is described as this Java +# BNF-style: +# LegacyAlgorithms: +# " LegacyAlgorithm { , LegacyAlgorithm } " +# +# LegacyAlgorithm: +# AlgorithmName (standard JSSE algorithm name) +# +# See the specification of security property "jdk.certpath.disabledAlgorithms" +# for the syntax and description of the "AlgorithmName" notation. +# +# Per SSL/TLS specifications, cipher suites have the form: +# SSL_KeyExchangeAlg_WITH_CipherAlg_MacAlg +# or +# TLS_KeyExchangeAlg_WITH_CipherAlg_MacAlg +# +# For example, the cipher suite TLS_RSA_WITH_AES_128_CBC_SHA uses RSA as the +# key exchange algorithm, AES_128_CBC (128 bits AES cipher algorithm in CBC +# mode) as the cipher (encryption) algorithm, and SHA-1 as the message digest +# algorithm for HMAC. +# +# The LegacyAlgorithm can be one of the following standard algorithm names: +# 1. JSSE cipher suite name, e.g., TLS_RSA_WITH_AES_128_CBC_SHA +# 2. JSSE key exchange algorithm name, e.g., RSA +# 3. JSSE cipher (encryption) algorithm name, e.g., AES_128_CBC +# 4. JSSE message digest algorithm name, e.g., SHA +# +# See SSL/TLS specifications and the Java Security Standard Algorithm Names +# Specification for information about the algorithm names. +# +# Note: If a legacy algorithm is also restricted through the +# jdk.tls.disabledAlgorithms property or the +# java.security.AlgorithmConstraints API (See +# javax.net.ssl.SSLParameters.setAlgorithmConstraints()), +# then the algorithm is completely disabled and will not be negotiated. +# +# Note: This property is currently used by the JDK Reference implementation. +# It is not guaranteed to be examined and used by other implementations. +# There is no guarantee the property will continue to exist or be of the +# same syntax in future releases. +# +# Example: +# jdk.tls.legacyAlgorithms=DH_anon, DES_CBC, SSL_RSA_WITH_RC4_128_MD5 +# +jdk.tls.legacyAlgorithms=NULL, anon, RC4, DES, 3DES_EDE_CBC + +# +# The pre-defined default finite field Diffie-Hellman ephemeral (DHE) +# parameters for Transport Layer Security (SSL/TLS/DTLS) processing. +# +# In traditional SSL/TLS/DTLS connections where finite field DHE parameters +# negotiation mechanism is not used, the server offers the client group +# parameters, base generator g and prime modulus p, for DHE key exchange. +# It is recommended to use dynamic group parameters. This property defines +# a mechanism that allows you to specify custom group parameters. +# +# The syntax of this property string is described as this Java BNF-style: +# DefaultDHEParameters: +# DefinedDHEParameters { , DefinedDHEParameters } +# +# DefinedDHEParameters: +# "{" DHEPrimeModulus , DHEBaseGenerator "}" +# +# DHEPrimeModulus: +# HexadecimalDigits +# +# DHEBaseGenerator: +# HexadecimalDigits +# +# HexadecimalDigits: +# HexadecimalDigit { HexadecimalDigit } +# +# HexadecimalDigit: one of +# 0 1 2 3 4 5 6 7 8 9 A B C D E F a b c d e f +# +# Whitespace characters are ignored. +# +# The "DefinedDHEParameters" defines the custom group parameters, prime +# modulus p and base generator g, for a particular size of prime modulus p. +# The "DHEPrimeModulus" defines the hexadecimal prime modulus p, and the +# "DHEBaseGenerator" defines the hexadecimal base generator g of a group +# parameter. It is recommended to use safe primes for the custom group +# parameters. +# +# If this property is not defined or the value is empty, the underlying JSSE +# provider's default group parameter is used for each connection. +# +# If the property value does not follow the grammar, or a particular group +# parameter is not valid, the connection will fall back and use the +# underlying JSSE provider's default group parameter. +# +# Note: This property is currently used by OpenJDK's JSSE implementation. It +# is not guaranteed to be examined and used by other implementations. +# +# Example: +# jdk.tls.server.defaultDHEParameters= +# { \ +# FFFFFFFF FFFFFFFF C90FDAA2 2168C234 C4C6628B 80DC1CD1 \ +# 29024E08 8A67CC74 020BBEA6 3B139B22 514A0879 8E3404DD \ +# EF9519B3 CD3A431B 302B0A6D F25F1437 4FE1356D 6D51C245 \ +# E485B576 625E7EC6 F44C42E9 A637ED6B 0BFF5CB6 F406B7ED \ +# EE386BFB 5A899FA5 AE9F2411 7C4B1FE6 49286651 ECE65381 \ +# FFFFFFFF FFFFFFFF, 2} + +# +# TLS key limits on symmetric cryptographic algorithms +# +# This security property sets limits on algorithms key usage in TLS 1.3. +# When the amount of data encrypted exceeds the algorithm value listed below, +# a KeyUpdate message will trigger a key change. This is for symmetric ciphers +# with TLS 1.3 only. +# +# The syntax for the property is described below: +# KeyLimits: +# " KeyLimit { , KeyLimit } " +# +# WeakKeyLimit: +# AlgorithmName Action Length +# +# AlgorithmName: +# A full algorithm transformation. +# +# Action: +# KeyUpdate +# +# Length: +# The amount of encrypted data in a session before the Action occurs +# This value may be an integer value in bytes, or as a power of two, 2^29. +# +# KeyUpdate: +# The TLS 1.3 KeyUpdate handshake process begins when the Length amount +# is fulfilled. +# +# Note: This property is currently used by OpenJDK's JSSE implementation. It +# is not guaranteed to be examined and used by other implementations. +# +jdk.tls.keyLimits=AES/GCM/NoPadding KeyUpdate 2^37, \ + ChaCha20-Poly1305 KeyUpdate 2^37 + +# +# Cryptographic Jurisdiction Policy defaults +# +# Import and export control rules on cryptographic software vary from +# country to country. By default, Java provides two different sets of +# cryptographic policy files[1]: +# +# unlimited: These policy files contain no restrictions on cryptographic +# strengths or algorithms +# +# limited: These policy files contain more restricted cryptographic +# strengths +# +# The default setting is determined by the value of the "crypto.policy" +# Security property below. If your country or usage requires the +# traditional restrictive policy, the "limited" Java cryptographic +# policy is still available and may be appropriate for your environment. +# +# If you have restrictions that do not fit either use case mentioned +# above, Java provides the capability to customize these policy files. +# The "crypto.policy" security property points to a subdirectory +# within /conf/security/policy/ which can be customized. +# Please see the /conf/security/policy/README.txt file or consult +# the Java Security Guide/JCA documentation for more information. +# +# YOU ARE ADVISED TO CONSULT YOUR EXPORT/IMPORT CONTROL COUNSEL OR ATTORNEY +# TO DETERMINE THE EXACT REQUIREMENTS. +# +# [1] Please note that the JCE for Java SE, including the JCE framework, +# cryptographic policy files, and standard JCE providers provided with +# the Java SE, have been reviewed and approved for export as mass market +# encryption item by the US Bureau of Industry and Security. +# +# Note: This property is currently used by the JDK Reference implementation. +# It is not guaranteed to be examined and used by other implementations. +# +crypto.policy=unlimited + +# +# The policy for the XML Signature secure validation mode. Validation of +# XML Signatures that violate any of these constraints will fail. The +# mode is enforced by default. The mode can be disabled by setting the +# property "org.jcp.xml.dsig.secureValidation" to Boolean.FALSE with the +# javax.xml.crypto.XMLCryptoContext.setProperty() method. +# +# Policy: +# Constraint {"," Constraint } +# Constraint: +# AlgConstraint | MaxTransformsConstraint | MaxReferencesConstraint | +# ReferenceUriSchemeConstraint | KeySizeConstraint | OtherConstraint +# AlgConstraint +# "disallowAlg" Uri +# MaxTransformsConstraint: +# "maxTransforms" Integer +# MaxReferencesConstraint: +# "maxReferences" Integer +# ReferenceUriSchemeConstraint: +# "disallowReferenceUriSchemes" String { String } +# KeySizeConstraint: +# "minKeySize" KeyAlg Integer +# OtherConstraint: +# "noDuplicateIds" | "noRetrievalMethodLoops" +# +# For AlgConstraint, Uri is the algorithm URI String that is not allowed. +# See the XML Signature Recommendation for more information on algorithm +# URI Identifiers. For KeySizeConstraint, KeyAlg is the standard algorithm +# name of the key type (ex: "RSA"). If the MaxTransformsConstraint, +# MaxReferencesConstraint or KeySizeConstraint (for the same key type) is +# specified more than once, only the last entry is enforced. +# +# Note: This property is currently used by the JDK Reference implementation. +# It is not guaranteed to be examined and used by other implementations. +# +jdk.xml.dsig.secureValidationPolicy=\ + disallowAlg http://www.w3.org/TR/1999/REC-xslt-19991116,\ + disallowAlg http://www.w3.org/2001/04/xmldsig-more#rsa-md5,\ + disallowAlg http://www.w3.org/2001/04/xmldsig-more#hmac-md5,\ + disallowAlg http://www.w3.org/2001/04/xmldsig-more#md5,\ + disallowAlg http://www.w3.org/2000/09/xmldsig#sha1,\ + disallowAlg http://www.w3.org/2000/09/xmldsig#dsa-sha1,\ + disallowAlg http://www.w3.org/2000/09/xmldsig#rsa-sha1,\ + disallowAlg http://www.w3.org/2007/05/xmldsig-more#sha1-rsa-MGF1,\ + disallowAlg http://www.w3.org/2001/04/xmldsig-more#ecdsa-sha1,\ + maxTransforms 5,\ + maxReferences 30,\ + disallowReferenceUriSchemes file http https,\ + minKeySize RSA 1024,\ + minKeySize DSA 1024,\ + minKeySize EC 224,\ + noDuplicateIds,\ + noRetrievalMethodLoops + + +# +# Deserialization JVM-wide filter factory +# +# A filter factory class name is used to configure the JVM-wide filter factory. +# The class must be public, must have a public zero-argument constructor, implement the +# java.util.function.BinaryOperator interface, provide its +# implementation and be accessible via the application class loader. +# A builtin filter factory is used if no filter factory is defined. +# See java.io.ObjectInputFilter.Config for more information. +# +# If the system property jdk.serialFilterFactory is also specified, it supersedes +# the security property value defined here. +# +#jdk.serialFilterFactory= + +# +# Deserialization JVM-wide filter +# +# A filter, if configured, is used by the filter factory to provide the filter used by +# java.io.ObjectInputStream during deserialization to check the contents of the stream. +# A filter is configured as a sequence of patterns, each pattern is either +# matched against the name of a class in the stream or defines a limit. +# Patterns are separated by ";" (semicolon). +# Whitespace is significant and is considered part of the pattern. +# +# If the system property jdk.serialFilter is also specified, it supersedes +# the security property value defined here. +# +# If a pattern includes a "=", it sets a limit. +# If a limit appears more than once the last value is used. +# Limits are checked before classes regardless of the order in the +# sequence of patterns. +# If any of the limits are exceeded, the filter status is REJECTED. +# +# maxdepth=value - the maximum depth of a graph +# maxrefs=value - the maximum number of internal references +# maxbytes=value - the maximum number of bytes in the input stream +# maxarray=value - the maximum array length allowed +# +# Other patterns, from left to right, match the class or package name as +# returned from Class.getName. +# If the class is an array type, the class or package to be matched is the +# element type. +# Arrays of any number of dimensions are treated the same as the element type. +# For example, a pattern of "!example.Foo", rejects creation of any instance or +# array of example.Foo. +# +# If the pattern starts with "!", the status is REJECTED if the remaining +# pattern is matched; otherwise the status is ALLOWED if the pattern matches. +# If the pattern contains "/", the non-empty prefix up to the "/" is the +# module name; +# if the module name matches the module name of the class then +# the remaining pattern is matched with the class name. +# If there is no "/", the module name is not compared. +# If the pattern ends with ".**" it matches any class in the package and all +# subpackages. +# If the pattern ends with ".*" it matches any class in the package. +# If the pattern ends with "*", it matches any class with the pattern as a +# prefix. +# If the pattern is equal to the class name, it matches. +# Otherwise, the status is UNDECIDED. +# +#jdk.serialFilter=pattern;pattern + +# +# RMI Registry Serial Filter +# +# The filter pattern uses the same format as jdk.serialFilter. +# This filter can override the builtin filter if additional types need to be +# allowed or rejected from the RMI Registry or to decrease limits but not +# to increase limits. +# If the limits (maxdepth, maxrefs, or maxbytes) are exceeded, the object is rejected. +# +# Each non-array type is allowed or rejected if it matches one of the patterns, +# evaluated from left to right, and is otherwise allowed. Arrays of any +# component type, including subarrays and arrays of primitives, are allowed. +# +# Array construction of any component type, including subarrays and arrays of +# primitives, are allowed unless the length is greater than the maxarray limit. +# The filter is applied to each array element. +# +# Note: This property is currently used by the JDK Reference implementation. +# It is not guaranteed to be examined and used by other implementations. +# +# The built-in filter allows subclasses of allowed classes and +# can approximately be represented as the pattern: +# +#sun.rmi.registry.registryFilter=\ +# maxarray=1000000;\ +# maxdepth=20;\ +# java.lang.String;\ +# java.lang.Number;\ +# java.lang.reflect.Proxy;\ +# java.rmi.Remote;\ +# sun.rmi.server.UnicastRef;\ +# sun.rmi.server.RMIClientSocketFactory;\ +# sun.rmi.server.RMIServerSocketFactory;\ +# java.rmi.server.UID +# +# RMI Distributed Garbage Collector (DGC) Serial Filter +# +# The filter pattern uses the same format as jdk.serialFilter. +# This filter can override the builtin filter if additional types need to be +# allowed or rejected from the RMI DGC. +# +# Note: This property is currently used by the JDK Reference implementation. +# It is not guaranteed to be examined and used by other implementations. +# +# The builtin DGC filter can approximately be represented as the filter pattern: +# +#sun.rmi.transport.dgcFilter=\ +# java.rmi.server.ObjID;\ +# java.rmi.server.UID;\ +# java.rmi.dgc.VMID;\ +# java.rmi.dgc.Lease;\ +# maxdepth=5;maxarray=10000 + +# +# JCEKS Encrypted Key Serial Filter +# +# This filter, if configured, is used by the JCEKS KeyStore during the +# deserialization of the encrypted Key object stored inside a key entry. +# If not configured or the filter result is UNDECIDED (i.e. none of the patterns +# matches), the filter configured by jdk.serialFilter will be consulted. +# +# If the system property jceks.key.serialFilter is also specified, it supersedes +# the security property value defined here. +# +# The filter pattern uses the same format as jdk.serialFilter. The default +# pattern allows java.lang.Enum, java.security.KeyRep, java.security.KeyRep$Type, +# and javax.crypto.spec.SecretKeySpec and rejects all the others. +jceks.key.serialFilter = java.base/java.lang.Enum;java.base/java.security.KeyRep;\ + java.base/java.security.KeyRep$Type;java.base/javax.crypto.spec.SecretKeySpec;!* + +# The iteration count used for password-based encryption (PBE) in JCEKS +# keystores. Values in the range 10000 to 5000000 are considered valid. +# If the value is out of this range, or is not a number, or is unspecified; +# a default of 200000 is used. +# +# If the system property jdk.jceks.iterationCount is also specified, it +# supersedes the security property value defined here. +# +#jdk.jceks.iterationCount = 200000 + +# +# PKCS12 KeyStore properties +# +# The following properties, if configured, are used by the PKCS12 KeyStore +# implementation during the creation of a new keystore. Several of the +# properties may also be used when modifying an existing keystore. The +# properties can be overridden by a KeyStore API that specifies its own +# algorithms and parameters. +# +# If an existing PKCS12 keystore is loaded and then stored, the algorithm and +# parameter used to generate the existing Mac will be reused. If the existing +# keystore does not have a Mac, no Mac will be created while storing. If there +# is at least one certificate in the existing keystore, the algorithm and +# parameters used to encrypt the last certificate in the existing keystore will +# be reused to encrypt all certificates while storing. If the last certificate +# in the existing keystore is not encrypted, all certificates will be stored +# unencrypted. If there is no certificate in the existing keystore, any newly +# added certificate will be encrypted (or stored unencrypted if algorithm +# value is "NONE") using the "keystore.pkcs12.certProtectionAlgorithm" and +# "keystore.pkcs12.certPbeIterationCount" values defined here. Existing private +# and secret key(s) are not changed. Newly set private and secret key(s) will +# be encrypted using the "keystore.pkcs12.keyProtectionAlgorithm" and +# "keystore.pkcs12.keyPbeIterationCount" values defined here. +# +# In order to apply new algorithms and parameters to all entries in an +# existing keystore, one can create a new keystore and add entries in the +# existing keystore into the new keystore. This can be achieved by calling the +# "keytool -importkeystore" command. +# +# If a system property of the same name is also specified, it supersedes the +# security property value defined here. +# +# If the property is set to an illegal value, +# an iteration count that is not a positive integer, or an unknown algorithm +# name, an exception will be thrown when the property is used. +# If the property is not set or empty, a default value will be used. +# +# Note: These properties are currently used by the JDK Reference implementation. +# They are not guaranteed to be examined and used by other implementations. + +# The algorithm used to encrypt a certificate. This can be any non-Hmac PBE +# algorithm defined in the Cipher section of the Java Security Standard +# Algorithm Names Specification. When set to "NONE", the certificate +# is not encrypted. The default value is "PBEWithHmacSHA256AndAES_256". +#keystore.pkcs12.certProtectionAlgorithm = PBEWithHmacSHA256AndAES_256 + +# The iteration count used by the PBE algorithm when encrypting a certificate. +# This value must be a positive integer. The default value is 10000. +#keystore.pkcs12.certPbeIterationCount = 10000 + +# The algorithm used to encrypt a private key or secret key. This can be +# any non-Hmac PBE algorithm defined in the Cipher section of the Java +# Security Standard Algorithm Names Specification. The value must not be "NONE". +# The default value is "PBEWithHmacSHA256AndAES_256". +#keystore.pkcs12.keyProtectionAlgorithm = PBEWithHmacSHA256AndAES_256 + +# The iteration count used by the PBE algorithm when encrypting a private key +# or a secret key. This value must be a positive integer. The default value +# is 10000. +#keystore.pkcs12.keyPbeIterationCount = 10000 + +# The algorithm used to calculate the optional MacData at the end of a PKCS12 +# file. This can be any HmacPBE algorithm defined in the Mac section of the +# Java Security Standard Algorithm Names Specification. When set to "NONE", +# no Mac is generated. The default value is "HmacPBESHA256". +#keystore.pkcs12.macAlgorithm = HmacPBESHA256 + +# The iteration count used by the MacData algorithm. This value must be a +# positive integer. The default value is 10000. +#keystore.pkcs12.macIterationCount = 10000 + +# +# Enhanced exception message information +# +# By default, exception messages should not include potentially sensitive +# information such as file names, host names, or port numbers. This property +# accepts one or more comma separated values, each of which represents a +# category of enhanced exception message information to enable. Values are +# case-insensitive. Leading and trailing whitespaces, surrounding each value, +# are ignored. Unknown values are ignored. +# +# NOTE: Use caution before setting this property. Setting this property +# exposes sensitive information in Exceptions, which could, for example, +# propagate to untrusted code or be emitted in stack traces that are +# inadvertently disclosed and made accessible over a public network. +# +# The categories are: +# +# hostInfo - IOExceptions thrown by java.net.Socket and the socket types in the +# java.nio.channels package will contain enhanced exception +# message information +# +# jar - enables more detailed information in the IOExceptions thrown +# by classes in the java.util.jar package +# +# The property setting in this file can be overridden by a system property of +# the same name, with the same syntax and possible values. +# +#jdk.includeInExceptions=hostInfo,jar + +# +# Disabled mechanisms for the Simple Authentication and Security Layer (SASL) +# +# Disabled mechanisms will not be negotiated by both SASL clients and servers. +# These mechanisms will be ignored if they are specified in the "mechanisms" +# argument of "Sasl.createSaslClient" or the "mechanism" argument of +# "Sasl.createSaslServer". +# +# The value of this property is a comma-separated list of SASL mechanisms. +# The mechanisms are case-sensitive. Whitespaces around the commas are ignored. +# +# Note: This property is currently used by the JDK Reference implementation. +# It is not guaranteed to be examined and used by other implementations. +# +# Example: +# jdk.sasl.disabledMechanisms=PLAIN, CRAM-MD5, DIGEST-MD5 +jdk.sasl.disabledMechanisms= + +# +# Policies for distrusting Certificate Authorities (CAs). +# +# This is a comma separated value of one or more case-sensitive strings, each +# of which represents a policy for determining if a CA should be distrusted. +# The supported values are: +# +# SYMANTEC_TLS : Distrust TLS Server certificates anchored by a Symantec +# root CA and issued after April 16, 2019 unless issued by one of the +# following subordinate CAs which have a later distrust date: +# 1. Apple IST CA 2 - G1, SHA-256 fingerprint: +# AC2B922ECFD5E01711772FEA8ED372DE9D1E2245FCE3F57A9CDBEC77296A424B +# Distrust after December 31, 2019. +# 2. Apple IST CA 8 - G1, SHA-256 fingerprint: +# A4FE7C7F15155F3F0AEF7AAA83CF6E06DEB97CA3F909DF920AC1490882D488ED +# Distrust after December 31, 2019. +# +# Leading and trailing whitespace surrounding each value are ignored. +# Unknown values are ignored. If the property is commented out or set to the +# empty String, no policies are enforced. +# +# Note: This property is currently used by the JDK Reference implementation. +# It is not guaranteed to be supported by other SE implementations. Also, this +# property does not override other security properties which can restrict +# certificates such as jdk.tls.disabledAlgorithms or +# jdk.certpath.disabledAlgorithms; those restrictions are still enforced even +# if this property is not enabled. +# +jdk.security.caDistrustPolicies=SYMANTEC_TLS + +# +# FilePermission path canonicalization +# +# This security property dictates how the path argument is processed and stored +# while constructing a FilePermission object. If the value is set to true, the +# path argument is canonicalized and FilePermission methods (such as implies, +# equals, and hashCode) are implemented based on this canonicalized result. +# Otherwise, the path argument is not canonicalized and FilePermission methods are +# implemented based on the original input. See the implementation note of the +# FilePermission class for more details. +# +# If a system property of the same name is also specified, it supersedes the +# security property value defined here. +# +# The default value for this property is false. +# +jdk.io.permissionsUseCanonicalPath=false + + +# +# Policies for the proxy_impersonator Kerberos ccache configuration entry +# +# The proxy_impersonator ccache configuration entry indicates that the ccache +# is a synthetic delegated credential for use with S4U2Proxy by an intermediate +# server. The ccache file should also contain the TGT of this server and +# an evidence ticket from the default principal of the ccache to this server. +# +# This security property determines how Java uses this configuration entry. +# There are 3 possible values: +# +# no-impersonate - Ignore this configuration entry, and always act as +# the owner of the TGT (if it exists). +# +# try-impersonate - Try impersonation when this configuration entry exists. +# If no matching TGT or evidence ticket is found, +# fallback to no-impersonate. +# +# always-impersonate - Always impersonate when this configuration entry exists. +# If no matching TGT or evidence ticket is found, +# no initial credential is read from the ccache. +# +# The default value is "always-impersonate". +# +# If a system property of the same name is also specified, it supersedes the +# security property value defined here. +# +#jdk.security.krb5.default.initiate.credential=always-impersonate + +# +# Trust Anchor Certificates - CA Basic Constraint check +# +# X.509 v3 certificates used as Trust Anchors (to validate signed code or TLS +# connections) must have the cA Basic Constraint field set to 'true'. Also, if +# they include a Key Usage extension, the keyCertSign bit must be set. These +# checks, enabled by default, can be disabled for backward-compatibility +# purposes with the jdk.security.allowNonCaAnchor System and Security +# properties. In the case that both properties are simultaneously set, the +# System value prevails. The default value of the property is "false". +# +#jdk.security.allowNonCaAnchor=true + +# +# The default Character set name (java.nio.charset.Charset.forName()) +# for converting TLS ALPN values between byte arrays and Strings. +# Prior versions of the JDK may use UTF-8 as the default charset. If +# you experience interoperability issues, setting this property to UTF-8 +# may help. +# +# jdk.tls.alpnCharset=UTF-8 +jdk.tls.alpnCharset=ISO_8859_1 + +# +# JNDI Object Factories Filter +# +# This filter is used by the JNDI runtime to control the set of object factory classes +# which will be allowed to instantiate objects from object references returned by +# naming/directory systems. The factory class named by the reference instance will be +# matched against this filter. The filter property supports pattern-based filter syntax +# with the same format as jdk.serialFilter. +# +# Each pattern is matched against the factory class name to allow or disallow it's +# instantiation. The access to a factory class is allowed unless the filter returns +# REJECTED. +# +# Note: This property is currently used by the JDK Reference implementation. +# It is not guaranteed to be examined and used by other implementations. +# +# If the system property jdk.jndi.object.factoriesFilter is also specified, it supersedes +# the security property value defined here. The default value of the property is "*". +# +# The default pattern value allows any object factory class specified by the reference +# instance to recreate the referenced object. +#jdk.jndi.object.factoriesFilter=* diff --git a/inst/stics/V11.0.0/bin/jre17/conf/security/policy/README.txt b/inst/stics/V11.0.0/bin/jre17/conf/security/policy/README.txt new file mode 100644 index 0000000..fdf77d3 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/conf/security/policy/README.txt @@ -0,0 +1,54 @@ + + Java(TM) Cryptography Extension Policy Files + for the Java(TM) Platform, Standard Edition Runtime Environment + + README +------------------------------------------------------------------------ + +Import and export control rules on cryptographic software vary from +country to country. The Java Cryptography Extension (JCE) architecture +allows flexible cryptographic key strength to be configured via the +jurisdiction policy files which are referenced by the "crypto.policy" +security property in the /conf/security/java.security file. + +By default, Java provides two different sets of cryptographic policy +files: + + unlimited: These policy files contain no restrictions on cryptographic + strengths or algorithms + + limited: These policy files contain more restricted cryptographic + strengths + +These files reside in /conf/security/policy in the "unlimited" +or "limited" subdirectories respectively. + +Each subdirectory contains a complete policy configuration, +and subdirectories can be added/edited/removed to reflect your +import or export control product requirements. + +Within a subdirectory, the effective policy is the combined minimum +permissions of the grant statements in the file(s) matching the filename +pattern "default_*.policy". At least one grant is required. For example: + + limited = Export (all) + Import (limited) = Limited + unlimited = Export (all) + Import (all) = Unlimited + +The effective exemption policy is the combined minimum permissions +of the grant statements in the file(s) matching the filename pattern +"exempt_*.policy". Exemption grants are optional. For example: + + limited = grants exemption permissions, by which the + effective policy can be circumvented. + e.g. KeyRecovery/KeyEscrow/KeyWeakening. + +Please see the Java Cryptography Architecture (JCA) documentation for +additional information on these files and formats. + +YOU ARE ADVISED TO CONSULT YOUR EXPORT/IMPORT CONTROL COUNSEL OR ATTORNEY +TO DETERMINE THE EXACT REQUIREMENTS. + +Please note that the JCE for Java SE, including the JCE framework, +cryptographic policy files, and standard JCE providers provided with +the Java SE, have been reviewed and approved for export as mass market +encryption item by the US Bureau of Industry and Security. diff --git a/inst/stics/V11.0.0/bin/jre17/conf/security/policy/limited/default_US_export.policy b/inst/stics/V11.0.0/bin/jre17/conf/security/policy/limited/default_US_export.policy new file mode 100644 index 0000000..1f38934 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/conf/security/policy/limited/default_US_export.policy @@ -0,0 +1,6 @@ +// Default US Export policy file. + +grant { + // There is no restriction to any algorithms. + permission javax.crypto.CryptoAllPermission; +}; diff --git a/inst/stics/V11.0.0/bin/jre17/conf/security/policy/limited/default_local.policy b/inst/stics/V11.0.0/bin/jre17/conf/security/policy/limited/default_local.policy new file mode 100644 index 0000000..2a6d513 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/conf/security/policy/limited/default_local.policy @@ -0,0 +1,14 @@ +// Some countries have import limits on crypto strength. This policy file +// is worldwide importable. + +grant { + permission javax.crypto.CryptoPermission "DES", 64; + permission javax.crypto.CryptoPermission "DESede", *; + permission javax.crypto.CryptoPermission "RC2", 128, + "javax.crypto.spec.RC2ParameterSpec", 128; + permission javax.crypto.CryptoPermission "RC4", 128; + permission javax.crypto.CryptoPermission "RC5", 128, + "javax.crypto.spec.RC5ParameterSpec", *, 12, *; + permission javax.crypto.CryptoPermission "RSA", *; + permission javax.crypto.CryptoPermission *, 128; +}; diff --git a/inst/stics/V11.0.0/bin/jre17/conf/security/policy/limited/exempt_local.policy b/inst/stics/V11.0.0/bin/jre17/conf/security/policy/limited/exempt_local.policy new file mode 100644 index 0000000..9dd5b91 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/conf/security/policy/limited/exempt_local.policy @@ -0,0 +1,13 @@ +// Some countries have import limits on crypto strength, but may allow for +// these exemptions if the exemption mechanism is used. + +grant { + // There is no restriction to any algorithms if KeyRecovery is enforced. + permission javax.crypto.CryptoPermission *, "KeyRecovery"; + + // There is no restriction to any algorithms if KeyEscrow is enforced. + permission javax.crypto.CryptoPermission *, "KeyEscrow"; + + // There is no restriction to any algorithms if KeyWeakening is enforced. + permission javax.crypto.CryptoPermission *, "KeyWeakening"; +}; diff --git a/inst/stics/V11.0.0/bin/jre17/conf/security/policy/unlimited/default_US_export.policy b/inst/stics/V11.0.0/bin/jre17/conf/security/policy/unlimited/default_US_export.policy new file mode 100644 index 0000000..1f38934 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/conf/security/policy/unlimited/default_US_export.policy @@ -0,0 +1,6 @@ +// Default US Export policy file. + +grant { + // There is no restriction to any algorithms. + permission javax.crypto.CryptoAllPermission; +}; diff --git a/inst/stics/V11.0.0/bin/jre17/conf/security/policy/unlimited/default_local.policy b/inst/stics/V11.0.0/bin/jre17/conf/security/policy/unlimited/default_local.policy new file mode 100644 index 0000000..2b907e2 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/conf/security/policy/unlimited/default_local.policy @@ -0,0 +1,6 @@ +// Country-specific policy file for countries with no limits on crypto strength. + +grant { + // There is no restriction to any algorithms. + permission javax.crypto.CryptoAllPermission; +}; diff --git a/inst/stics/V11.0.0/bin/jre17/conf/sound.properties b/inst/stics/V11.0.0/bin/jre17/conf/sound.properties new file mode 100644 index 0000000..68309d1 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/conf/sound.properties @@ -0,0 +1,39 @@ +############################################################ +# Sound Configuration File +############################################################ +# +# This properties file is used to specify default service +# providers for javax.sound.midi.MidiSystem and +# javax.sound.sampled.AudioSystem. +# +# The following keys are recognized by MidiSystem methods: +# +# javax.sound.midi.Receiver +# javax.sound.midi.Sequencer +# javax.sound.midi.Synthesizer +# javax.sound.midi.Transmitter +# +# The following keys are recognized by AudioSystem methods: +# +# javax.sound.sampled.Clip +# javax.sound.sampled.Port +# javax.sound.sampled.SourceDataLine +# javax.sound.sampled.TargetDataLine +# +# The values specify the full class name of the service +# provider, or the device name. +# +# See the class descriptions for details. +# +# Example 1: +# Use MyDeviceProvider as default for SourceDataLines: +# javax.sound.sampled.SourceDataLine=com.xyz.MyDeviceProvider +# +# Example 2: +# Specify the default Synthesizer by its name "InternalSynth". +# javax.sound.midi.Synthesizer=#InternalSynth +# +# Example 3: +# Specify the default Receiver by provider and name: +# javax.sound.midi.Receiver=com.sun.media.sound.MidiProvider#SunMIDI1 +# diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.base/ADDITIONAL_LICENSE_INFO b/inst/stics/V11.0.0/bin/jre17/legal/java.base/ADDITIONAL_LICENSE_INFO new file mode 100644 index 0000000..ff700cd --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.base/ADDITIONAL_LICENSE_INFO @@ -0,0 +1,37 @@ + ADDITIONAL INFORMATION ABOUT LICENSING + +Certain files distributed by Oracle America, Inc. and/or its affiliates are +subject to the following clarification and special exception to the GPLv2, +based on the GNU Project exception for its Classpath libraries, known as the +GNU Classpath Exception. + +Note that Oracle includes multiple, independent programs in this software +package. Some of those programs are provided under licenses deemed +incompatible with the GPLv2 by the Free Software Foundation and others. +For example, the package includes programs licensed under the Apache +License, Version 2.0 and may include FreeType. Such programs are licensed +to you under their original licenses. + +Oracle facilitates your further distribution of this package by adding the +Classpath Exception to the necessary parts of its GPLv2 code, which permits +you to use that code in combination with other independent modules not +licensed under the GPLv2. However, note that this would not permit you to +commingle code under an incompatible license with Oracle's GPLv2 licensed +code by, for example, cutting and pasting such code into a file also +containing Oracle's GPLv2 licensed code and then distributing the result. + +Additionally, if you were to remove the Classpath Exception from any of the +files to which it applies and distribute the result, you would likely be +required to license some or all of the other code in that distribution under +the GPLv2 as well, and since the GPLv2 is incompatible with the license terms +of some items included in the distribution by Oracle, removing the Classpath +Exception could therefore effectively compromise your ability to further +distribute the package. + +Failing to distribute notices associated with some files may also create +unexpected legal consequences. + +Proceed with caution and we recommend that you obtain the advice of a lawyer +skilled in open source matters before removing the Classpath Exception or +making modifications to this package which may subsequently be redistributed +and/or involve the use of third party software. diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.base/ASSEMBLY_EXCEPTION b/inst/stics/V11.0.0/bin/jre17/legal/java.base/ASSEMBLY_EXCEPTION new file mode 100644 index 0000000..065b8d9 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.base/ASSEMBLY_EXCEPTION @@ -0,0 +1,27 @@ + +OPENJDK ASSEMBLY EXCEPTION + +The OpenJDK source code made available by Oracle America, Inc. (Oracle) at +openjdk.java.net ("OpenJDK Code") is distributed under the terms of the GNU +General Public License version 2 +only ("GPL2"), with the following clarification and special exception. + + Linking this OpenJDK Code statically or dynamically with other code + is making a combined work based on this library. Thus, the terms + and conditions of GPL2 cover the whole combination. + + As a special exception, Oracle gives you permission to link this + OpenJDK Code with certain code licensed by Oracle as indicated at + http://openjdk.java.net/legal/exception-modules-2007-05-08.html + ("Designated Exception Modules") to produce an executable, + regardless of the license terms of the Designated Exception Modules, + and to copy and distribute the resulting executable under GPL2, + provided that the Designated Exception Modules continue to be + governed by the licenses under which they were offered by Oracle. + +As such, it allows licensees and sublicensees of Oracle's GPL2 OpenJDK Code +to build an executable that includes those portions of necessary code that +Oracle could not provide under GPL2 (or that Oracle has provided under GPL2 +with the Classpath exception). If you modify or add to the OpenJDK code, +that new GPL2 code may still be combined with Designated Exception Modules +if the new code is made subject to this exception by its copyright holder. diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.base/LICENSE b/inst/stics/V11.0.0/bin/jre17/legal/java.base/LICENSE new file mode 100644 index 0000000..8b400c7 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.base/LICENSE @@ -0,0 +1,347 @@ +The GNU General Public License (GPL) + +Version 2, June 1991 + +Copyright (C) 1989, 1991 Free Software Foundation, Inc. +51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA + +Everyone is permitted to copy and distribute verbatim copies of this license +document, but changing it is not allowed. + +Preamble + +The licenses for most software are designed to take away your freedom to share +and change it. By contrast, the GNU General Public License is intended to +guarantee your freedom to share and change free software--to make sure the +software is free for all its users. This General Public License applies to +most of the Free Software Foundation's software and to any other program whose +authors commit to using it. (Some other Free Software Foundation software is +covered by the GNU Library General Public License instead.) You can apply it to +your programs, too. + +When we speak of free software, we are referring to freedom, not price. Our +General Public Licenses are designed to make sure that you have the freedom to +distribute copies of free software (and charge for this service if you wish), +that you receive source code or can get it if you want it, that you can change +the software or use pieces of it in new free programs; and that you know you +can do these things. + +To protect your rights, we need to make restrictions that forbid anyone to deny +you these rights or to ask you to surrender the rights. These restrictions +translate to certain responsibilities for you if you distribute copies of the +software, or if you modify it. + +For example, if you distribute copies of such a program, whether gratis or for +a fee, you must give the recipients all the rights that you have. You must +make sure that they, too, receive or can get the source code. And you must +show them these terms so they know their rights. + +We protect your rights with two steps: (1) copyright the software, and (2) +offer you this license which gives you legal permission to copy, distribute +and/or modify the software. + +Also, for each author's protection and ours, we want to make certain that +everyone understands that there is no warranty for this free software. If the +software is modified by someone else and passed on, we want its recipients to +know that what they have is not the original, so that any problems introduced +by others will not reflect on the original authors' reputations. + +Finally, any free program is threatened constantly by software patents. We +wish to avoid the danger that redistributors of a free program will +individually obtain patent licenses, in effect making the program proprietary. +To prevent this, we have made it clear that any patent must be licensed for +everyone's free use or not licensed at all. + +The precise terms and conditions for copying, distribution and modification +follow. + +TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION + +0. This License applies to any program or other work which contains a notice +placed by the copyright holder saying it may be distributed under the terms of +this General Public License. The "Program", below, refers to any such program +or work, and a "work based on the Program" means either the Program or any +derivative work under copyright law: that is to say, a work containing the +Program or a portion of it, either verbatim or with modifications and/or +translated into another language. (Hereinafter, translation is included +without limitation in the term "modification".) Each licensee is addressed as +"you". + +Activities other than copying, distribution and modification are not covered by +this License; they are outside its scope. The act of running the Program is +not restricted, and the output from the Program is covered only if its contents +constitute a work based on the Program (independent of having been made by +running the Program). Whether that is true depends on what the Program does. + +1. You may copy and distribute verbatim copies of the Program's source code as +you receive it, in any medium, provided that you conspicuously and +appropriately publish on each copy an appropriate copyright notice and +disclaimer of warranty; keep intact all the notices that refer to this License +and to the absence of any warranty; and give any other recipients of the +Program a copy of this License along with the Program. + +You may charge a fee for the physical act of transferring a copy, and you may +at your option offer warranty protection in exchange for a fee. + +2. You may modify your copy or copies of the Program or any portion of it, thus +forming a work based on the Program, and copy and distribute such modifications +or work under the terms of Section 1 above, provided that you also meet all of +these conditions: + + a) You must cause the modified files to carry prominent notices stating + that you changed the files and the date of any change. + + b) You must cause any work that you distribute or publish, that in whole or + in part contains or is derived from the Program or any part thereof, to be + licensed as a whole at no charge to all third parties under the terms of + this License. + + c) If the modified program normally reads commands interactively when run, + you must cause it, when started running for such interactive use in the + most ordinary way, to print or display an announcement including an + appropriate copyright notice and a notice that there is no warranty (or + else, saying that you provide a warranty) and that users may redistribute + the program under these conditions, and telling the user how to view a copy + of this License. (Exception: if the Program itself is interactive but does + not normally print such an announcement, your work based on the Program is + not required to print an announcement.) + +These requirements apply to the modified work as a whole. If identifiable +sections of that work are not derived from the Program, and can be reasonably +considered independent and separate works in themselves, then this License, and +its terms, do not apply to those sections when you distribute them as separate +works. But when you distribute the same sections as part of a whole which is a +work based on the Program, the distribution of the whole must be on the terms +of this License, whose permissions for other licensees extend to the entire +whole, and thus to each and every part regardless of who wrote it. + +Thus, it is not the intent of this section to claim rights or contest your +rights to work written entirely by you; rather, the intent is to exercise the +right to control the distribution of derivative or collective works based on +the Program. + +In addition, mere aggregation of another work not based on the Program with the +Program (or with a work based on the Program) on a volume of a storage or +distribution medium does not bring the other work under the scope of this +License. + +3. You may copy and distribute the Program (or a work based on it, under +Section 2) in object code or executable form under the terms of Sections 1 and +2 above provided that you also do one of the following: + + a) Accompany it with the complete corresponding machine-readable source + code, which must be distributed under the terms of Sections 1 and 2 above + on a medium customarily used for software interchange; or, + + b) Accompany it with a written offer, valid for at least three years, to + give any third party, for a charge no more than your cost of physically + performing source distribution, a complete machine-readable copy of the + corresponding source code, to be distributed under the terms of Sections 1 + and 2 above on a medium customarily used for software interchange; or, + + c) Accompany it with the information you received as to the offer to + distribute corresponding source code. (This alternative is allowed only + for noncommercial distribution and only if you received the program in + object code or executable form with such an offer, in accord with + Subsection b above.) + +The source code for a work means the preferred form of the work for making +modifications to it. For an executable work, complete source code means all +the source code for all modules it contains, plus any associated interface +definition files, plus the scripts used to control compilation and installation +of the executable. However, as a special exception, the source code +distributed need not include anything that is normally distributed (in either +source or binary form) with the major components (compiler, kernel, and so on) +of the operating system on which the executable runs, unless that component +itself accompanies the executable. + +If distribution of executable or object code is made by offering access to copy +from a designated place, then offering equivalent access to copy the source +code from the same place counts as distribution of the source code, even though +third parties are not compelled to copy the source along with the object code. + +4. You may not copy, modify, sublicense, or distribute the Program except as +expressly provided under this License. Any attempt otherwise to copy, modify, +sublicense or distribute the Program is void, and will automatically terminate +your rights under this License. However, parties who have received copies, or +rights, from you under this License will not have their licenses terminated so +long as such parties remain in full compliance. + +5. You are not required to accept this License, since you have not signed it. +However, nothing else grants you permission to modify or distribute the Program +or its derivative works. These actions are prohibited by law if you do not +accept this License. Therefore, by modifying or distributing the Program (or +any work based on the Program), you indicate your acceptance of this License to +do so, and all its terms and conditions for copying, distributing or modifying +the Program or works based on it. + +6. Each time you redistribute the Program (or any work based on the Program), +the recipient automatically receives a license from the original licensor to +copy, distribute or modify the Program subject to these terms and conditions. +You may not impose any further restrictions on the recipients' exercise of the +rights granted herein. You are not responsible for enforcing compliance by +third parties to this License. + +7. If, as a consequence of a court judgment or allegation of patent +infringement or for any other reason (not limited to patent issues), conditions +are imposed on you (whether by court order, agreement or otherwise) that +contradict the conditions of this License, they do not excuse you from the +conditions of this License. If you cannot distribute so as to satisfy +simultaneously your obligations under this License and any other pertinent +obligations, then as a consequence you may not distribute the Program at all. +For example, if a patent license would not permit royalty-free redistribution +of the Program by all those who receive copies directly or indirectly through +you, then the only way you could satisfy both it and this License would be to +refrain entirely from distribution of the Program. + +If any portion of this section is held invalid or unenforceable under any +particular circumstance, the balance of the section is intended to apply and +the section as a whole is intended to apply in other circumstances. + +It is not the purpose of this section to induce you to infringe any patents or +other property right claims or to contest validity of any such claims; this +section has the sole purpose of protecting the integrity of the free software +distribution system, which is implemented by public license practices. Many +people have made generous contributions to the wide range of software +distributed through that system in reliance on consistent application of that +system; it is up to the author/donor to decide if he or she is willing to +distribute software through any other system and a licensee cannot impose that +choice. + +This section is intended to make thoroughly clear what is believed to be a +consequence of the rest of this License. + +8. If the distribution and/or use of the Program is restricted in certain +countries either by patents or by copyrighted interfaces, the original +copyright holder who places the Program under this License may add an explicit +geographical distribution limitation excluding those countries, so that +distribution is permitted only in or among countries not thus excluded. In +such case, this License incorporates the limitation as if written in the body +of this License. + +9. The Free Software Foundation may publish revised and/or new versions of the +General Public License from time to time. Such new versions will be similar in +spirit to the present version, but may differ in detail to address new problems +or concerns. + +Each version is given a distinguishing version number. If the Program +specifies a version number of this License which applies to it and "any later +version", you have the option of following the terms and conditions either of +that version or of any later version published by the Free Software Foundation. +If the Program does not specify a version number of this License, you may +choose any version ever published by the Free Software Foundation. + +10. If you wish to incorporate parts of the Program into other free programs +whose distribution conditions are different, write to the author to ask for +permission. For software which is copyrighted by the Free Software Foundation, +write to the Free Software Foundation; we sometimes make exceptions for this. +Our decision will be guided by the two goals of preserving the free status of +all derivatives of our free software and of promoting the sharing and reuse of +software generally. + +NO WARRANTY + +11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR +THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE +STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE +PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, +INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND +FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND +PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, +YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. + +12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL +ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE +PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY +GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR +INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA +BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A +FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER +OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. + +END OF TERMS AND CONDITIONS + +How to Apply These Terms to Your New Programs + +If you develop a new program, and you want it to be of the greatest possible +use to the public, the best way to achieve this is to make it free software +which everyone can redistribute and change under these terms. + +To do so, attach the following notices to the program. It is safest to attach +them to the start of each source file to most effectively convey the exclusion +of warranty; and each file should have at least the "copyright" line and a +pointer to where the full notice is found. + + One line to give the program's name and a brief idea of what it does. + + Copyright (C) + + This program is free software; you can redistribute it and/or modify it + under the terms of the GNU General Public License as published by the Free + Software Foundation; either version 2 of the License, or (at your option) + any later version. + + This program is distributed in the hope that it will be useful, but WITHOUT + ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or + FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for + more details. + + You should have received a copy of the GNU General Public License along + with this program; if not, write to the Free Software Foundation, Inc., + 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. + +Also add information on how to contact you by electronic and paper mail. + +If the program is interactive, make it output a short notice like this when it +starts in an interactive mode: + + Gnomovision version 69, Copyright (C) year name of author Gnomovision comes + with ABSOLUTELY NO WARRANTY; for details type 'show w'. This is free + software, and you are welcome to redistribute it under certain conditions; + type 'show c' for details. + +The hypothetical commands 'show w' and 'show c' should show the appropriate +parts of the General Public License. Of course, the commands you use may be +called something other than 'show w' and 'show c'; they could even be +mouse-clicks or menu items--whatever suits your program. + +You should also get your employer (if you work as a programmer) or your school, +if any, to sign a "copyright disclaimer" for the program, if necessary. Here +is a sample; alter the names: + + Yoyodyne, Inc., hereby disclaims all copyright interest in the program + 'Gnomovision' (which makes passes at compilers) written by James Hacker. + + signature of Ty Coon, 1 April 1989 + + Ty Coon, President of Vice + +This General Public License does not permit incorporating your program into +proprietary programs. If your program is a subroutine library, you may +consider it more useful to permit linking proprietary applications with the +library. If this is what you want to do, use the GNU Library General Public +License instead of this License. + + +"CLASSPATH" EXCEPTION TO THE GPL + +Certain source files distributed by Oracle America and/or its affiliates are +subject to the following clarification and special exception to the GPL, but +only where Oracle has expressly included in the particular source file's header +the words "Oracle designates this particular file as subject to the "Classpath" +exception as provided by Oracle in the LICENSE file that accompanied this code." + + Linking this library statically or dynamically with other modules is making + a combined work based on this library. Thus, the terms and conditions of + the GNU General Public License cover the whole combination. + + As a special exception, the copyright holders of this library give you + permission to link this library with independent modules to produce an + executable, regardless of the license terms of these independent modules, + and to copy and distribute the resulting executable under terms of your + choice, provided that you also meet, for each linked independent module, + the terms and conditions of the license of that module. An independent + module is a module which is not derived from or based on this library. If + you modify this library, you may extend this exception to your version of + the library, but you are not obligated to do so. If you do not wish to do + so, delete this exception statement from your version. diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.base/aes.md b/inst/stics/V11.0.0/bin/jre17/legal/java.base/aes.md new file mode 100644 index 0000000..6d0ee2e --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.base/aes.md @@ -0,0 +1,36 @@ +## Cryptix AES v3.2.0 + +### Cryptix General License +
+
+Cryptix General License
+
+Copyright (c) 1995-2005 The Cryptix Foundation Limited.
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are
+met:
+
+  1. Redistributions of source code must retain the copyright notice,
+     this list of conditions and the following disclaimer.
+
+  2. Redistributions in binary form must reproduce the above copyright
+     notice, this list of conditions and the following disclaimer in
+     the documentation and/or other materials provided with the
+     distribution.
+
+THIS SOFTWARE IS PROVIDED BY THE CRYPTIX FOUNDATION LIMITED AND
+CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES,
+INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
+IN NO EVENT SHALL THE CRYPTIX FOUNDATION LIMITED OR CONTRIBUTORS BE
+LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
+BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
+OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
+IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+
diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.base/asm.md b/inst/stics/V11.0.0/bin/jre17/legal/java.base/asm.md new file mode 100644 index 0000000..707ecda --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.base/asm.md @@ -0,0 +1,36 @@ +## ASM Bytecode Manipulation Framework v8.0.1 + +### ASM License +
+
+Copyright (c) 2000-2011 France Télécom
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions
+are met:
+
+1. Redistributions of source code must retain the above copyright
+   notice, this list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright
+   notice, this list of conditions and the following disclaimer in the
+   documentation and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holders nor the names of its
+   contributors may be used to endorse or promote products derived from
+   this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
+LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
+THE POSSIBILITY OF SUCH DAMAGE.
+
+
diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.base/c-libutl.md b/inst/stics/V11.0.0/bin/jre17/legal/java.base/c-libutl.md new file mode 100644 index 0000000..8bc9880 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.base/c-libutl.md @@ -0,0 +1,35 @@ +## c-libutl 20160225 + +### c-libutl License +``` + +This software is distributed under the terms of the BSD license. + +== BSD LICENSE =============================================================== + + (C) 2009 by Remo Dentato (rdentato@gmail.com) + + +Redistribution and use in source and binary forms, with or without modification, +are permitted provided that the following conditions are met: + + * Redistributions of source code must retain the above copyright notice, + this list of conditions and the following disclaimer. + * Redistributions in binary form must reproduce the above copyright notice, + this list of conditions and the following disclaimer in the documentation + and/or other materials provided with the distribution. + +THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND +ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED +WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE +DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR +ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES +(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; +LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND +ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT +(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS +SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + +http://opensource.org/licenses/bsd-license.php + +``` diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.base/cldr.md b/inst/stics/V11.0.0/bin/jre17/legal/java.base/cldr.md new file mode 100644 index 0000000..2f21c45 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.base/cldr.md @@ -0,0 +1,105 @@ +## Unicode Common Local Data Repository (CLDR) v39 + +### CLDR License + +``` + +UNICODE, INC. LICENSE AGREEMENT - DATA FILES AND SOFTWARE + +See Terms of Use for definitions of Unicode Inc.'s +Data Files and Software. + +NOTICE TO USER: Carefully read the following legal agreement. +BY DOWNLOADING, INSTALLING, COPYING OR OTHERWISE USING UNICODE INC.'S +DATA FILES ("DATA FILES"), AND/OR SOFTWARE ("SOFTWARE"), +YOU UNEQUIVOCALLY ACCEPT, AND AGREE TO BE BOUND BY, ALL OF THE +TERMS AND CONDITIONS OF THIS AGREEMENT. +IF YOU DO NOT AGREE, DO NOT DOWNLOAD, INSTALL, COPY, DISTRIBUTE OR USE +THE DATA FILES OR SOFTWARE. + +COPYRIGHT AND PERMISSION NOTICE + +Copyright © 1991-2021 Unicode, Inc. All rights reserved. +Distributed under the Terms of Use in https://www.unicode.org/copyright.html. + +Permission is hereby granted, free of charge, to any person obtaining +a copy of the Unicode data files and any associated documentation +(the "Data Files") or Unicode software and any associated documentation +(the "Software") to deal in the Data Files or Software +without restriction, including without limitation the rights to use, +copy, modify, merge, publish, distribute, and/or sell copies of +the Data Files or Software, and to permit persons to whom the Data Files +or Software are furnished to do so, provided that either +(a) this copyright and permission notice appear with all copies +of the Data Files or Software, or +(b) this copyright and permission notice appear in associated +Documentation. + +THE DATA FILES AND SOFTWARE ARE PROVIDED "AS IS", WITHOUT WARRANTY OF +ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE +WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND +NONINFRINGEMENT OF THIRD PARTY RIGHTS. +IN NO EVENT SHALL THE COPYRIGHT HOLDER OR HOLDERS INCLUDED IN THIS +NOTICE BE LIABLE FOR ANY CLAIM, OR ANY SPECIAL INDIRECT OR CONSEQUENTIAL +DAMAGES, OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, +DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER +TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR +PERFORMANCE OF THE DATA FILES OR SOFTWARE. + +Except as contained in this notice, the name of a copyright holder +shall not be used in advertising or otherwise to promote the sale, +use or other dealings in these Data Files or Software without prior +written authorization of the copyright holder. + + +------------------------------------------------------------ Terms of Use --------------------------------------------------------------- + +Unicode® Copyright and Terms of Use +For the general privacy policy governing access to this site, see the Unicode Privacy Policy. + +Unicode Copyright +Copyright © 1991-2021 Unicode, Inc. All rights reserved. +Definitions +Unicode Data Files ("DATA FILES") include all data files under the directories: +https://www.unicode.org/Public/ +https://www.unicode.org/reports/ +https://www.unicode.org/ivd/data/ + +Unicode Data Files do not include PDF online code charts under the directory: +https://www.unicode.org/Public/ + +Unicode Software ("SOFTWARE") includes any source code published in the Unicode Standard +or any source code or compiled code under the directories: +https://www.unicode.org/Public/PROGRAMS/ +https://www.unicode.org/Public/cldr/ +http://site.icu-project.org/download/ +Terms of Use +Certain documents and files on this website contain a legend indicating that "Modification is permitted." Any person is hereby authorized, without fee, to modify such documents and files to create derivative works conforming to the Unicode® Standard, subject to Terms and Conditions herein. +Any person is hereby authorized, without fee, to view, use, reproduce, and distribute all documents and files, subject to the Terms and Conditions herein. +Further specifications of rights and restrictions pertaining to the use of the Unicode DATA FILES and SOFTWARE can be found in the Unicode Data Files and Software License. +Each version of the Unicode Standard has further specifications of rights and restrictions of use. For the book editions (Unicode 5.0 and earlier), these are found on the back of the title page. +The Unicode PDF online code charts carry specific restrictions. Those restrictions are incorporated as the first page of each PDF code chart. +All other files, including online documentation of the core specification for Unicode 6.0 and later, are covered under these general Terms of Use. +No license is granted to "mirror" the Unicode website where a fee is charged for access to the "mirror" site. +Modification is not permitted with respect to this document. All copies of this document must be verbatim. +Restricted Rights Legend +Any technical data or software which is licensed to the United States of America, its agencies and/or instrumentalities under this Agreement is commercial technical data or commercial computer software developed exclusively at private expense as defined in FAR 2.101, or DFARS 252.227-7014 (June 1995), as applicable. For technical data, use, duplication, or disclosure by the Government is subject to restrictions as set forth in DFARS 202.227-7015 Technical Data, Commercial and Items (Nov 1995) and this Agreement. For Software, in accordance with FAR 12-212 or DFARS 227-7202, as applicable, use, duplication or disclosure by the Government is subject to the restrictions set forth in this Agreement. +Warranties and Disclaimers +This publication and/or website may include technical or typographical errors or other inaccuracies. Changes are periodically added to the information herein; these changes will be incorporated in new editions of the publication and/or website. Unicode, Inc. may make improvements and/or changes in the product(s) and/or program(s) described in this publication and/or website at any time. +If this file has been purchased on magnetic or optical media from Unicode, Inc. the sole and exclusive remedy for any claim will be exchange of the defective media within ninety (90) days of original purchase. +EXCEPT AS PROVIDED IN SECTION E.2, THIS PUBLICATION AND/OR SOFTWARE IS PROVIDED "AS IS" WITHOUT WARRANTY OF ANY KIND EITHER EXPRESS, IMPLIED, OR STATUTORY, INCLUDING, BUT NOT LIMITED TO, ANY WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, OR NON-INFRINGEMENT. UNICODE, INC. AND ITS LICENSORS ASSUME NO RESPONSIBILITY FOR ERRORS OR OMISSIONS IN THIS PUBLICATION AND/OR SOFTWARE OR OTHER DOCUMENTS WHICH ARE REFERENCED BY OR LINKED TO THIS PUBLICATION OR THE UNICODE WEBSITE. +Waiver of Damages +In no event shall Unicode, Inc. or its licensors be liable for any special, incidental, indirect or consequential damages of any kind, or any damages whatsoever, whether or not Unicode, Inc. was advised of the possibility of the damage, including, without limitation, those resulting from the following: loss of use, data or profits, in connection with the use, modification or distribution of this information or its derivatives. +Trademarks & Logos +The Unicode Word Mark and the Unicode Logo are trademarks of Unicode, Inc. “The Unicode Consortium” and “Unicode, Inc.” are trade names of Unicode, Inc. Use of the information and materials found on this website indicates your acknowledgement of Unicode, Inc.’s exclusive worldwide rights in the Unicode Word Mark, the Unicode Logo, and the Unicode trade names. +The Unicode Consortium Name and Trademark Usage Policy (“Trademark Policy”) are incorporated herein by reference and you agree to abide by the provisions of the Trademark Policy, which may be changed from time to time in the sole discretion of Unicode, Inc. +All third party trademarks referenced herein are the property of their respective owners. +Miscellaneous +Jurisdiction and Venue. This website is operated from a location in the State of California, United States of America. Unicode, Inc. makes no representation that the materials are appropriate for use in other locations. If you access this website from other locations, you are responsible for compliance with local laws. This Agreement, all use of this website and any claims and damages resulting from use of this website are governed solely by the laws of the State of California without regard to any principles which would apply the laws of a different jurisdiction. The user agrees that any disputes regarding this website shall be resolved solely in the courts located in Santa Clara County, California. The user agrees said courts have personal jurisdiction and agree to waive any right to transfer the dispute to any other forum. +Modification by Unicode, Inc. Unicode, Inc. shall have the right to modify this Agreement at any time by posting it to this website. The user may not assign any part of this Agreement without Unicode, Inc.’s prior written consent. +Taxes. The user agrees to pay any taxes arising from access to this website or use of the information herein, except for those based on Unicode’s net income. +Severability. If any provision of this Agreement is declared invalid or unenforceable, the remaining provisions of this Agreement shall remain in effect. +Entire Agreement. This Agreement constitutes the entire agreement between the parties. + + +``` diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.base/icu.md b/inst/stics/V11.0.0/bin/jre17/legal/java.base/icu.md new file mode 100644 index 0000000..ab850bf --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.base/icu.md @@ -0,0 +1,140 @@ +## International Components for Unicode (ICU4J) v67.1 + +### ICU4J License +``` + +COPYRIGHT AND PERMISSION NOTICE (ICU 58 and later) + +Copyright © 1991-2020 Unicode, Inc. All rights reserved. +Distributed under the Terms of Use in https://www.unicode.org/copyright.html. + +Permission is hereby granted, free of charge, to any person obtaining +a copy of the Unicode data files and any associated documentation +(the "Data Files") or Unicode software and any associated documentation +(the "Software") to deal in the Data Files or Software +without restriction, including without limitation the rights to use, +copy, modify, merge, publish, distribute, and/or sell copies of +the Data Files or Software, and to permit persons to whom the Data Files +or Software are furnished to do so, provided that either +(a) this copyright and permission notice appear with all copies +of the Data Files or Software, or +(b) this copyright and permission notice appear in associated +Documentation. + +THE DATA FILES AND SOFTWARE ARE PROVIDED "AS IS", WITHOUT WARRANTY OF +ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE +WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND +NONINFRINGEMENT OF THIRD PARTY RIGHTS. +IN NO EVENT SHALL THE COPYRIGHT HOLDER OR HOLDERS INCLUDED IN THIS +NOTICE BE LIABLE FOR ANY CLAIM, OR ANY SPECIAL INDIRECT OR CONSEQUENTIAL +DAMAGES, OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, +DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER +TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR +PERFORMANCE OF THE DATA FILES OR SOFTWARE. + +Except as contained in this notice, the name of a copyright holder +shall not be used in advertising or otherwise to promote the sale, +use or other dealings in these Data Files or Software without prior +written authorization of the copyright holder. + +--------------------- + +Third-Party Software Licenses + +This section contains third-party software notices and/or additional +terms for licensed third-party software components included within ICU +libraries. + +1. ICU License - ICU 1.8.1 to ICU 57.1 + +COPYRIGHT AND PERMISSION NOTICE + +Copyright (c) 1995-2016 International Business Machines Corporation and others +All rights reserved. + +Permission is hereby granted, free of charge, to any person obtaining +a copy of this software and associated documentation files (the +"Software"), to deal in the Software without restriction, including +without limitation the rights to use, copy, modify, merge, publish, +distribute, and/or sell copies of the Software, and to permit persons +to whom the Software is furnished to do so, provided that the above +copyright notice(s) and this permission notice appear in all copies of +the Software and that both the above copyright notice(s) and this +permission notice appear in supporting documentation. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, +EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF +MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT +OF THIRD PARTY RIGHTS. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR +HOLDERS INCLUDED IN THIS NOTICE BE LIABLE FOR ANY CLAIM, OR ANY +SPECIAL INDIRECT OR CONSEQUENTIAL DAMAGES, OR ANY DAMAGES WHATSOEVER +RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF +CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN +CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE. + +Except as contained in this notice, the name of a copyright holder +shall not be used in advertising or otherwise to promote the sale, use +or other dealings in this Software without prior written authorization +of the copyright holder. + +All trademarks and registered trademarks mentioned herein are the +property of their respective owners. + + +—————————————————————————————————————————————————————————————————————— + + +From: https://www.unicode.org/copyright.html: + + Unicode® Copyright and Terms of Use + + For the general privacy policy governing access to this site, see the Unicode Privacy Policy. + + Unicode Copyright + Copyright © 1991-2020 Unicode, Inc. All rights reserved. + Definitions + + Unicode Data Files ("DATA FILES") include all data files under the directories: + https://www.unicode.org/Public/ + https://www.unicode.org/reports/ + https://www.unicode.org/ivd/data/ + + Unicode Data Files do not include PDF online code charts under the directory: + https://www.unicode.org/Public/ + + Unicode Software ("SOFTWARE") includes any source code published in the Unicode Standard + or any source code or compiled code under the directories: + https://www.unicode.org/Public/PROGRAMS/ + https://www.unicode.org/Public/cldr/ + http://site.icu-project.org/download/ + + Terms of Use + Certain documents and files on this website contain a legend indicating that "Modification is permitted." Any person is hereby authorized, without fee, to modify such documents and files to create derivative works conforming to the Unicode® Standard, subject to Terms and Conditions herein. + Any person is hereby authorized, without fee, to view, use, reproduce, and distribute all documents and files, subject to the Terms and Conditions herein. + Further specifications of rights and restrictions pertaining to the use of the Unicode DATA FILES and SOFTWARE can be found in the Unicode Data Files and Software License. + Each version of the Unicode Standard has further specifications of rights and restrictions of use. For the book editions (Unicode 5.0 and earlier), these are found on the back of the title page. + The Unicode PDF online code charts carry specific restrictions. Those restrictions are incorporated as the first page of each PDF code chart. + All other files, including online documentation of the core specification for Unicode 6.0 and later, are covered under these general Terms of Use. + No license is granted to "mirror" the Unicode website where a fee is charged for access to the "mirror" site. + Modification is not permitted with respect to this document. All copies of this document must be verbatim. + Restricted Rights Legend + Any technical data or software which is licensed to the United States of America, its agencies and/or instrumentalities under this Agreement is commercial technical data or commercial computer software developed exclusively at private expense as defined in FAR 2.101, or DFARS 252.227-7014 (June 1995), as applicable. For technical data, use, duplication, or disclosure by the Government is subject to restrictions as set forth in DFARS 202.227-7015 Technical Data, Commercial and Items (Nov 1995) and this Agreement. For Software, in accordance with FAR 12-212 or DFARS 227-7202, as applicable, use, duplication or disclosure by the Government is subject to the restrictions set forth in this Agreement. + Warranties and Disclaimers + This publication and/or website may include technical or typographical errors or other inaccuracies. Changes are periodically added to the information herein; these changes will be incorporated in new editions of the publication and/or website. Unicode, Inc. may make improvements and/or changes in the product(s) and/or program(s) described in this publication and/or website at any time. + If this file has been purchased on magnetic or optical media from Unicode, Inc. the sole and exclusive remedy for any claim will be exchange of the defective media within ninety (90) days of original purchase. + EXCEPT AS PROVIDED IN SECTION E.2, THIS PUBLICATION AND/OR SOFTWARE IS PROVIDED "AS IS" WITHOUT WARRANTY OF ANY KIND EITHER EXPRESS, IMPLIED, OR STATUTORY, INCLUDING, BUT NOT LIMITED TO, ANY WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, OR NON-INFRINGEMENT. UNICODE, INC. AND ITS LICENSORS ASSUME NO RESPONSIBILITY FOR ERRORS OR OMISSIONS IN THIS PUBLICATION AND/OR SOFTWARE OR OTHER DOCUMENTS WHICH ARE REFERENCED BY OR LINKED TO THIS PUBLICATION OR THE UNICODE WEBSITE. + Waiver of Damages + In no event shall Unicode, Inc. or its licensors be liable for any special, incidental, indirect or consequential damages of any kind, or any damages whatsoever, whether or not Unicode, Inc. was advised of the possibility of the damage, including, without limitation, those resulting from the following: loss of use, data or profits, in connection with the use, modification or distribution of this information or its derivatives. + Trademarks & Logos + The Unicode Word Mark and the Unicode Logo are trademarks of Unicode, Inc. “The Unicode Consortium” and “Unicode, Inc.” are trade names of Unicode, Inc. Use of the information and materials found on this website indicates your acknowledgement of Unicode, Inc.’s exclusive worldwide rights in the Unicode Word Mark, the Unicode Logo, and the Unicode trade names. + The Unicode Consortium Name and Trademark Usage Policy (“Trademark Policy”) are incorporated herein by reference and you agree to abide by the provisions of the Trademark Policy, which may be changed from time to time in the sole discretion of Unicode, Inc. + All third party trademarks referenced herein are the property of their respective owners. + Miscellaneous + Jurisdiction and Venue. This website is operated from a location in the State of California, United States of America. Unicode, Inc. makes no representation that the materials are appropriate for use in other locations. If you access this website from other locations, you are responsible for compliance with local laws. This Agreement, all use of this website and any claims and damages resulting from use of this website are governed solely by the laws of the State of California without regard to any principles which would apply the laws of a different jurisdiction. The user agrees that any disputes regarding this website shall be resolved solely in the courts located in Santa Clara County, California. The user agrees said courts have personal jurisdiction and agree to waive any right to transfer the dispute to any other forum. + Modification by Unicode, Inc. Unicode, Inc. shall have the right to modify this Agreement at any time by posting it to this website. The user may not assign any part of this Agreement without Unicode, Inc.’s prior written consent. + Taxes. The user agrees to pay any taxes arising from access to this website or use of the information herein, except for those based on Unicode’s net income. + Severability. If any provision of this Agreement is declared invalid or unenforceable, the remaining provisions of this Agreement shall remain in effect. + Entire Agreement. This Agreement constitutes the entire agreement between the parties. + +``` + diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.base/public_suffix.md b/inst/stics/V11.0.0/bin/jre17/legal/java.base/public_suffix.md new file mode 100644 index 0000000..61d9607 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.base/public_suffix.md @@ -0,0 +1,399 @@ +## Mozilla Public Suffix List + +### Public Suffix Notice +``` +You are receiving a copy of the Mozilla Public Suffix List in the following +file: /lib/security/public_suffix_list.dat. The terms of the +Oracle license do NOT apply to this file; it is licensed under the +Mozilla Public License 2.0, separately from the Oracle programs you receive. +If you do not wish to use the Public Suffix List, you may remove the +/lib/security/public_suffix_list.dat file. + +The Source Code of this file is available under the +Mozilla Public License, v. 2.0 and is located at +https://raw.githubusercontent.com/publicsuffix/list/3c213aab32b3c014f171b1673d4ce9b5cd72bf1c/public_suffix_list.dat. +If a copy of the MPL was not distributed with this file, you can obtain one +at https://mozilla.org/MPL/2.0/. + +Software distributed under the License is distributed on an "AS IS" basis, +WITHOUT WARRANTY OF ANY KIND, either express or implied. See the License +for the specific language governing rights and limitations under the License. +``` + +### MPL v2.0 +``` +Mozilla Public License Version 2.0 +================================== + +1. Definitions +-------------- + +1.1. "Contributor" + means each individual or legal entity that creates, contributes to + the creation of, or owns Covered Software. + +1.2. "Contributor Version" + means the combination of the Contributions of others (if any) used + by a Contributor and that particular Contributor's Contribution. + +1.3. "Contribution" + means Covered Software of a particular Contributor. + +1.4. "Covered Software" + means Source Code Form to which the initial Contributor has attached + the notice in Exhibit A, the Executable Form of such Source Code + Form, and Modifications of such Source Code Form, in each case + including portions thereof. + +1.5. "Incompatible With Secondary Licenses" + means + + (a) that the initial Contributor has attached the notice described + in Exhibit B to the Covered Software; or + + (b) that the Covered Software was made available under the terms of + version 1.1 or earlier of the License, but not also under the + terms of a Secondary License. + +1.6. "Executable Form" + means any form of the work other than Source Code Form. + +1.7. "Larger Work" + means a work that combines Covered Software with other material, in + a separate file or files, that is not Covered Software. + +1.8. "License" + means this document. + +1.9. "Licensable" + means having the right to grant, to the maximum extent possible, + whether at the time of the initial grant or subsequently, any and + all of the rights conveyed by this License. + +1.10. "Modifications" + means any of the following: + + (a) any file in Source Code Form that results from an addition to, + deletion from, or modification of the contents of Covered + Software; or + + (b) any new file in Source Code Form that contains any Covered + Software. + +1.11. "Patent Claims" of a Contributor + means any patent claim(s), including without limitation, method, + process, and apparatus claims, in any patent Licensable by such + Contributor that would be infringed, but for the grant of the + License, by the making, using, selling, offering for sale, having + made, import, or transfer of either its Contributions or its + Contributor Version. + +1.12. "Secondary License" + means either the GNU General Public License, Version 2.0, the GNU + Lesser General Public License, Version 2.1, the GNU Affero General + Public License, Version 3.0, or any later versions of those + licenses. + +1.13. "Source Code Form" + means the form of the work preferred for making modifications. + +1.14. "You" (or "Your") + means an individual or a legal entity exercising rights under this + License. For legal entities, "You" includes any entity that + controls, is controlled by, or is under common control with You. For + purposes of this definition, "control" means (a) the power, direct + or indirect, to cause the direction or management of such entity, + whether by contract or otherwise, or (b) ownership of more than + fifty percent (50%) of the outstanding shares or beneficial + ownership of such entity. + +2. License Grants and Conditions +-------------------------------- + +2.1. Grants + +Each Contributor hereby grants You a world-wide, royalty-free, +non-exclusive license: + +(a) under intellectual property rights (other than patent or trademark) + Licensable by such Contributor to use, reproduce, make available, + modify, display, perform, distribute, and otherwise exploit its + Contributions, either on an unmodified basis, with Modifications, or + as part of a Larger Work; and + +(b) under Patent Claims of such Contributor to make, use, sell, offer + for sale, have made, import, and otherwise transfer either its + Contributions or its Contributor Version. + +2.2. Effective Date + +The licenses granted in Section 2.1 with respect to any Contribution +become effective for each Contribution on the date the Contributor first +distributes such Contribution. + +2.3. Limitations on Grant Scope + +The licenses granted in this Section 2 are the only rights granted under +this License. No additional rights or licenses will be implied from the +distribution or licensing of Covered Software under this License. +Notwithstanding Section 2.1(b) above, no patent license is granted by a +Contributor: + +(a) for any code that a Contributor has removed from Covered Software; + or + +(b) for infringements caused by: (i) Your and any other third party's + modifications of Covered Software, or (ii) the combination of its + Contributions with other software (except as part of its Contributor + Version); or + +(c) under Patent Claims infringed by Covered Software in the absence of + its Contributions. + +This License does not grant any rights in the trademarks, service marks, +or logos of any Contributor (except as may be necessary to comply with +the notice requirements in Section 3.4). + +2.4. Subsequent Licenses + +No Contributor makes additional grants as a result of Your choice to +distribute the Covered Software under a subsequent version of this +License (see Section 10.2) or under the terms of a Secondary License (if +permitted under the terms of Section 3.3). + +2.5. Representation + +Each Contributor represents that the Contributor believes its +Contributions are its original creation(s) or it has sufficient rights +to grant the rights to its Contributions conveyed by this License. + +2.6. Fair Use + +This License is not intended to limit any rights You have under +applicable copyright doctrines of fair use, fair dealing, or other +equivalents. + +2.7. Conditions + +Sections 3.1, 3.2, 3.3, and 3.4 are conditions of the licenses granted +in Section 2.1. + +3. Responsibilities +------------------- + +3.1. Distribution of Source Form + +All distribution of Covered Software in Source Code Form, including any +Modifications that You create or to which You contribute, must be under +the terms of this License. You must inform recipients that the Source +Code Form of the Covered Software is governed by the terms of this +License, and how they can obtain a copy of this License. You may not +attempt to alter or restrict the recipients' rights in the Source Code +Form. + +3.2. Distribution of Executable Form + +If You distribute Covered Software in Executable Form then: + +(a) such Covered Software must also be made available in Source Code + Form, as described in Section 3.1, and You must inform recipients of + the Executable Form how they can obtain a copy of such Source Code + Form by reasonable means in a timely manner, at a charge no more + than the cost of distribution to the recipient; and + +(b) You may distribute such Executable Form under the terms of this + License, or sublicense it under different terms, provided that the + license for the Executable Form does not attempt to limit or alter + the recipients' rights in the Source Code Form under this License. + +3.3. Distribution of a Larger Work + +You may create and distribute a Larger Work under terms of Your choice, +provided that You also comply with the requirements of this License for +the Covered Software. If the Larger Work is a combination of Covered +Software with a work governed by one or more Secondary Licenses, and the +Covered Software is not Incompatible With Secondary Licenses, this +License permits You to additionally distribute such Covered Software +under the terms of such Secondary License(s), so that the recipient of +the Larger Work may, at their option, further distribute the Covered +Software under the terms of either this License or such Secondary +License(s). + +3.4. Notices + +You may not remove or alter the substance of any license notices +(including copyright notices, patent notices, disclaimers of warranty, +or limitations of liability) contained within the Source Code Form of +the Covered Software, except that You may alter any license notices to +the extent required to remedy known factual inaccuracies. + +3.5. Application of Additional Terms + +You may choose to offer, and to charge a fee for, warranty, support, +indemnity or liability obligations to one or more recipients of Covered +Software. However, You may do so only on Your own behalf, and not on +behalf of any Contributor. You must make it absolutely clear that any +such warranty, support, indemnity, or liability obligation is offered by +You alone, and You hereby agree to indemnify every Contributor for any +liability incurred by such Contributor as a result of warranty, support, +indemnity or liability terms You offer. You may include additional +disclaimers of warranty and limitations of liability specific to any +jurisdiction. + +4. Inability to Comply Due to Statute or Regulation +--------------------------------------------------- + +If it is impossible for You to comply with any of the terms of this +License with respect to some or all of the Covered Software due to +statute, judicial order, or regulation then You must: (a) comply with +the terms of this License to the maximum extent possible; and (b) +describe the limitations and the code they affect. Such description must +be placed in a text file included with all distributions of the Covered +Software under this License. Except to the extent prohibited by statute +or regulation, such description must be sufficiently detailed for a +recipient of ordinary skill to be able to understand it. + +5. Termination +-------------- + +5.1. The rights granted under this License will terminate automatically +if You fail to comply with any of its terms. However, if You become +compliant, then the rights granted under this License from a particular +Contributor are reinstated (a) provisionally, unless and until such +Contributor explicitly and finally terminates Your grants, and (b) on an +ongoing basis, if such Contributor fails to notify You of the +non-compliance by some reasonable means prior to 60 days after You have +come back into compliance. Moreover, Your grants from a particular +Contributor are reinstated on an ongoing basis if such Contributor +notifies You of the non-compliance by some reasonable means, this is the +first time You have received notice of non-compliance with this License +from such Contributor, and You become compliant prior to 30 days after +Your receipt of the notice. + +5.2. If You initiate litigation against any entity by asserting a patent +infringement claim (excluding declaratory judgment actions, +counter-claims, and cross-claims) alleging that a Contributor Version +directly or indirectly infringes any patent, then the rights granted to +You by any and all Contributors for the Covered Software under Section +2.1 of this License shall terminate. + +5.3. In the event of termination under Sections 5.1 or 5.2 above, all +end user license agreements (excluding distributors and resellers) which +have been validly granted by You or Your distributors under this License +prior to termination shall survive termination. + +************************************************************************ +* * +* 6. Disclaimer of Warranty * +* ------------------------- * +* * +* Covered Software is provided under this License on an "as is" * +* basis, without warranty of any kind, either expressed, implied, or * +* statutory, including, without limitation, warranties that the * +* Covered Software is free of defects, merchantable, fit for a * +* particular purpose or non-infringing. The entire risk as to the * +* quality and performance of the Covered Software is with You. * +* Should any Covered Software prove defective in any respect, You * +* (not any Contributor) assume the cost of any necessary servicing, * +* repair, or correction. This disclaimer of warranty constitutes an * +* essential part of this License. No use of any Covered Software is * +* authorized under this License except under this disclaimer. * +* * +************************************************************************ + +************************************************************************ +* * +* 7. Limitation of Liability * +* -------------------------- * +* * +* Under no circumstances and under no legal theory, whether tort * +* (including negligence), contract, or otherwise, shall any * +* Contributor, or anyone who distributes Covered Software as * +* permitted above, be liable to You for any direct, indirect, * +* special, incidental, or consequential damages of any character * +* including, without limitation, damages for lost profits, loss of * +* goodwill, work stoppage, computer failure or malfunction, or any * +* and all other commercial damages or losses, even if such party * +* shall have been informed of the possibility of such damages. This * +* limitation of liability shall not apply to liability for death or * +* personal injury resulting from such party's negligence to the * +* extent applicable law prohibits such limitation. Some * +* jurisdictions do not allow the exclusion or limitation of * +* incidental or consequential damages, so this exclusion and * +* limitation may not apply to You. * +* * +************************************************************************ + +8. Litigation +------------- + +Any litigation relating to this License may be brought only in the +courts of a jurisdiction where the defendant maintains its principal +place of business and such litigation shall be governed by laws of that +jurisdiction, without reference to its conflict-of-law provisions. +Nothing in this Section shall prevent a party's ability to bring +cross-claims or counter-claims. + +9. Miscellaneous +---------------- + +This License represents the complete agreement concerning the subject +matter hereof. If any provision of this License is held to be +unenforceable, such provision shall be reformed only to the extent +necessary to make it enforceable. Any law or regulation which provides +that the language of a contract shall be construed against the drafter +shall not be used to construe this License against a Contributor. + +10. Versions of the License +--------------------------- + +10.1. New Versions + +Mozilla Foundation is the license steward. Except as provided in Section +10.3, no one other than the license steward has the right to modify or +publish new versions of this License. Each version will be given a +distinguishing version number. + +10.2. Effect of New Versions + +You may distribute the Covered Software under the terms of the version +of the License under which You originally received the Covered Software, +or under the terms of any subsequent version published by the license +steward. + +10.3. Modified Versions + +If you create software not governed by this License, and you want to +create a new license for such software, you may create and use a +modified version of this License if you rename the license and remove +any references to the name of the license steward (except to note that +such modified license differs from this License). + +10.4. Distributing Source Code Form that is Incompatible With Secondary +Licenses + +If You choose to distribute Source Code Form that is Incompatible With +Secondary Licenses under the terms of this version of the License, the +notice described in Exhibit B of this License must be attached. + +Exhibit A - Source Code Form License Notice +------------------------------------------- + + This Source Code Form is subject to the terms of the Mozilla Public + License, v. 2.0. If a copy of the MPL was not distributed with this + file, You can obtain one at https://mozilla.org/MPL/2.0/. + +If it is not possible or desirable to put the notice in a particular +file, then You may include the notice in a location (such as a LICENSE +file in a relevant directory) where a recipient would be likely to look +for such a notice. + +You may add additional accurate notices of copyright ownership. + +Exhibit B - "Incompatible With Secondary Licenses" Notice +--------------------------------------------------------- + + This Source Code Form is "Incompatible With Secondary Licenses", as + defined by the Mozilla Public License, v. 2.0. + +``` diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.base/unicode.md b/inst/stics/V11.0.0/bin/jre17/legal/java.base/unicode.md new file mode 100644 index 0000000..cff0c82 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.base/unicode.md @@ -0,0 +1,54 @@ +## The Unicode Standard, Unicode Character Database, Version 13.0.0 + +### Unicode Character Database +``` + +UNICODE, INC. LICENSE AGREEMENT - DATA FILES AND SOFTWARE + +See Terms of Use for definitions of Unicode Inc.'s +Data Files and Software. + +NOTICE TO USER: Carefully read the following legal agreement. +BY DOWNLOADING, INSTALLING, COPYING OR OTHERWISE USING UNICODE INC.'S +DATA FILES ("DATA FILES"), AND/OR SOFTWARE ("SOFTWARE"), +YOU UNEQUIVOCALLY ACCEPT, AND AGREE TO BE BOUND BY, ALL OF THE +TERMS AND CONDITIONS OF THIS AGREEMENT. +IF YOU DO NOT AGREE, DO NOT DOWNLOAD, INSTALL, COPY, DISTRIBUTE OR USE +THE DATA FILES OR SOFTWARE. + +COPYRIGHT AND PERMISSION NOTICE + +Copyright © 1991-2020 Unicode, Inc. All rights reserved. +Distributed under the Terms of Use in https://www.unicode.org/copyright.html. + +Permission is hereby granted, free of charge, to any person obtaining +a copy of the Unicode data files and any associated documentation +(the "Data Files") or Unicode software and any associated documentation +(the "Software") to deal in the Data Files or Software +without restriction, including without limitation the rights to use, +copy, modify, merge, publish, distribute, and/or sell copies of +the Data Files or Software, and to permit persons to whom the Data Files +or Software are furnished to do so, provided that either +(a) this copyright and permission notice appear with all copies +of the Data Files or Software, or +(b) this copyright and permission notice appear in associated +Documentation. + +THE DATA FILES AND SOFTWARE ARE PROVIDED "AS IS", WITHOUT WARRANTY OF +ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE +WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND +NONINFRINGEMENT OF THIRD PARTY RIGHTS. +IN NO EVENT SHALL THE COPYRIGHT HOLDER OR HOLDERS INCLUDED IN THIS +NOTICE BE LIABLE FOR ANY CLAIM, OR ANY SPECIAL INDIRECT OR CONSEQUENTIAL +DAMAGES, OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, +DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER +TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR +PERFORMANCE OF THE DATA FILES OR SOFTWARE. + +Except as contained in this notice, the name of a copyright holder +shall not be used in advertising or otherwise to promote the sale, +use or other dealings in these Data Files or Software without prior +written authorization of the copyright holder. + +``` + diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.base/wepoll.md b/inst/stics/V11.0.0/bin/jre17/legal/java.base/wepoll.md new file mode 100644 index 0000000..f2d9544 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.base/wepoll.md @@ -0,0 +1,34 @@ +## Bert Belder: wepoll v 1.5.8 + +### wepoll License +``` +wepoll - epoll for Windows +https://github.com/piscisaureus/wepoll + +Copyright 2012-2020, Bert Belder +All rights reserved. + +Redistribution and use in source and binary forms, with or without +modification, are permitted provided that the following conditions are +met: + + * Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + * Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + +THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS +"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT +LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR +A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT +OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT +LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, +DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY +THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT +(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE +OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + +``` diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.base/zlib.md b/inst/stics/V11.0.0/bin/jre17/legal/java.base/zlib.md new file mode 100644 index 0000000..d856af6 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.base/zlib.md @@ -0,0 +1,27 @@ +## zlib v1.2.13 + +### zlib License +
+
+Copyright (C) 1995-2022 Jean-loup Gailly and Mark Adler
+
+This software is provided 'as-is', without any express or implied
+warranty.  In no event will the authors be held liable for any damages
+arising from the use of this software.
+
+Permission is granted to anyone to use this software for any purpose,
+including commercial applications, and to alter it and redistribute it
+freely, subject to the following restrictions:
+
+1. The origin of this software must not be misrepresented; you must not
+   claim that you wrote the original software. If you use this software
+   in a product, an acknowledgment in the product documentation would be
+   appreciated but is not required.
+2. Altered source versions must be plainly marked as such, and must not be
+   misrepresented as being the original software.
+3. This notice may not be removed or altered from any source distribution.
+
+Jean-loup Gailly        Mark Adler
+jloup@gzip.org          madler@alumni.caltech.edu
+
+
diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.compiler/ADDITIONAL_LICENSE_INFO b/inst/stics/V11.0.0/bin/jre17/legal/java.compiler/ADDITIONAL_LICENSE_INFO new file mode 100644 index 0000000..3f7e921 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.compiler/ADDITIONAL_LICENSE_INFO @@ -0,0 +1 @@ +Please see ..\java.base\ADDITIONAL_LICENSE_INFO diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.compiler/ASSEMBLY_EXCEPTION b/inst/stics/V11.0.0/bin/jre17/legal/java.compiler/ASSEMBLY_EXCEPTION new file mode 100644 index 0000000..e09f918 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.compiler/ASSEMBLY_EXCEPTION @@ -0,0 +1 @@ +Please see ..\java.base\ASSEMBLY_EXCEPTION diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.compiler/LICENSE b/inst/stics/V11.0.0/bin/jre17/legal/java.compiler/LICENSE new file mode 100644 index 0000000..940481e --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.compiler/LICENSE @@ -0,0 +1 @@ +Please see ..\java.base\LICENSE diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.datatransfer/ADDITIONAL_LICENSE_INFO b/inst/stics/V11.0.0/bin/jre17/legal/java.datatransfer/ADDITIONAL_LICENSE_INFO new file mode 100644 index 0000000..3f7e921 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.datatransfer/ADDITIONAL_LICENSE_INFO @@ -0,0 +1 @@ +Please see ..\java.base\ADDITIONAL_LICENSE_INFO diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.datatransfer/ASSEMBLY_EXCEPTION b/inst/stics/V11.0.0/bin/jre17/legal/java.datatransfer/ASSEMBLY_EXCEPTION new file mode 100644 index 0000000..e09f918 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.datatransfer/ASSEMBLY_EXCEPTION @@ -0,0 +1 @@ +Please see ..\java.base\ASSEMBLY_EXCEPTION diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.datatransfer/LICENSE b/inst/stics/V11.0.0/bin/jre17/legal/java.datatransfer/LICENSE new file mode 100644 index 0000000..940481e --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.datatransfer/LICENSE @@ -0,0 +1 @@ +Please see ..\java.base\LICENSE diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/ADDITIONAL_LICENSE_INFO b/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/ADDITIONAL_LICENSE_INFO new file mode 100644 index 0000000..3f7e921 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/ADDITIONAL_LICENSE_INFO @@ -0,0 +1 @@ +Please see ..\java.base\ADDITIONAL_LICENSE_INFO diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/ASSEMBLY_EXCEPTION b/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/ASSEMBLY_EXCEPTION new file mode 100644 index 0000000..e09f918 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/ASSEMBLY_EXCEPTION @@ -0,0 +1 @@ +Please see ..\java.base\ASSEMBLY_EXCEPTION diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/LICENSE b/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/LICENSE new file mode 100644 index 0000000..940481e --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/LICENSE @@ -0,0 +1 @@ +Please see ..\java.base\LICENSE diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/colorimaging.md b/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/colorimaging.md new file mode 100644 index 0000000..eeb9932 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/colorimaging.md @@ -0,0 +1,7 @@ +## Eastman Kodak Company: Portions of color management and imaging software + +### Eastman Kodak Notice +
+Portions Copyright Eastman Kodak Company 1991-2003
+
+ diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/freetype.md b/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/freetype.md new file mode 100644 index 0000000..e74da88 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/freetype.md @@ -0,0 +1,650 @@ +## The FreeType Project: Freetype v2.12.1 + + +### FreeType Notice + +``` +FreeType comes with two licenses from which you can choose the one +which fits your needs best. + + The FreeType License (FTL) is the most commonly used one. It is + a BSD-style license with a credit clause and thus compatible with + the GNU Public License (GPL) version 3, but not with the + GPL version 2. + + The GNU General Public License (GPL), version 2. Use it for all + projects which use the GPLv2 also, or which need a license + compatible to the GPLv2. + +``` + +### FreeType License +``` + +Copyright (C) 1996-2022 by David Turner, Robert Wilhelm, and Werner Lemberg. +Copyright (C) 2007-2022 by Dereg Clegg and Michael Toftdal. +Copyright (C) 1996-2022 by Just van Rossum, David Turner, Robert Wilhelm, and Werner Lemberg. +Copyright (C) 2004-2022 by Masatake YAMATO and Redhat K.K. +Copyright (C) 2007-2022 by Derek Clegg and Michael Toftdal. +Copyright (C) 2007-2022 by David Turner. +Copyright (C) 2022 by David Turner, Robert Wilhelm, Werner Lemberg, and Moazin Khatti. +Copyright (C) 2007-2022 by Rahul Bhalerao , . +Copyright (C) 2008-2022 by David Turner, Robert Wilhelm, Werner Lemberg, and suzuki toshiya. +Copyright (C) 2019-2022 by Nikhil Ramakrishnan, David Turner, Robert Wilhelm, and Werner Lemberg. +Copyright (C) 2009-2022 by Oran Agra and Mickey Gabel. +Copyright (C) 2004-2022 by David Turner, Robert Wilhelm, Werner Lemberg, and George Williams. +Copyright (C) 2004-2022 by Masatake YAMATO, Red Hat K.K., +Copyright (C) 2003-2022 by Masatake YAMATO, Redhat K.K., +Copyright (C) 2013-2022 by Google, Inc. +Copyright (C) 2018-2022 by David Turner, Robert Wilhelm, Dominik Röttsches, and Werner Lemberg. +Copyright (C) 2005-2022 by David Turner, Robert Wilhelm, and Werner Lemberg. +Copyright 2013 by Google, Inc. + + + The FreeType Project LICENSE + ---------------------------- + + 2006-Jan-27 + + Copyright 1996-2002, 2006 by + David Turner, Robert Wilhelm, and Werner Lemberg + + + +Introduction +============ + + The FreeType Project is distributed in several archive packages; + some of them may contain, in addition to the FreeType font engine, + various tools and contributions which rely on, or relate to, the + FreeType Project. + + This license applies to all files found in such packages, and + which do not fall under their own explicit license. The license + affects thus the FreeType font engine, the test programs, + documentation and makefiles, at the very least. + + This license was inspired by the BSD, Artistic, and IJG + (Independent JPEG Group) licenses, which all encourage inclusion + and use of free software in commercial and freeware products + alike. As a consequence, its main points are that: + + o We don't promise that this software works. However, we will be + interested in any kind of bug reports. (`as is' distribution) + + o You can use this software for whatever you want, in parts or + full form, without having to pay us. (`royalty-free' usage) + + o You may not pretend that you wrote this software. If you use + it, or only parts of it, in a program, you must acknowledge + somewhere in your documentation that you have used the + FreeType code. (`credits') + + We specifically permit and encourage the inclusion of this + software, with or without modifications, in commercial products. + We disclaim all warranties covering The FreeType Project and + assume no liability related to The FreeType Project. + + + Finally, many people asked us for a preferred form for a + credit/disclaimer to use in compliance with this license. We thus + encourage you to use the following text: + + """ + Portions of this software are copyright © The FreeType + Project (www.freetype.org). All rights reserved. + """ + + Please replace with the value from the FreeType version you + actually use. + + +Legal Terms +=========== + +0. Definitions +-------------- + + Throughout this license, the terms `package', `FreeType Project', + and `FreeType archive' refer to the set of files originally + distributed by the authors (David Turner, Robert Wilhelm, and + Werner Lemberg) as the `FreeType Project', be they named as alpha, + beta or final release. + + `You' refers to the licensee, or person using the project, where + `using' is a generic term including compiling the project's source + code as well as linking it to form a `program' or `executable'. + This program is referred to as `a program using the FreeType + engine'. + + This license applies to all files distributed in the original + FreeType Project, including all source code, binaries and + documentation, unless otherwise stated in the file in its + original, unmodified form as distributed in the original archive. + If you are unsure whether or not a particular file is covered by + this license, you must contact us to verify this. + + The FreeType Project is copyright (C) 1996-2000 by David Turner, + Robert Wilhelm, and Werner Lemberg. All rights reserved except as + specified below. + +1. No Warranty +-------------- + + THE FREETYPE PROJECT IS PROVIDED `AS IS' WITHOUT WARRANTY OF ANY + KIND, EITHER EXPRESS OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, + WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR + PURPOSE. IN NO EVENT WILL ANY OF THE AUTHORS OR COPYRIGHT HOLDERS + BE LIABLE FOR ANY DAMAGES CAUSED BY THE USE OR THE INABILITY TO + USE, OF THE FREETYPE PROJECT. + +2. Redistribution +----------------- + + This license grants a worldwide, royalty-free, perpetual and + irrevocable right and license to use, execute, perform, compile, + display, copy, create derivative works of, distribute and + sublicense the FreeType Project (in both source and object code + forms) and derivative works thereof for any purpose; and to + authorize others to exercise some or all of the rights granted + herein, subject to the following conditions: + + o Redistribution of source code must retain this license file + (`FTL.TXT') unaltered; any additions, deletions or changes to + the original files must be clearly indicated in accompanying + documentation. The copyright notices of the unaltered, + original files must be preserved in all copies of source + files. + + o Redistribution in binary form must provide a disclaimer that + states that the software is based in part of the work of the + FreeType Team, in the distribution documentation. We also + encourage you to put an URL to the FreeType web page in your + documentation, though this isn't mandatory. + + These conditions apply to any software derived from or based on + the FreeType Project, not just the unmodified files. If you use + our work, you must acknowledge us. However, no fee need be paid + to us. + +3. Advertising +-------------- + + Neither the FreeType authors and contributors nor you shall use + the name of the other for commercial, advertising, or promotional + purposes without specific prior written permission. + + We suggest, but do not require, that you use one or more of the + following phrases to refer to this software in your documentation + or advertising materials: `FreeType Project', `FreeType Engine', + `FreeType library', or `FreeType Distribution'. + + As you have not signed this license, you are not required to + accept it. However, as the FreeType Project is copyrighted + material, only this license, or another one contracted with the + authors, grants you the right to use, distribute, and modify it. + Therefore, by using, distributing, or modifying the FreeType + Project, you indicate that you understand and accept all the terms + of this license. + +4. Contacts +----------- + + There are two mailing lists related to FreeType: + + o freetype@nongnu.org + + Discusses general use and applications of FreeType, as well as + future and wanted additions to the library and distribution. + If you are looking for support, start in this list if you + haven't found anything to help you in the documentation. + + o freetype-devel@nongnu.org + + Discusses bugs, as well as engine internals, design issues, + specific licenses, porting, etc. + + Our home page can be found at + + http://www.freetype.org + +``` + +### GPL v2 + +``` + GNU GENERAL PUBLIC LICENSE + Version 2, June 1991 + + Copyright (C) 1989, 1991 Free Software Foundation, Inc. + 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA + Everyone is permitted to copy and distribute verbatim copies + of this license document, but changing it is not allowed. + + Preamble + + The licenses for most software are designed to take away your +freedom to share and change it. By contrast, the GNU General Public +License is intended to guarantee your freedom to share and change free +software--to make sure the software is free for all its users. This +General Public License applies to most of the Free Software +Foundation's software and to any other program whose authors commit to +using it. (Some other Free Software Foundation software is covered by +the GNU Library General Public License instead.) You can apply it to +your programs, too. + + When we speak of free software, we are referring to freedom, not +price. Our General Public Licenses are designed to make sure that you +have the freedom to distribute copies of free software (and charge for +this service if you wish), that you receive source code or can get it +if you want it, that you can change the software or use pieces of it +in new free programs; and that you know you can do these things. + + To protect your rights, we need to make restrictions that forbid +anyone to deny you these rights or to ask you to surrender the rights. +These restrictions translate to certain responsibilities for you if you +distribute copies of the software, or if you modify it. + + For example, if you distribute copies of such a program, whether +gratis or for a fee, you must give the recipients all the rights that +you have. You must make sure that they, too, receive or can get the +source code. And you must show them these terms so they know their +rights. + + We protect your rights with two steps: (1) copyright the software, and +(2) offer you this license which gives you legal permission to copy, +distribute and/or modify the software. + + Also, for each author's protection and ours, we want to make certain +that everyone understands that there is no warranty for this free +software. If the software is modified by someone else and passed on, we +want its recipients to know that what they have is not the original, so +that any problems introduced by others will not reflect on the original +authors' reputations. + + Finally, any free program is threatened constantly by software +patents. We wish to avoid the danger that redistributors of a free +program will individually obtain patent licenses, in effect making the +program proprietary. To prevent this, we have made it clear that any +patent must be licensed for everyone's free use or not licensed at all. + + The precise terms and conditions for copying, distribution and +modification follow. + + GNU GENERAL PUBLIC LICENSE + TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION + + 0. This License applies to any program or other work which contains +a notice placed by the copyright holder saying it may be distributed +under the terms of this General Public License. The "Program", below, +refers to any such program or work, and a "work based on the Program" +means either the Program or any derivative work under copyright law: +that is to say, a work containing the Program or a portion of it, +either verbatim or with modifications and/or translated into another +language. (Hereinafter, translation is included without limitation in +the term "modification".) Each licensee is addressed as "you". + +Activities other than copying, distribution and modification are not +covered by this License; they are outside its scope. The act of +running the Program is not restricted, and the output from the Program +is covered only if its contents constitute a work based on the +Program (independent of having been made by running the Program). +Whether that is true depends on what the Program does. + + 1. You may copy and distribute verbatim copies of the Program's +source code as you receive it, in any medium, provided that you +conspicuously and appropriately publish on each copy an appropriate +copyright notice and disclaimer of warranty; keep intact all the +notices that refer to this License and to the absence of any warranty; +and give any other recipients of the Program a copy of this License +along with the Program. + +You may charge a fee for the physical act of transferring a copy, and +you may at your option offer warranty protection in exchange for a fee. + + 2. You may modify your copy or copies of the Program or any portion +of it, thus forming a work based on the Program, and copy and +distribute such modifications or work under the terms of Section 1 +above, provided that you also meet all of these conditions: + + a) You must cause the modified files to carry prominent notices + stating that you changed the files and the date of any change. + + b) You must cause any work that you distribute or publish, that in + whole or in part contains or is derived from the Program or any + part thereof, to be licensed as a whole at no charge to all third + parties under the terms of this License. + + c) If the modified program normally reads commands interactively + when run, you must cause it, when started running for such + interactive use in the most ordinary way, to print or display an + announcement including an appropriate copyright notice and a + notice that there is no warranty (or else, saying that you provide + a warranty) and that users may redistribute the program under + these conditions, and telling the user how to view a copy of this + License. (Exception: if the Program itself is interactive but + does not normally print such an announcement, your work based on + the Program is not required to print an announcement.) + +These requirements apply to the modified work as a whole. If +identifiable sections of that work are not derived from the Program, +and can be reasonably considered independent and separate works in +themselves, then this License, and its terms, do not apply to those +sections when you distribute them as separate works. But when you +distribute the same sections as part of a whole which is a work based +on the Program, the distribution of the whole must be on the terms of +this License, whose permissions for other licensees extend to the +entire whole, and thus to each and every part regardless of who wrote it. + +Thus, it is not the intent of this section to claim rights or contest +your rights to work written entirely by you; rather, the intent is to +exercise the right to control the distribution of derivative or +collective works based on the Program. + +In addition, mere aggregation of another work not based on the Program +with the Program (or with a work based on the Program) on a volume of +a storage or distribution medium does not bring the other work under +the scope of this License. + + 3. You may copy and distribute the Program (or a work based on it, +under Section 2) in object code or executable form under the terms of +Sections 1 and 2 above provided that you also do one of the following: + + a) Accompany it with the complete corresponding machine-readable + source code, which must be distributed under the terms of Sections + 1 and 2 above on a medium customarily used for software interchange; or, + + b) Accompany it with a written offer, valid for at least three + years, to give any third party, for a charge no more than your + cost of physically performing source distribution, a complete + machine-readable copy of the corresponding source code, to be + distributed under the terms of Sections 1 and 2 above on a medium + customarily used for software interchange; or, + + c) Accompany it with the information you received as to the offer + to distribute corresponding source code. (This alternative is + allowed only for noncommercial distribution and only if you + received the program in object code or executable form with such + an offer, in accord with Subsection b above.) + +The source code for a work means the preferred form of the work for +making modifications to it. For an executable work, complete source +code means all the source code for all modules it contains, plus any +associated interface definition files, plus the scripts used to +control compilation and installation of the executable. However, as a +special exception, the source code distributed need not include +anything that is normally distributed (in either source or binary +form) with the major components (compiler, kernel, and so on) of the +operating system on which the executable runs, unless that component +itself accompanies the executable. + +If distribution of executable or object code is made by offering +access to copy from a designated place, then offering equivalent +access to copy the source code from the same place counts as +distribution of the source code, even though third parties are not +compelled to copy the source along with the object code. + + 4. You may not copy, modify, sublicense, or distribute the Program +except as expressly provided under this License. Any attempt +otherwise to copy, modify, sublicense or distribute the Program is +void, and will automatically terminate your rights under this License. +However, parties who have received copies, or rights, from you under +this License will not have their licenses terminated so long as such +parties remain in full compliance. + + 5. You are not required to accept this License, since you have not +signed it. However, nothing else grants you permission to modify or +distribute the Program or its derivative works. These actions are +prohibited by law if you do not accept this License. Therefore, by +modifying or distributing the Program (or any work based on the +Program), you indicate your acceptance of this License to do so, and +all its terms and conditions for copying, distributing or modifying +the Program or works based on it. + + 6. Each time you redistribute the Program (or any work based on the +Program), the recipient automatically receives a license from the +original licensor to copy, distribute or modify the Program subject to +these terms and conditions. You may not impose any further +restrictions on the recipients' exercise of the rights granted herein. +You are not responsible for enforcing compliance by third parties to +this License. + + 7. If, as a consequence of a court judgment or allegation of patent +infringement or for any other reason (not limited to patent issues), +conditions are imposed on you (whether by court order, agreement or +otherwise) that contradict the conditions of this License, they do not +excuse you from the conditions of this License. If you cannot +distribute so as to satisfy simultaneously your obligations under this +License and any other pertinent obligations, then as a consequence you +may not distribute the Program at all. For example, if a patent +license would not permit royalty-free redistribution of the Program by +all those who receive copies directly or indirectly through you, then +the only way you could satisfy both it and this License would be to +refrain entirely from distribution of the Program. + +If any portion of this section is held invalid or unenforceable under +any particular circumstance, the balance of the section is intended to +apply and the section as a whole is intended to apply in other +circumstances. + +It is not the purpose of this section to induce you to infringe any +patents or other property right claims or to contest validity of any +such claims; this section has the sole purpose of protecting the +integrity of the free software distribution system, which is +implemented by public license practices. Many people have made +generous contributions to the wide range of software distributed +through that system in reliance on consistent application of that +system; it is up to the author/donor to decide if he or she is willing +to distribute software through any other system and a licensee cannot +impose that choice. + +This section is intended to make thoroughly clear what is believed to +be a consequence of the rest of this License. + + 8. If the distribution and/or use of the Program is restricted in +certain countries either by patents or by copyrighted interfaces, the +original copyright holder who places the Program under this License +may add an explicit geographical distribution limitation excluding +those countries, so that distribution is permitted only in or among +countries not thus excluded. In such case, this License incorporates +the limitation as if written in the body of this License. + + 9. The Free Software Foundation may publish revised and/or new versions +of the General Public License from time to time. Such new versions will +be similar in spirit to the present version, but may differ in detail to +address new problems or concerns. + +Each version is given a distinguishing version number. If the Program +specifies a version number of this License which applies to it and "any +later version", you have the option of following the terms and conditions +either of that version or of any later version published by the Free +Software Foundation. If the Program does not specify a version number of +this License, you may choose any version ever published by the Free Software +Foundation. + + 10. If you wish to incorporate parts of the Program into other free +programs whose distribution conditions are different, write to the author +to ask for permission. For software which is copyrighted by the Free +Software Foundation, write to the Free Software Foundation; we sometimes +make exceptions for this. Our decision will be guided by the two goals +of preserving the free status of all derivatives of our free software and +of promoting the sharing and reuse of software generally. + + NO WARRANTY + + 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY +FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN +OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES +PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED +OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS +TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE +PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, +REPAIR OR CORRECTION. + + 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING +WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR +REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, +INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING +OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED +TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY +YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER +PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE +POSSIBILITY OF SUCH DAMAGES. + + END OF TERMS AND CONDITIONS + + How to Apply These Terms to Your New Programs + + If you develop a new program, and you want it to be of the greatest +possible use to the public, the best way to achieve this is to make it +free software which everyone can redistribute and change under these terms. + + To do so, attach the following notices to the program. It is safest +to attach them to the start of each source file to most effectively +convey the exclusion of warranty; and each file should have at least +the "copyright" line and a pointer to where the full notice is found. + + + Copyright (C) + + This program is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program; if not, write to the Free Software + Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA + + +Also add information on how to contact you by electronic and paper mail. + +If the program is interactive, make it output a short notice like this +when it starts in an interactive mode: + + Gnomovision version 69, Copyright (C) year name of author + Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. + This is free software, and you are welcome to redistribute it + under certain conditions; type `show c' for details. + +The hypothetical commands `show w' and `show c' should show the appropriate +parts of the General Public License. Of course, the commands you use may +be called something other than `show w' and `show c'; they could even be +mouse-clicks or menu items--whatever suits your program. + +You should also get your employer (if you work as a programmer) or your +school, if any, to sign a "copyright disclaimer" for the program, if +necessary. Here is a sample; alter the names: + + Yoyodyne, Inc., hereby disclaims all copyright interest in the program + `Gnomovision' (which makes passes at compilers) written by James Hacker. + + , 1 April 1989 + Ty Coon, President of Vice + +This General Public License does not permit incorporating your program into +proprietary programs. If your program is a subroutine library, you may +consider it more useful to permit linking proprietary applications with the +library. If this is what you want to do, use the GNU Library General +Public License instead of this License. + +``` + +### Additional Freetype Attributions +``` + +--------------------------------- +The below license applies to the following files: +libfreetype/src/psaux/psarrst.c +libfreetype/src/psaux/psarrst.h +libfreetype/src/psaux/psblues.c +libfreetype/src/psaux/psblues.h +libfreetype/src/psaux/pserror.c +libfreetype/src/psaux/pserror.h +libfreetype/src/psaux/psfixed.h +libfreetype/src/psaux/psfont.c +libfreetype/src/psaux/psfont.h +libfreetype/src/psaux/psft.c +libfreetype/src/psaux/psft.h +libfreetype/src/psaux/psglue.h +libfreetype/src/psaux/pshints.c +libfreetype/src/psaux/pshints.h +libfreetype/src/psaux/psintrp.c +libfreetype/src/psaux/psintrp.h +libfreetype/src/psaux/psread.c +libfreetype/src/psaux/psread.h +libfreetype/src/psaux/psstack.c +libfreetype/src/psaux/psstack.h +libfreetype/src/psaux/pstypes.h + +Copyright 2006-2014 Adobe Systems Incorporated. + +This software, and all works of authorship, whether in source or +object code form as indicated by the copyright notice(s) included +herein (collectively, the "Work") is made available, and may only be +used, modified, and distributed under the FreeType Project License, +LICENSE.TXT. Additionally, subject to the terms and conditions of the +FreeType Project License, each contributor to the Work hereby grants +to any individual or legal entity exercising permissions granted by +the FreeType Project License and this section (hereafter, "You" or +"Your") a perpetual, worldwide, non-exclusive, no-charge, +royalty-free, irrevocable (except as stated in this section) patent +license to make, have made, use, offer to sell, sell, import, and +otherwise transfer the Work, where such license applies only to those +patent claims licensable by such contributor that are necessarily +infringed by their contribution(s) alone or by combination of their +contribution(s) with the Work to which such contribution(s) was +submitted. If You institute patent litigation against any entity +(including a cross-claim or counterclaim in a lawsuit) alleging that +the Work or a contribution incorporated within the Work constitutes +direct or contributory patent infringement, then any patent licenses +granted to You under this License for that Work shall terminate as of +the date such litigation is filed. + +By using, modifying, or distributing the Work you indicate that you +have read and understood the terms and conditions of the +FreeType Project License as well as those provided in this section, +and you accept them fully. + + +``` + +### MIT License +``` + +--------------------------------- +The below license applies to the following files: +libfreetype/include/freetype/internal/fthash.h +libfreetype/src/base/fthash.c + +Copyright 2000 Computing Research Labs, New Mexico State University +Copyright 2001-2015 + + Francesco Zappa Nardelli + +Permission is hereby granted, free of charge, to any person obtaining a +copy of this software and associated documentation files (the "Software"), +to deal in the Software without restriction, including without limitation +the rights to use, copy, modify, merge, publish, distribute, sublicense, +and/or sell copies of the Software, and to permit persons to whom the +Software is furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in +all copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL +THE COMPUTING RESEARCH LAB OR NEW MEXICO STATE UNIVERSITY BE LIABLE FOR ANY +CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT +OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR +THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +``` diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/giflib.md b/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/giflib.md new file mode 100644 index 0000000..0be4fb8 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/giflib.md @@ -0,0 +1,30 @@ +## GIFLIB v5.2.1 + +### GIFLIB License +``` + +The GIFLIB distribution is Copyright (c) 1997 Eric S. Raymond + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in +all copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +THE SOFTWARE. + + +https://sourceforge.net/p/giflib/code/ci/master/tree/openbsd-reallocarray.c + +Copyright (c) 2008 Otto Moerbeek +SPDX-License-Identifier: MIT diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/harfbuzz.md b/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/harfbuzz.md new file mode 100644 index 0000000..3426352 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/harfbuzz.md @@ -0,0 +1,95 @@ +## Harfbuzz v7.0.1 + +### Harfbuzz License + +https://github.com/harfbuzz/harfbuzz/blob/7.0.1/COPYING + +
+
+HarfBuzz is licensed under the so-called "Old MIT" license.  Details follow.
+For parts of HarfBuzz that are licensed under different licenses see individual
+files names COPYING in subdirectories where applicable.
+
+Copyright © 2010-2022  Google, Inc.
+Copyright © 2018-2020  Ebrahim Byagowi
+Copyright © 2004-2013  Red Hat, Inc.
+Copyright © 2019  Facebook, Inc.
+Copyright © 2007  Chris Wilson
+Copyright © 2018-2019 Adobe Inc.
+Copyright © 2006-2023 Behdad Esfahbod
+Copyright © 1998-2004  David Turner and Werner Lemberg
+Copyright © 2009  Keith Stribley
+Copyright © 2018  Khaled Hosny
+Copyright © 2016  Elie Roux 
+Copyright © 2016  Igalia S.L.
+Copyright © 2015  Mozilla Foundation.
+Copyright © 1999  David Turner
+Copyright © 2005  Werner Lemberg
+Copyright © 2013-2015  Alexei Podtelezhnikov
+Copyright © 2022 Matthias Clasen
+Copyright © 2011  Codethink Limited
+
+For full copyright notices consult the individual files in the package.
+
+
+Permission is hereby granted, without written agreement and without
+license or royalty fees, to use, copy, modify, and distribute this
+software and its documentation for any purpose, provided that the
+above copyright notice and the following two paragraphs appear in
+all copies of this software.
+
+IN NO EVENT SHALL THE COPYRIGHT HOLDER BE LIABLE TO ANY PARTY FOR
+DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES
+ARISING OUT OF THE USE OF THIS SOFTWARE AND ITS DOCUMENTATION, EVEN
+IF THE COPYRIGHT HOLDER HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH
+DAMAGE.
+
+THE COPYRIGHT HOLDER SPECIFICALLY DISCLAIMS ANY WARRANTIES, INCLUDING,
+BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND
+FITNESS FOR A PARTICULAR PURPOSE.  THE SOFTWARE PROVIDED HEREUNDER IS
+ON AN "AS IS" BASIS, AND THE COPYRIGHT HOLDER HAS NO OBLIGATION TO
+PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS.
+
+All source code, except for one section, is licensed as above. The one
+exception is licensed with a slightly different MIT variant:
+The contents of this directory are licensed under the following terms:
+
+---------------------------------
+The below license applies to the following files:
+libharfbuzz/hb-ucd.cc
+
+Copyright (C) 2012 Grigori Goronzy 
+
+Permission to use, copy, modify, and/or distribute this software for any
+purpose with or without fee is hereby granted, provided that the above
+copyright notice and this permission notice appear in all copies.
+
+THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES
+WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF
+MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR
+ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES
+WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN
+ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF
+OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE.
+
+
+ +### AUTHORS File Information +``` + +Behdad Esfahbod +David Corbett +David Turner +Ebrahim Byagowi +Garret Rieger +Jonathan Kew +Khaled Hosny +Lars Knoll +Martin Hosken +Owen Taylor +Roderick Sheeter +Roozbeh Pournader +Simon Hausmann +Werner Lemberg + +``` diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/jpeg.md b/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/jpeg.md new file mode 100644 index 0000000..1a0d41c --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/jpeg.md @@ -0,0 +1,77 @@ +## Independent JPEG Group: JPEG release 6b + +### JPEG License + +``` +**************************************************************************** + +Copyright (C) 1991-1998, Thomas G. Lane. + +This software is the work of Tom Lane, Philip Gladstone, Jim Boucher, +Lee Crocker, Julian Minguillon, Luis Ortiz, George Phillips, Davide Rossi, +Guido Vollbeding, Ge' Weijers, and other members of the Independent JPEG +Group. + +IJG is not affiliated with the official ISO JPEG standards committee. + +The authors make NO WARRANTY or representation, either express or implied, +with respect to this software, its quality, accuracy, merchantability, or +fitness for a particular purpose. This software is provided "AS IS", +and you, its user, assume the entire risk as to its quality and accuracy. + +This software is copyright (C) 1991-1998, Thomas G. Lane. +All Rights Reserved except as specified below. + +Permission is hereby granted to use, copy, modify, and distribute +this software (or portions thereof) for any purpose, without fee, +subject to these conditions: + +(1) If any part of the source code for this software is distributed, +then this README file must be included, with this copyright and no-warranty +notice unaltered; and any additions, deletions, or changes to the original +files must be clearly indicated in accompanying documentation. + +(2) If only executable code is distributed, then the accompanying documentation +must state that "this software is based in part on the work of the +Independent JPEG Group". + +(3) Permission for use of this software is granted only if the user accepts +full responsibility for any undesirable consequences; the authors accept +NO LIABILITY for damages of any kind. + +These conditions apply to any software derived from or based on the IJG code, +not just to the unmodified library. If you use our work, you ought to +acknowledge us. + +Permission is NOT granted for the use of any IJG author's name or company name +in advertising or publicity relating to this software or products derived +from it. This software may be referred to only as "the Independent JPEG +Group's software". + +We specifically permit and encourage the use of this software as the basis +of commercial products, provided that all warranty or liability claims are +assumed by the product vendor. + +It appears that the arithmetic coding option of the JPEG spec is covered +by patents owned by IBM, AT&T, and Mitsubishi. Hence arithmetic coding +cannot legally be used without obtaining one or more licenses. For this +reason, support for arithmetic coding has been removed from the free +JPEG software. (Since arithmetic coding provides only a marginal gain +over the unpatented Huffman mode, it is unlikely that very many +implementations will support it.) So far as we are aware, there are +no patent restrictions on the remaining code. + +The IJG distribution formerly included code to read and write GIF files. +To avoid entanglement with the Unisys LZW patent, GIF reading support +has been removed altogether, and the GIF writer has been simplified to +produce "uncompressed GIFs". This technique does not use the LZW algorithm; +the resulting GIF files are larger than usual, but are readable by all +standard GIF decoders. + +We are required to state that "The Graphics Interchange Format(c) is +the Copyright property of CompuServe Incorporated. GIF(sm) is a +Service Mark property of CompuServe Incorporated." + +**************************************************************************** +``` + diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/lcms.md b/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/lcms.md new file mode 100644 index 0000000..da86a9c --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/lcms.md @@ -0,0 +1,108 @@ +## Little Color Management System (LCMS) v2.15 + +### LCMS License +
+README.1ST file information
+
+LittleCMS core is released under MIT License
+
+---------------------------------
+
+Little CMS
+Copyright (c) 1998-2023 Marti Maria Saguer
+
+Permission is hereby granted, free of charge, to any person obtaining
+a copy of this software and associated documentation files (the
+"Software"), to deal in the Software without restriction, including
+without limitation the rights to use, copy, modify, merge, publish,
+distribute, sublicense, and/or sell copies of the Software, and to
+permit persons to whom the Software is furnished to do so, subject
+to the following conditions:
+
+The above copyright notice and this permission notice shall be
+included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
+IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
+CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
+TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
+SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+---------------------------------
+The below license applies to the following files:
+liblcms/cmssm.c
+
+Copyright 2001, softSurfer (www.softsurfer.com)
+
+This code may be freely used and modified for any purpose
+providing that this copyright notice is included with it.
+SoftSurfer makes no warranty for this code, and cannot be held
+liable for any real or imagined damage resulting from its use.
+Users of this code must verify correctness for their application.
+
+
+ +### AUTHORS File Information +``` + + +Main Author +------------ +Marti Maria + + +Contributors +------------ +Bob Friesenhahn +Kai-Uwe Behrmann +Stuart Nixon +Jordi Vilar +Richard Hughes +Auke Nauta +Chris Evans (Google) +Lorenzo Ridolfi +Robin Watts (Artifex) +Shawn Pedersen +Andrew Brygin +Samuli Suominen +Florian Hˆch +Aurelien Jarno +Claudiu Cebuc +Michael Vhrel (Artifex) +Michal Cihar +Daniel Kaneider +Mateusz Jurczyk (Google) +Paul Miller +SÈbastien LÈon +Christian Schmitz +XhmikosR +Stanislav Brabec (SuSe) +Leonhard Gruenschloss (Google) +Patrick Noffke +Christopher James Halse Rogers +John Hein +Thomas Weber (Debian) +Mark Allen +Noel Carboni +Sergei Trofimovic +Philipp Knechtges +Amyspark +Lovell Fuller +Eli Schwartz + +Special Thanks +-------------- +Artifex software +AlienSkin software +libVIPS +Jan Morovic +Jos Vernon (WebSupergoo) +Harald Schneider (Maxon) +Christian Albrecht +Dimitrios Anastassakis +Lemke Software +Tim Zaman + +``` diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/libpng.md b/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/libpng.md new file mode 100644 index 0000000..4f69da5 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/libpng.md @@ -0,0 +1,203 @@ +## libpng v1.6.38 + +### libpng License +
+
+COPYRIGHT NOTICE, DISCLAIMER, and LICENSE
+=========================================
+
+PNG Reference Library License version 2
+---------------------------------------
+
+Copyright (c) 1995-2022 The PNG Reference Library Authors.
+Copyright (c) 2018-2022 Cosmin Truta
+Copyright (c) 1998-2018 Glenn Randers-Pehrson
+Copyright (c) 1996-1997 Andreas Dilger
+Copyright (c) 1995-1996 Guy Eric Schalnat, Group 42, Inc.
+
+The software is supplied "as is", without warranty of any kind,
+express or implied, including, without limitation, the warranties
+of merchantability, fitness for a particular purpose, title, and
+non-infringement.  In no event shall the Copyright owners, or
+anyone distributing the software, be liable for any damages or
+other liability, whether in contract, tort or otherwise, arising
+from, out of, or in connection with the software, or the use or
+other dealings in the software, even if advised of the possibility
+of such damage.
+
+Permission is hereby granted to use, copy, modify, and distribute
+this software, or portions hereof, for any purpose, without fee,
+subject to the following restrictions:
+
+ 1. The origin of this software must not be misrepresented; you
+    must not claim that you wrote the original software.  If you
+    use this software in a product, an acknowledgment in the product
+    documentation would be appreciated, but is not required.
+
+ 2. Altered source versions must be plainly marked as such, and must
+    not be misrepresented as being the original software.
+
+ 3. This Copyright notice may not be removed or altered from any
+    source or altered source distribution.
+
+
+PNG Reference Library License version 1 (for libpng 0.5 through 1.6.35)
+-----------------------------------------------------------------------
+
+libpng versions 1.0.7, July 1, 2000, through 1.6.35, July 15, 2018 are
+Copyright (c) 2000-2002, 2004, 2006-2018 Glenn Randers-Pehrson, are
+derived from libpng-1.0.6, and are distributed according to the same
+disclaimer and license as libpng-1.0.6 with the following individuals
+added to the list of Contributing Authors:
+
+    Simon-Pierre Cadieux
+    Eric S. Raymond
+    Mans Rullgard
+    Cosmin Truta
+    Gilles Vollant
+    James Yu
+    Mandar Sahastrabuddhe
+    Google Inc.
+    Vadim Barkov
+
+and with the following additions to the disclaimer:
+
+    There is no warranty against interference with your enjoyment of
+    the library or against infringement.  There is no warranty that our
+    efforts or the library will fulfill any of your particular purposes
+    or needs.  This library is provided with all faults, and the entire
+    risk of satisfactory quality, performance, accuracy, and effort is
+    with the user.
+
+Some files in the "contrib" directory and some configure-generated
+files that are distributed with libpng have other copyright owners, and
+are released under other open source licenses.
+
+libpng versions 0.97, January 1998, through 1.0.6, March 20, 2000, are
+Copyright (c) 1998-2000 Glenn Randers-Pehrson, are derived from
+libpng-0.96, and are distributed according to the same disclaimer and
+license as libpng-0.96, with the following individuals added to the
+list of Contributing Authors:
+
+    Tom Lane
+    Glenn Randers-Pehrson
+    Willem van Schaik
+
+libpng versions 0.89, June 1996, through 0.96, May 1997, are
+Copyright (c) 1996-1997 Andreas Dilger, are derived from libpng-0.88,
+and are distributed according to the same disclaimer and license as
+libpng-0.88, with the following individuals added to the list of
+Contributing Authors:
+
+    John Bowler
+    Kevin Bracey
+    Sam Bushell
+    Magnus Holmgren
+    Greg Roelofs
+    Tom Tanner
+
+Some files in the "scripts" directory have other copyright owners,
+but are released under this license.
+
+libpng versions 0.5, May 1995, through 0.88, January 1996, are
+Copyright (c) 1995-1996 Guy Eric Schalnat, Group 42, Inc.
+
+For the purposes of this copyright and license, "Contributing Authors"
+is defined as the following set of individuals:
+
+    Andreas Dilger
+    Dave Martindale
+    Guy Eric Schalnat
+    Paul Schmidt
+    Tim Wegner
+
+The PNG Reference Library is supplied "AS IS".  The Contributing
+Authors and Group 42, Inc. disclaim all warranties, expressed or
+implied, including, without limitation, the warranties of
+merchantability and of fitness for any purpose.  The Contributing
+Authors and Group 42, Inc. assume no liability for direct, indirect,
+incidental, special, exemplary, or consequential damages, which may
+result from the use of the PNG Reference Library, even if advised of
+the possibility of such damage.
+
+Permission is hereby granted to use, copy, modify, and distribute this
+source code, or portions hereof, for any purpose, without fee, subject
+to the following restrictions:
+
+ 1. The origin of this source code must not be misrepresented.
+
+ 2. Altered versions must be plainly marked as such and must not
+    be misrepresented as being the original source.
+
+ 3. This Copyright notice may not be removed or altered from any
+    source or altered source distribution.
+
+The Contributing Authors and Group 42, Inc. specifically permit,
+without fee, and encourage the use of this source code as a component
+to supporting the PNG file format in commercial products.  If you use
+this source code in a product, acknowledgment is not required but would
+be appreciated.
+
+TRADEMARK
+=========
+
+The name "libpng" has not been registered by the Copyright owners
+as a trademark in any jurisdiction.  However, because libpng has
+been distributed and maintained world-wide, continually since 1995,
+the Copyright owners claim "common-law trademark protection" in any
+jurisdiction where common-law trademark is recognized.
+
+
+ +### AUTHORS File Information +``` +PNG REFERENCE LIBRARY AUTHORS +============================= + +This is the list of PNG Reference Library ("libpng") Contributing +Authors, for copyright and licensing purposes. + + * Andreas Dilger + * Cosmin Truta + * Dave Martindale + * Eric S. Raymond + * Gilles Vollant + * Glenn Randers-Pehrson + * Greg Roelofs + * Guy Eric Schalnat + * James Yu + * John Bowler + * Kevin Bracey + * Magnus Holmgren + * Mandar Sahastrabuddhe + * Mans Rullgard + * Matt Sarett + * Mike Klein + * Pascal Massimino + * Paul Schmidt + * Qiang Zhou + * Sam Bushell + * Samuel Williams + * Simon-Pierre Cadieux + * Tim Wegner + * Tom Lane + * Tom Tanner + * Vadim Barkov + * Willem van Schaik + * Zhijie Liang + * Arm Holdings + - Richard Townsend + * Google Inc. + - Matt Sarett + - Mike Klein + - Dan Field + - Sami Boukortt + +The build projects, the build scripts, the test scripts, and other +files in the "ci", "projects", "scripts" and "tests" directories, have +other copyright owners, but are released under the libpng license. + +Some files in the "contrib" directory, and some tools-generated files +that are distributed with libpng, have other copyright owners, and are +released under other open source licenses. +``` diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/mesa3d.md b/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/mesa3d.md new file mode 100644 index 0000000..cdaa1ac --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.desktop/mesa3d.md @@ -0,0 +1,134 @@ +## Mesa 3-D Graphics Library v21.0.3 + +### Mesa License + +``` +Copyright (C) 1999-2007 Brian Paul All Rights Reserved. + +Permission is hereby granted, free of charge, to any person obtaining a +copy of this software and associated documentation files (the "Software"), +to deal in the Software without restriction, including without limitation +the rights to use, copy, modify, merge, publish, distribute, sublicense, +and/or sell copies of the Software, and to permit persons to whom the +Software is furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included +in all copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS +OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL +THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. + +Attention, Contributors + +When contributing to the Mesa project you must agree to the licensing terms +of the component to which you're contributing. +The following section lists the primary components of the Mesa distribution +and their respective licenses. +Mesa Component Licenses + + + +Component Location License +------------------------------------------------------------------ +Main Mesa code src/mesa/ MIT +Device drivers src/mesa/drivers/* MIT, generally + +Gallium code src/gallium/ MIT + +Ext headers GL/glext.h Khronos + GL/glxext.h Khronos + GL/wglext.h Khronos + KHR/khrplatform.h Khronos + +***************************************************************************** + +---- +include/GL/gl.h : + + + Mesa 3-D graphics library + + Copyright (C) 1999-2006 Brian Paul All Rights Reserved. + Copyright (C) 2009 VMware, Inc. All Rights Reserved. + + Permission is hereby granted, free of charge, to any person obtaining a + copy of this software and associated documentation files (the "Software"), + to deal in the Software without restriction, including without limitation + the rights to use, copy, modify, merge, publish, distribute, sublicense, + and/or sell copies of the Software, and to permit persons to whom the + Software is furnished to do so, subject to the following conditions: + + The above copyright notice and this permission notice shall be included + in all copies or substantial portions of the Software. + + THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS + OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, + FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL + THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR + OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, + ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR + OTHER DEALINGS IN THE SOFTWARE. + + ***************************************************************************** + +---- +include/GL/glext.h +include/GL/glxext.h +include/GL/wglxext.h : + + + Copyright (c) 2013 - 2018 The Khronos Group Inc. + + Permission is hereby granted, free of charge, to any person obtaining a + copy of this software and/or associated documentation files (the + "Materials"), to deal in the Materials without restriction, including + without limitation the rights to use, copy, modify, merge, publish, + distribute, sublicense, and/or sell copies of the Materials, and to + permit persons to whom the Materials are furnished to do so, subject to + the following conditions: + + The above copyright notice and this permission notice shall be included + in all copies or substantial portions of the Materials. + + THE MATERIALS ARE PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, + EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF + MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. + IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY + CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, + TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE + MATERIALS OR THE USE OR OTHER DEALINGS IN THE MATERIALS. + + ***************************************************************************** + +---- +include/KHR/khrplatform.h : + + Copyright (c) 2008 - 2018 The Khronos Group Inc. + + Permission is hereby granted, free of charge, to any person obtaining a + copy of this software and/or associated documentation files (the + "Materials"), to deal in the Materials without restriction, including + without limitation the rights to use, copy, modify, merge, publish, + distribute, sublicense, and/or sell copies of the Materials, and to + permit persons to whom the Materials are furnished to do so, subject to + the following conditions: + + The above copyright notice and this permission notice shall be included + in all copies or substantial portions of the Materials. + + THE MATERIALS ARE PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, + EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF + MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. + IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY + CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, + TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE + MATERIALS OR THE USE OR OTHER DEALINGS IN THE MATERIALS. + + ***************************************************************************** + +``` diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.instrument/ADDITIONAL_LICENSE_INFO b/inst/stics/V11.0.0/bin/jre17/legal/java.instrument/ADDITIONAL_LICENSE_INFO new file mode 100644 index 0000000..3f7e921 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.instrument/ADDITIONAL_LICENSE_INFO @@ -0,0 +1 @@ +Please see ..\java.base\ADDITIONAL_LICENSE_INFO diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.instrument/ASSEMBLY_EXCEPTION b/inst/stics/V11.0.0/bin/jre17/legal/java.instrument/ASSEMBLY_EXCEPTION new file mode 100644 index 0000000..e09f918 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.instrument/ASSEMBLY_EXCEPTION @@ -0,0 +1 @@ +Please see ..\java.base\ASSEMBLY_EXCEPTION diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.instrument/LICENSE b/inst/stics/V11.0.0/bin/jre17/legal/java.instrument/LICENSE new file mode 100644 index 0000000..940481e --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.instrument/LICENSE @@ -0,0 +1 @@ +Please see ..\java.base\LICENSE diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.logging/ADDITIONAL_LICENSE_INFO b/inst/stics/V11.0.0/bin/jre17/legal/java.logging/ADDITIONAL_LICENSE_INFO new file mode 100644 index 0000000..3f7e921 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.logging/ADDITIONAL_LICENSE_INFO @@ -0,0 +1 @@ +Please see ..\java.base\ADDITIONAL_LICENSE_INFO diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.logging/ASSEMBLY_EXCEPTION b/inst/stics/V11.0.0/bin/jre17/legal/java.logging/ASSEMBLY_EXCEPTION new file mode 100644 index 0000000..e09f918 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.logging/ASSEMBLY_EXCEPTION @@ -0,0 +1 @@ +Please see ..\java.base\ASSEMBLY_EXCEPTION diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.logging/LICENSE b/inst/stics/V11.0.0/bin/jre17/legal/java.logging/LICENSE new file mode 100644 index 0000000..940481e --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.logging/LICENSE @@ -0,0 +1 @@ +Please see ..\java.base\LICENSE diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.management.rmi/ADDITIONAL_LICENSE_INFO b/inst/stics/V11.0.0/bin/jre17/legal/java.management.rmi/ADDITIONAL_LICENSE_INFO new file mode 100644 index 0000000..3f7e921 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.management.rmi/ADDITIONAL_LICENSE_INFO @@ -0,0 +1 @@ +Please see ..\java.base\ADDITIONAL_LICENSE_INFO diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.management.rmi/ASSEMBLY_EXCEPTION b/inst/stics/V11.0.0/bin/jre17/legal/java.management.rmi/ASSEMBLY_EXCEPTION new file mode 100644 index 0000000..e09f918 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.management.rmi/ASSEMBLY_EXCEPTION @@ -0,0 +1 @@ +Please see ..\java.base\ASSEMBLY_EXCEPTION diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.management.rmi/LICENSE b/inst/stics/V11.0.0/bin/jre17/legal/java.management.rmi/LICENSE new file mode 100644 index 0000000..940481e --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.management.rmi/LICENSE @@ -0,0 +1 @@ +Please see ..\java.base\LICENSE diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.management/ADDITIONAL_LICENSE_INFO b/inst/stics/V11.0.0/bin/jre17/legal/java.management/ADDITIONAL_LICENSE_INFO new file mode 100644 index 0000000..3f7e921 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.management/ADDITIONAL_LICENSE_INFO @@ -0,0 +1 @@ +Please see ..\java.base\ADDITIONAL_LICENSE_INFO diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.management/ASSEMBLY_EXCEPTION b/inst/stics/V11.0.0/bin/jre17/legal/java.management/ASSEMBLY_EXCEPTION new file mode 100644 index 0000000..e09f918 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.management/ASSEMBLY_EXCEPTION @@ -0,0 +1 @@ +Please see ..\java.base\ASSEMBLY_EXCEPTION diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.management/LICENSE b/inst/stics/V11.0.0/bin/jre17/legal/java.management/LICENSE new file mode 100644 index 0000000..940481e --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.management/LICENSE @@ -0,0 +1 @@ +Please see ..\java.base\LICENSE diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.naming/ADDITIONAL_LICENSE_INFO b/inst/stics/V11.0.0/bin/jre17/legal/java.naming/ADDITIONAL_LICENSE_INFO new file mode 100644 index 0000000..3f7e921 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.naming/ADDITIONAL_LICENSE_INFO @@ -0,0 +1 @@ +Please see ..\java.base\ADDITIONAL_LICENSE_INFO diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.naming/ASSEMBLY_EXCEPTION b/inst/stics/V11.0.0/bin/jre17/legal/java.naming/ASSEMBLY_EXCEPTION new file mode 100644 index 0000000..e09f918 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.naming/ASSEMBLY_EXCEPTION @@ -0,0 +1 @@ +Please see ..\java.base\ASSEMBLY_EXCEPTION diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.naming/LICENSE b/inst/stics/V11.0.0/bin/jre17/legal/java.naming/LICENSE new file mode 100644 index 0000000..940481e --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.naming/LICENSE @@ -0,0 +1 @@ +Please see ..\java.base\LICENSE diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.net.http/ADDITIONAL_LICENSE_INFO b/inst/stics/V11.0.0/bin/jre17/legal/java.net.http/ADDITIONAL_LICENSE_INFO new file mode 100644 index 0000000..3f7e921 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.net.http/ADDITIONAL_LICENSE_INFO @@ -0,0 +1 @@ +Please see ..\java.base\ADDITIONAL_LICENSE_INFO diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.net.http/ASSEMBLY_EXCEPTION b/inst/stics/V11.0.0/bin/jre17/legal/java.net.http/ASSEMBLY_EXCEPTION new file mode 100644 index 0000000..e09f918 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.net.http/ASSEMBLY_EXCEPTION @@ -0,0 +1 @@ +Please see ..\java.base\ASSEMBLY_EXCEPTION diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.net.http/LICENSE b/inst/stics/V11.0.0/bin/jre17/legal/java.net.http/LICENSE new file mode 100644 index 0000000..940481e --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.net.http/LICENSE @@ -0,0 +1 @@ +Please see ..\java.base\LICENSE diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.prefs/ADDITIONAL_LICENSE_INFO b/inst/stics/V11.0.0/bin/jre17/legal/java.prefs/ADDITIONAL_LICENSE_INFO new file mode 100644 index 0000000..3f7e921 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.prefs/ADDITIONAL_LICENSE_INFO @@ -0,0 +1 @@ +Please see ..\java.base\ADDITIONAL_LICENSE_INFO diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.prefs/ASSEMBLY_EXCEPTION b/inst/stics/V11.0.0/bin/jre17/legal/java.prefs/ASSEMBLY_EXCEPTION new file mode 100644 index 0000000..e09f918 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.prefs/ASSEMBLY_EXCEPTION @@ -0,0 +1 @@ +Please see ..\java.base\ASSEMBLY_EXCEPTION diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.prefs/LICENSE b/inst/stics/V11.0.0/bin/jre17/legal/java.prefs/LICENSE new file mode 100644 index 0000000..940481e --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.prefs/LICENSE @@ -0,0 +1 @@ +Please see ..\java.base\LICENSE diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.rmi/ADDITIONAL_LICENSE_INFO b/inst/stics/V11.0.0/bin/jre17/legal/java.rmi/ADDITIONAL_LICENSE_INFO new file mode 100644 index 0000000..3f7e921 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.rmi/ADDITIONAL_LICENSE_INFO @@ -0,0 +1 @@ +Please see ..\java.base\ADDITIONAL_LICENSE_INFO diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.rmi/ASSEMBLY_EXCEPTION b/inst/stics/V11.0.0/bin/jre17/legal/java.rmi/ASSEMBLY_EXCEPTION new file mode 100644 index 0000000..e09f918 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.rmi/ASSEMBLY_EXCEPTION @@ -0,0 +1 @@ +Please see ..\java.base\ASSEMBLY_EXCEPTION diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.rmi/LICENSE b/inst/stics/V11.0.0/bin/jre17/legal/java.rmi/LICENSE new file mode 100644 index 0000000..940481e --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.rmi/LICENSE @@ -0,0 +1 @@ +Please see ..\java.base\LICENSE diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.scripting/ADDITIONAL_LICENSE_INFO b/inst/stics/V11.0.0/bin/jre17/legal/java.scripting/ADDITIONAL_LICENSE_INFO new file mode 100644 index 0000000..3f7e921 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.scripting/ADDITIONAL_LICENSE_INFO @@ -0,0 +1 @@ +Please see ..\java.base\ADDITIONAL_LICENSE_INFO diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.scripting/ASSEMBLY_EXCEPTION b/inst/stics/V11.0.0/bin/jre17/legal/java.scripting/ASSEMBLY_EXCEPTION new file mode 100644 index 0000000..e09f918 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.scripting/ASSEMBLY_EXCEPTION @@ -0,0 +1 @@ +Please see ..\java.base\ASSEMBLY_EXCEPTION diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.scripting/LICENSE b/inst/stics/V11.0.0/bin/jre17/legal/java.scripting/LICENSE new file mode 100644 index 0000000..940481e --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.scripting/LICENSE @@ -0,0 +1 @@ +Please see ..\java.base\LICENSE diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.se/ADDITIONAL_LICENSE_INFO b/inst/stics/V11.0.0/bin/jre17/legal/java.se/ADDITIONAL_LICENSE_INFO new file mode 100644 index 0000000..3f7e921 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.se/ADDITIONAL_LICENSE_INFO @@ -0,0 +1 @@ +Please see ..\java.base\ADDITIONAL_LICENSE_INFO diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.se/ASSEMBLY_EXCEPTION b/inst/stics/V11.0.0/bin/jre17/legal/java.se/ASSEMBLY_EXCEPTION new file mode 100644 index 0000000..e09f918 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.se/ASSEMBLY_EXCEPTION @@ -0,0 +1 @@ +Please see ..\java.base\ASSEMBLY_EXCEPTION diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.se/LICENSE b/inst/stics/V11.0.0/bin/jre17/legal/java.se/LICENSE new file mode 100644 index 0000000..940481e --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.se/LICENSE @@ -0,0 +1 @@ +Please see ..\java.base\LICENSE diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.security.jgss/ADDITIONAL_LICENSE_INFO b/inst/stics/V11.0.0/bin/jre17/legal/java.security.jgss/ADDITIONAL_LICENSE_INFO new file mode 100644 index 0000000..3f7e921 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.security.jgss/ADDITIONAL_LICENSE_INFO @@ -0,0 +1 @@ +Please see ..\java.base\ADDITIONAL_LICENSE_INFO diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.security.jgss/ASSEMBLY_EXCEPTION b/inst/stics/V11.0.0/bin/jre17/legal/java.security.jgss/ASSEMBLY_EXCEPTION new file mode 100644 index 0000000..e09f918 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.security.jgss/ASSEMBLY_EXCEPTION @@ -0,0 +1 @@ +Please see ..\java.base\ASSEMBLY_EXCEPTION diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.security.jgss/LICENSE b/inst/stics/V11.0.0/bin/jre17/legal/java.security.jgss/LICENSE new file mode 100644 index 0000000..940481e --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.security.jgss/LICENSE @@ -0,0 +1 @@ +Please see ..\java.base\LICENSE diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.security.sasl/ADDITIONAL_LICENSE_INFO b/inst/stics/V11.0.0/bin/jre17/legal/java.security.sasl/ADDITIONAL_LICENSE_INFO new file mode 100644 index 0000000..3f7e921 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.security.sasl/ADDITIONAL_LICENSE_INFO @@ -0,0 +1 @@ +Please see ..\java.base\ADDITIONAL_LICENSE_INFO diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.security.sasl/ASSEMBLY_EXCEPTION b/inst/stics/V11.0.0/bin/jre17/legal/java.security.sasl/ASSEMBLY_EXCEPTION new file mode 100644 index 0000000..e09f918 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.security.sasl/ASSEMBLY_EXCEPTION @@ -0,0 +1 @@ +Please see ..\java.base\ASSEMBLY_EXCEPTION diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.security.sasl/LICENSE b/inst/stics/V11.0.0/bin/jre17/legal/java.security.sasl/LICENSE new file mode 100644 index 0000000..940481e --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.security.sasl/LICENSE @@ -0,0 +1 @@ +Please see ..\java.base\LICENSE diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.smartcardio/ADDITIONAL_LICENSE_INFO b/inst/stics/V11.0.0/bin/jre17/legal/java.smartcardio/ADDITIONAL_LICENSE_INFO new file mode 100644 index 0000000..3f7e921 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.smartcardio/ADDITIONAL_LICENSE_INFO @@ -0,0 +1 @@ +Please see ..\java.base\ADDITIONAL_LICENSE_INFO diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.smartcardio/ASSEMBLY_EXCEPTION b/inst/stics/V11.0.0/bin/jre17/legal/java.smartcardio/ASSEMBLY_EXCEPTION new file mode 100644 index 0000000..e09f918 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.smartcardio/ASSEMBLY_EXCEPTION @@ -0,0 +1 @@ +Please see ..\java.base\ASSEMBLY_EXCEPTION diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.smartcardio/LICENSE b/inst/stics/V11.0.0/bin/jre17/legal/java.smartcardio/LICENSE new file mode 100644 index 0000000..940481e --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.smartcardio/LICENSE @@ -0,0 +1 @@ +Please see ..\java.base\LICENSE diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.sql.rowset/ADDITIONAL_LICENSE_INFO b/inst/stics/V11.0.0/bin/jre17/legal/java.sql.rowset/ADDITIONAL_LICENSE_INFO new file mode 100644 index 0000000..3f7e921 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.sql.rowset/ADDITIONAL_LICENSE_INFO @@ -0,0 +1 @@ +Please see ..\java.base\ADDITIONAL_LICENSE_INFO diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.sql.rowset/ASSEMBLY_EXCEPTION b/inst/stics/V11.0.0/bin/jre17/legal/java.sql.rowset/ASSEMBLY_EXCEPTION new file mode 100644 index 0000000..e09f918 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.sql.rowset/ASSEMBLY_EXCEPTION @@ -0,0 +1 @@ +Please see ..\java.base\ASSEMBLY_EXCEPTION diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.sql.rowset/LICENSE b/inst/stics/V11.0.0/bin/jre17/legal/java.sql.rowset/LICENSE new file mode 100644 index 0000000..940481e --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.sql.rowset/LICENSE @@ -0,0 +1 @@ +Please see ..\java.base\LICENSE diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.sql/ADDITIONAL_LICENSE_INFO b/inst/stics/V11.0.0/bin/jre17/legal/java.sql/ADDITIONAL_LICENSE_INFO new file mode 100644 index 0000000..3f7e921 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.sql/ADDITIONAL_LICENSE_INFO @@ -0,0 +1 @@ +Please see ..\java.base\ADDITIONAL_LICENSE_INFO diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.sql/ASSEMBLY_EXCEPTION b/inst/stics/V11.0.0/bin/jre17/legal/java.sql/ASSEMBLY_EXCEPTION new file mode 100644 index 0000000..e09f918 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.sql/ASSEMBLY_EXCEPTION @@ -0,0 +1 @@ +Please see ..\java.base\ASSEMBLY_EXCEPTION diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.sql/LICENSE b/inst/stics/V11.0.0/bin/jre17/legal/java.sql/LICENSE new file mode 100644 index 0000000..940481e --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.sql/LICENSE @@ -0,0 +1 @@ +Please see ..\java.base\LICENSE diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.transaction.xa/ADDITIONAL_LICENSE_INFO b/inst/stics/V11.0.0/bin/jre17/legal/java.transaction.xa/ADDITIONAL_LICENSE_INFO new file mode 100644 index 0000000..3f7e921 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.transaction.xa/ADDITIONAL_LICENSE_INFO @@ -0,0 +1 @@ +Please see ..\java.base\ADDITIONAL_LICENSE_INFO diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.transaction.xa/ASSEMBLY_EXCEPTION b/inst/stics/V11.0.0/bin/jre17/legal/java.transaction.xa/ASSEMBLY_EXCEPTION new file mode 100644 index 0000000..e09f918 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.transaction.xa/ASSEMBLY_EXCEPTION @@ -0,0 +1 @@ +Please see ..\java.base\ASSEMBLY_EXCEPTION diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.transaction.xa/LICENSE b/inst/stics/V11.0.0/bin/jre17/legal/java.transaction.xa/LICENSE new file mode 100644 index 0000000..940481e --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.transaction.xa/LICENSE @@ -0,0 +1 @@ +Please see ..\java.base\LICENSE diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.xml.crypto/ADDITIONAL_LICENSE_INFO b/inst/stics/V11.0.0/bin/jre17/legal/java.xml.crypto/ADDITIONAL_LICENSE_INFO new file mode 100644 index 0000000..3f7e921 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.xml.crypto/ADDITIONAL_LICENSE_INFO @@ -0,0 +1 @@ +Please see ..\java.base\ADDITIONAL_LICENSE_INFO diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.xml.crypto/ASSEMBLY_EXCEPTION b/inst/stics/V11.0.0/bin/jre17/legal/java.xml.crypto/ASSEMBLY_EXCEPTION new file mode 100644 index 0000000..e09f918 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.xml.crypto/ASSEMBLY_EXCEPTION @@ -0,0 +1 @@ +Please see ..\java.base\ASSEMBLY_EXCEPTION diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.xml.crypto/LICENSE b/inst/stics/V11.0.0/bin/jre17/legal/java.xml.crypto/LICENSE new file mode 100644 index 0000000..940481e --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.xml.crypto/LICENSE @@ -0,0 +1 @@ +Please see ..\java.base\LICENSE diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.xml.crypto/santuario.md b/inst/stics/V11.0.0/bin/jre17/legal/java.xml.crypto/santuario.md new file mode 100644 index 0000000..fa87128 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.xml.crypto/santuario.md @@ -0,0 +1,225 @@ +## Apache Santuario v2.3.0 + +### Apache Santuario Notice +
+
+  Apache Santuario - XML Security for Java
+  Copyright 1999-2021 The Apache Software Foundation
+
+  This product includes software developed at
+  The Apache Software Foundation (http://www.apache.org/).
+
+  It was originally based on software copyright (c) 2001, Institute for
+  Data Communications Systems, .
+
+  The development of this software was partly funded by the European
+  Commission in the  project in the ISIS Programme.
+
+
+ +### Apache 2.0 License +
+
+                              Apache License
+                        Version 2.0, January 2004
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+TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
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diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.xml/ADDITIONAL_LICENSE_INFO b/inst/stics/V11.0.0/bin/jre17/legal/java.xml/ADDITIONAL_LICENSE_INFO new file mode 100644 index 0000000..3f7e921 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.xml/ADDITIONAL_LICENSE_INFO @@ -0,0 +1 @@ +Please see ..\java.base\ADDITIONAL_LICENSE_INFO diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.xml/ASSEMBLY_EXCEPTION b/inst/stics/V11.0.0/bin/jre17/legal/java.xml/ASSEMBLY_EXCEPTION new file mode 100644 index 0000000..e09f918 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.xml/ASSEMBLY_EXCEPTION @@ -0,0 +1 @@ +Please see ..\java.base\ASSEMBLY_EXCEPTION diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.xml/LICENSE b/inst/stics/V11.0.0/bin/jre17/legal/java.xml/LICENSE new file mode 100644 index 0000000..940481e --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.xml/LICENSE @@ -0,0 +1 @@ +Please see ..\java.base\LICENSE diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.xml/bcel.md b/inst/stics/V11.0.0/bin/jre17/legal/java.xml/bcel.md new file mode 100644 index 0000000..6dffd07 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.xml/bcel.md @@ -0,0 +1,219 @@ +## Apache Commons Byte Code Engineering Library (BCEL) Version 6.5.0 + +### Apache Commons BCEL Notice +
+
+    Apache Commons BCEL
+    Copyright 2004-2020 The Apache Software Foundation
+
+    This product includes software developed at
+    The Apache Software Foundation (https://www.apache.org/).
+
+
+ +### Apache 2.0 License +
+
+                              Apache License
+                        Version 2.0, January 2004
+                     http://www.apache.org/licenses/
+
+TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
+
+1. Definitions.
+
+   "License" shall mean the terms and conditions for use, reproduction,
+   and distribution as defined by Sections 1 through 9 of this document.
+
+   "Licensor" shall mean the copyright owner or entity authorized by
+   the copyright owner that is granting the License.
+
+   "Legal Entity" shall mean the union of the acting entity and all
+   other entities that control, are controlled by, or are under common
+   control with that entity. For the purposes of this definition,
+   "control" means (i) the power, direct or indirect, to cause the
+   direction or management of such entity, whether by contract or
+   otherwise, or (ii) ownership of fifty percent (50%) or more of the
+   outstanding shares, or (iii) beneficial ownership of such entity.
+
+   "You" (or "Your") shall mean an individual or Legal Entity
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+   including but not limited to software source code, documentation
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+   "Work" shall mean the work of authorship, whether in Source or
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+   "Derivative Works" shall mean any work, whether in Source or Object
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+   editorial revisions, annotations, elaborations, or other modifications
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+4. Redistribution. You may reproduce and distribute copies of the
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+   meet the following conditions:
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+   (a) You must give any other recipients of the Work or
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+
+   (b) You must cause any modified files to carry prominent notices
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+
+   (c) You must retain, in the Source form of any Derivative Works
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+   (d) If the Work includes a "NOTICE" text file as part of its
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+       notices within Derivative Works that You distribute, alongside
+       or as an addendum to the NOTICE text from the Work, provided
+       that such additional attribution notices cannot be construed
+       as modifying the License.
+
+   You may add Your own copyright statement to Your modifications and
+   may provide additional or different license terms and conditions
+   for use, reproduction, or distribution of Your modifications, or
+   for any such Derivative Works as a whole, provided Your use,
+   reproduction, and distribution of the Work otherwise complies with
+   the conditions stated in this License.
+
+5. Submission of Contributions. Unless You explicitly state otherwise,
+   any Contribution intentionally submitted for inclusion in the Work
+   by You to the Licensor shall be under the terms and conditions of
+   this License, without any additional terms or conditions.
+   Notwithstanding the above, nothing herein shall supersede or modify
+   the terms of any separate license agreement you may have executed
+   with Licensor regarding such Contributions.
+
+6. Trademarks. This License does not grant permission to use the trade
+   names, trademarks, service marks, or product names of the Licensor,
+   except as required for reasonable and customary use in describing the
+   origin of the Work and reproducing the content of the NOTICE file.
+
+7. Disclaimer of Warranty. Unless required by applicable law or
+   agreed to in writing, Licensor provides the Work (and each
+   Contributor provides its Contributions) on an "AS IS" BASIS,
+   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
+   implied, including, without limitation, any warranties or conditions
+   of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A
+   PARTICULAR PURPOSE. You are solely responsible for determining the
+   appropriateness of using or redistributing the Work and assume any
+   risks associated with Your exercise of permissions under this License.
+
+8. Limitation of Liability. In no event and under no legal theory,
+   whether in tort (including negligence), contract, or otherwise,
+   unless required by applicable law (such as deliberate and grossly
+   negligent acts) or agreed to in writing, shall any Contributor be
+   liable to You for damages, including any direct, indirect, special,
+   incidental, or consequential damages of any character arising as a
+   result of this License or out of the use or inability to use the
+   Work (including but not limited to damages for loss of goodwill,
+   work stoppage, computer failure or malfunction, or any and all
+   other commercial damages or losses), even if such Contributor
+   has been advised of the possibility of such damages.
+
+9. Accepting Warranty or Additional Liability. While redistributing
+   the Work or Derivative Works thereof, You may choose to offer,
+   and charge a fee for, acceptance of support, warranty, indemnity,
+   or other liability obligations and/or rights consistent with this
+   License. However, in accepting such obligations, You may act only
+   on Your own behalf and on Your sole responsibility, not on behalf
+   of any other Contributor, and only if You agree to indemnify,
+   defend, and hold each Contributor harmless for any liability
+   incurred by, or claims asserted against, such Contributor by reason
+   of your accepting any such warranty or additional liability.
+
+END OF TERMS AND CONDITIONS
+
+APPENDIX: How to apply the Apache License to your work.
+
+   To apply the Apache License to your work, attach the following
+   boilerplate notice, with the fields enclosed by brackets "[]"
+   replaced with your own identifying information. (Don't include
+   the brackets!)  The text should be enclosed in the appropriate
+   comment syntax for the file format. We also recommend that a
+   file or class name and description of purpose be included on the
+   same "printed page" as the copyright notice for easier
+   identification within third-party archives.
+
+Copyright [yyyy] [name of copyright owner]
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+
+
diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.xml/dom.md b/inst/stics/V11.0.0/bin/jre17/legal/java.xml/dom.md new file mode 100644 index 0000000..4fe8093 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.xml/dom.md @@ -0,0 +1,77 @@ +## DOM Level 3 Core Specification v1.0 + +### W3C Software Notice +
+Copyright © 2004 World Wide Web Consortium, (Massachusetts Institute of Technology,
+European Research Consortium for Informatics and Mathematics, Keio University).
+All Rights Reserved.
+
+The DOM bindings are published under the W3C Software Copyright Notice and License.
+The software license requires "Notice of any changes or modifications to the W3C
+files, including the date changes were made." Consequently, modified versions of
+the DOM bindings must document that they do not conform to the W3C standard; in the
+case of the IDL definitions, the pragma prefix can no longer be 'w3c.org'; in the
+case of the Java language binding, the package names can no longer be in the
+'org.w3c' package.
+
+ +### W3C License +
+
+W3C SOFTWARE NOTICE AND LICENSE
+
+http://www.w3.org/Consortium/Legal/2002/copyright-software-20021231
+
+This work (and included software, documentation such as READMEs, or other
+related items) is being provided by the copyright holders under the following
+license. By obtaining, using and/or copying this work, you (the licensee)
+agree that you have read, understood, and will comply with the following terms
+and conditions.
+
+Permission to copy, modify, and distribute this software and its
+documentation, with or without modification, for any purpose and without fee
+or royalty is hereby granted, provided that you include the following on ALL
+copies of the software and documentation or portions thereof, including
+modifications:
+
+   1.The full text of this NOTICE in a location viewable to users of the
+   redistributed or derivative work.
+
+   2.Any pre-existing intellectual property disclaimers, notices, or terms and
+   conditions. If none exist, the W3C Software Short Notice should be included
+   (hypertext is preferred, text is permitted) within the body of any
+   redistributed or derivative code.
+
+   3.Notice of any changes or modifications to the files, including the date
+   changes were made. (We recommend you provide URIs to the location from
+   which the code is derived.)
+
+THIS SOFTWARE AND DOCUMENTATION IS PROVIDED "AS IS," AND COPYRIGHT HOLDERS
+MAKE NO REPRESENTATIONS OR WARRANTIES, EXPRESS OR IMPLIED, INCLUDING BUT NOT
+LIMITED TO, WARRANTIES OF MERCHANTABILITY OR FITNESS FOR ANY PARTICULAR
+PURPOSE OR THAT THE USE OF THE SOFTWARE OR DOCUMENTATION WILL NOT INFRINGE ANY
+THIRD PARTY PATENTS,COPYRIGHTS, TRADEMARKS OR OTHER RIGHTS.
+
+COPYRIGHT HOLDERS WILL NOT BE LIABLE FOR ANY DIRECT, INDIRECT, SPECIAL
+OR CONSEQUENTIAL DAMAGES ARISING OUT OF ANY USE OF THE SOFTWARE OR
+DOCUMENTATION.  The name and trademarks of copyright holders may NOT be used
+in advertising or publicity pertaining to the software without specific,
+written prior permission. Title to copyright in this software and any
+associated documentation will at all times remain with copyright holders.
+
+____________________________________
+
+This formulation of W3C's notice and license became active on December 31
+2002. This version removes the copyright ownership notice such that this
+license can be used with materials other than those owned by the W3C, reflects
+that ERCIM is now a host of the W3C, includes references to this specific
+dated version of the license, and removes the ambiguous grant of "use".
+Otherwise, this version is the same as the previous version and is written so
+as to preserve the Free Software Foundation's assessment of GPL compatibility
+and OSI's certification under the Open Source Definition. Please see our
+Copyright FAQ for common questions about using materials from our site,
+including specific terms and conditions for packages like libwww, Amaya, and
+Jigsaw. Other questions about this notice can be directed to
+site-policy@w3.org.
+
+
diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.xml/jcup.md b/inst/stics/V11.0.0/bin/jre17/legal/java.xml/jcup.md new file mode 100644 index 0000000..bc566b7 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.xml/jcup.md @@ -0,0 +1,31 @@ +## CUP Parser Generator for Java v 0.11b + +### CUP Parser Generator License + +``` +Copyright 1996-2015 by Scott Hudson, Frank Flannery, C. Scott Ananian, Michael Petter + +Permission to use, copy, modify, and distribute this software and its +documentation for any purpose and without fee is hereby granted, provided +that the above copyright notice appear in all copies and that both +the copyright notice and this permission notice and warranty disclaimer +appear in supporting documentation, and that the names of the authors or +their employers not be used in advertising or publicity pertaining to +distribution of the software without specific, written prior permission. + +The authors and their employers disclaim all warranties with regard to +this software, including all implied warranties of merchantability and +fitness. In no event shall the authors or their employers be liable for +any special, indirect or consequential damages or any damages whatsoever +resulting from loss of use, data or profits, whether in an action of +contract, negligence or other tortious action, arising out of or in +connection with the use or performance of this software. +``` +--- +``` +This is an open source license. It is also GPL-Compatible (see entry for +"Standard ML of New Jersey"). The portions of CUP output which are hard-coded +into the CUP source code are (naturally) covered by this same license, as is +the CUP runtime code linked with the generated parser. +``` + diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.xml/xalan.md b/inst/stics/V11.0.0/bin/jre17/legal/java.xml/xalan.md new file mode 100644 index 0000000..924bce8 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.xml/xalan.md @@ -0,0 +1,255 @@ +## Apache Xalan v2.7.2 + +### Apache Xalan Notice +
+
+    ======================================================================================
+    ==  NOTICE file corresponding to the section 4d of the Apache License, Version 2.0, ==
+    ==  in this case for the Apache Xalan distribution.                                 ==
+    ======================================================================================
+
+   This product includes software developed by
+   The Apache Software Foundation (http://www.apache.org/).
+
+   Specifically, we only include the XSLTC portion of the source from the Xalan distribution. 
+   The Xalan project has two processors: an interpretive one (Xalan Interpretive) and a 
+   compiled one (The XSLT Compiler (XSLTC)). We *only* use the XSLTC part of Xalan; We use
+   the source from the packages that are part of the XSLTC sources.
+
+   Portions of this software was originally based on the following:
+
+     - software copyright (c) 1999-2002, Lotus Development Corporation., http://www.lotus.com.
+     - software copyright (c) 2001-2002, Sun Microsystems., http://www.sun.com.
+     - software copyright (c) 2003, IBM Corporation., http://www.ibm.com.
+     - voluntary contributions made by Ovidiu Predescu (ovidiu@cup.hp.com) on behalf of the
+       Apache Software Foundation and was originally developed at Hewlett Packard Company.
+
+
+ +### Apache 2.0 License +
+
+                              Apache License
+                        Version 2.0, January 2004
+                     http://www.apache.org/licenses/
+
+TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
+
+1. Definitions.
+
+   "License" shall mean the terms and conditions for use, reproduction,
+   and distribution as defined by Sections 1 through 9 of this document.
+
+   "Licensor" shall mean the copyright owner or entity authorized by
+   the copyright owner that is granting the License.
+
+   "Legal Entity" shall mean the union of the acting entity and all
+   other entities that control, are controlled by, or are under common
+   control with that entity. For the purposes of this definition,
+   "control" means (i) the power, direct or indirect, to cause the
+   direction or management of such entity, whether by contract or
+   otherwise, or (ii) ownership of fifty percent (50%) or more of the
+   outstanding shares, or (iii) beneficial ownership of such entity.
+
+   "You" (or "Your") shall mean an individual or Legal Entity
+   exercising permissions granted by this License.
+
+   "Source" form shall mean the preferred form for making modifications,
+   including but not limited to software source code, documentation
+   source, and configuration files.
+
+   "Object" form shall mean any form resulting from mechanical
+   transformation or translation of a Source form, including but
+   not limited to compiled object code, generated documentation,
+   and conversions to other media types.
+
+   "Work" shall mean the work of authorship, whether in Source or
+   Object form, made available under the License, as indicated by a
+   copyright notice that is included in or attached to the work
+   (an example is provided in the Appendix below).
+
+   "Derivative Works" shall mean any work, whether in Source or Object
+   form, that is based on (or derived from) the Work and for which the
+   editorial revisions, annotations, elaborations, or other modifications
+   represent, as a whole, an original work of authorship. For the purposes
+   of this License, Derivative Works shall not include works that remain
+   separable from, or merely link (or bind by name) to the interfaces of,
+   the Work and Derivative Works thereof.
+
+   "Contribution" shall mean any work of authorship, including
+   the original version of the Work and any modifications or additions
+   to that Work or Derivative Works thereof, that is intentionally
+   submitted to Licensor for inclusion in the Work by the copyright owner
+   or by an individual or Legal Entity authorized to submit on behalf of
+   the copyright owner. For the purposes of this definition, "submitted"
+   means any form of electronic, verbal, or written communication sent
+   to the Licensor or its representatives, including but not limited to
+   communication on electronic mailing lists, source code control systems,
+   and issue tracking systems that are managed by, or on behalf of, the
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+   excluding communication that is conspicuously marked or otherwise
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+
+   "Contributor" shall mean Licensor and any individual or Legal Entity
+   on behalf of whom a Contribution has been received by Licensor and
+   subsequently incorporated within the Work.
+
+2. Grant of Copyright License. Subject to the terms and conditions of
+   this License, each Contributor hereby grants to You a perpetual,
+   worldwide, non-exclusive, no-charge, royalty-free, irrevocable
+   copyright license to reproduce, prepare Derivative Works of,
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+   Work and such Derivative Works in Source or Object form.
+
+3. Grant of Patent License. Subject to the terms and conditions of
+   this License, each Contributor hereby grants to You a perpetual,
+   worldwide, non-exclusive, no-charge, royalty-free, irrevocable
+   (except as stated in this section) patent license to make, have made,
+   use, offer to sell, sell, import, and otherwise transfer the Work,
+   where such license applies only to those patent claims licensable
+   by such Contributor that are necessarily infringed by their
+   Contribution(s) alone or by combination of their Contribution(s)
+   with the Work to which such Contribution(s) was submitted. If You
+   institute patent litigation against any entity (including a
+   cross-claim or counterclaim in a lawsuit) alleging that the Work
+   or a Contribution incorporated within the Work constitutes direct
+   or contributory patent infringement, then any patent licenses
+   granted to You under this License for that Work shall terminate
+   as of the date such litigation is filed.
+
+4. Redistribution. You may reproduce and distribute copies of the
+   Work or Derivative Works thereof in any medium, with or without
+   modifications, and in Source or Object form, provided that You
+   meet the following conditions:
+
+   (a) You must give any other recipients of the Work or
+       Derivative Works a copy of this License; and
+
+   (b) You must cause any modified files to carry prominent notices
+       stating that You changed the files; and
+
+   (c) You must retain, in the Source form of any Derivative Works
+       that You distribute, all copyright, patent, trademark, and
+       attribution notices from the Source form of the Work,
+       excluding those notices that do not pertain to any part of
+       the Derivative Works; and
+
+   (d) If the Work includes a "NOTICE" text file as part of its
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+       include a readable copy of the attribution notices contained
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+       of the following places: within a NOTICE text file distributed
+       as part of the Derivative Works; within the Source form or
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+       within a display generated by the Derivative Works, if and
+       wherever such third-party notices normally appear. The contents
+       of the NOTICE file are for informational purposes only and
+       do not modify the License. You may add Your own attribution
+       notices within Derivative Works that You distribute, alongside
+       or as an addendum to the NOTICE text from the Work, provided
+       that such additional attribution notices cannot be construed
+       as modifying the License.
+
+   You may add Your own copyright statement to Your modifications and
+   may provide additional or different license terms and conditions
+   for use, reproduction, or distribution of Your modifications, or
+   for any such Derivative Works as a whole, provided Your use,
+   reproduction, and distribution of the Work otherwise complies with
+   the conditions stated in this License.
+
+5. Submission of Contributions. Unless You explicitly state otherwise,
+   any Contribution intentionally submitted for inclusion in the Work
+   by You to the Licensor shall be under the terms and conditions of
+   this License, without any additional terms or conditions.
+   Notwithstanding the above, nothing herein shall supersede or modify
+   the terms of any separate license agreement you may have executed
+   with Licensor regarding such Contributions.
+
+6. Trademarks. This License does not grant permission to use the trade
+   names, trademarks, service marks, or product names of the Licensor,
+   except as required for reasonable and customary use in describing the
+   origin of the Work and reproducing the content of the NOTICE file.
+
+7. Disclaimer of Warranty. Unless required by applicable law or
+   agreed to in writing, Licensor provides the Work (and each
+   Contributor provides its Contributions) on an "AS IS" BASIS,
+   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
+   implied, including, without limitation, any warranties or conditions
+   of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A
+   PARTICULAR PURPOSE. You are solely responsible for determining the
+   appropriateness of using or redistributing the Work and assume any
+   risks associated with Your exercise of permissions under this License.
+
+8. Limitation of Liability. In no event and under no legal theory,
+   whether in tort (including negligence), contract, or otherwise,
+   unless required by applicable law (such as deliberate and grossly
+   negligent acts) or agreed to in writing, shall any Contributor be
+   liable to You for damages, including any direct, indirect, special,
+   incidental, or consequential damages of any character arising as a
+   result of this License or out of the use or inability to use the
+   Work (including but not limited to damages for loss of goodwill,
+   work stoppage, computer failure or malfunction, or any and all
+   other commercial damages or losses), even if such Contributor
+   has been advised of the possibility of such damages.
+
+9. Accepting Warranty or Additional Liability. While redistributing
+   the Work or Derivative Works thereof, You may choose to offer,
+   and charge a fee for, acceptance of support, warranty, indemnity,
+   or other liability obligations and/or rights consistent with this
+   License. However, in accepting such obligations, You may act only
+   on Your own behalf and on Your sole responsibility, not on behalf
+   of any other Contributor, and only if You agree to indemnify,
+   defend, and hold each Contributor harmless for any liability
+   incurred by, or claims asserted against, such Contributor by reason
+   of your accepting any such warranty or additional liability.
+
+END OF TERMS AND CONDITIONS
+
+APPENDIX: How to apply the Apache License to your work.
+
+   To apply the Apache License to your work, attach the following
+   boilerplate notice, with the fields enclosed by brackets "[]"
+   replaced with your own identifying information. (Don't include
+   the brackets!)  The text should be enclosed in the appropriate
+   comment syntax for the file format. We also recommend that a
+   file or class name and description of purpose be included on the
+   same "printed page" as the copyright notice for easier
+   identification within third-party archives.
+
+Copyright [yyyy] [name of copyright owner]
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+
+
+JLEX COPYRIGHT NOTICE, LICENSE AND DISCLAIMER.
+Copyright 1996-2003 by Elliot Joel Berk and C. Scott Ananian
+Permission to use, copy, modify, and distribute this software and 
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+provided that the above copyright notice appear in all copies and that 
+both the copyright notice and this permission notice and warranty 
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+The authors and their employers disclaim all warranties with regard to 
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+any special, indirect or consequential damages or any damages whatsoever 
+resulting from loss of use, data or profits, whether in an action of 
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+connection with the use or performance of this software.The portions of 
+JLex output which are hard-coded into the JLex source code are (naturally) 
+covered by this same license.
+
+
diff --git a/inst/stics/V11.0.0/bin/jre17/legal/java.xml/xerces.md b/inst/stics/V11.0.0/bin/jre17/legal/java.xml/xerces.md new file mode 100644 index 0000000..3790b7a --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/legal/java.xml/xerces.md @@ -0,0 +1,229 @@ +## Apache Xerces v2.12.2 + +### Apache Xerces Notice +
+    =========================================================================
+    == NOTICE file corresponding to section 4(d) of the Apache License,    ==
+    == Version 2.0, in this case for the Apache Xerces Java distribution.  ==
+    =========================================================================
+    
+    Apache Xerces Java
+    Copyright 1999-2022 The Apache Software Foundation
+
+    This product includes software developed at
+    The Apache Software Foundation (http://www.apache.org/).
+
+    Portions of this software were originally based on the following:
+    - software copyright (c) 1999, IBM Corporation., http://www.ibm.com.
+    - software copyright (c) 1999, Sun Microsystems., http://www.sun.com.
+    - voluntary contributions made by Paul Eng on behalf of the
+    Apache Software Foundation that were originally developed at iClick, Inc.,
+    software copyright (c) 1999.
+
+ +### Apache 2.0 License +
+
+                              Apache License
+                        Version 2.0, January 2004
+                     http://www.apache.org/licenses/
+
+TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
+
+1. Definitions.
+
+   "License" shall mean the terms and conditions for use, reproduction,
+   and distribution as defined by Sections 1 through 9 of this document.
+
+   "Licensor" shall mean the copyright owner or entity authorized by
+   the copyright owner that is granting the License.
+
+   "Legal Entity" shall mean the union of the acting entity and all
+   other entities that control, are controlled by, or are under common
+   control with that entity. For the purposes of this definition,
+   "control" means (i) the power, direct or indirect, to cause the
+   direction or management of such entity, whether by contract or
+   otherwise, or (ii) ownership of fifty percent (50%) or more of the
+   outstanding shares, or (iii) beneficial ownership of such entity.
+
+   "You" (or "Your") shall mean an individual or Legal Entity
+   exercising permissions granted by this License.
+
+   "Source" form shall mean the preferred form for making modifications,
+   including but not limited to software source code, documentation
+   source, and configuration files.
+
+   "Object" form shall mean any form resulting from mechanical
+   transformation or translation of a Source form, including but
+   not limited to compiled object code, generated documentation,
+   and conversions to other media types.
+
+   "Work" shall mean the work of authorship, whether in Source or
+   Object form, made available under the License, as indicated by a
+   copyright notice that is included in or attached to the work
+   (an example is provided in the Appendix below).
+
+   "Derivative Works" shall mean any work, whether in Source or Object
+   form, that is based on (or derived from) the Work and for which the
+   editorial revisions, annotations, elaborations, or other modifications
+   represent, as a whole, an original work of authorship. For the purposes
+   of this License, Derivative Works shall not include works that remain
+   separable from, or merely link (or bind by name) to the interfaces of,
+   the Work and Derivative Works thereof.
+
+   "Contribution" shall mean any work of authorship, including
+   the original version of the Work and any modifications or additions
+   to that Work or Derivative Works thereof, that is intentionally
+   submitted to Licensor for inclusion in the Work by the copyright owner
+   or by an individual or Legal Entity authorized to submit on behalf of
+   the copyright owner. For the purposes of this definition, "submitted"
+   means any form of electronic, verbal, or written communication sent
+   to the Licensor or its representatives, including but not limited to
+   communication on electronic mailing lists, source code control systems,
+   and issue tracking systems that are managed by, or on behalf of, the
+   Licensor for the purpose of discussing and improving the Work, but
+   excluding communication that is conspicuously marked or otherwise
+   designated in writing by the copyright owner as "Not a Contribution."
+
+   "Contributor" shall mean Licensor and any individual or Legal Entity
+   on behalf of whom a Contribution has been received by Licensor and
+   subsequently incorporated within the Work.
+
+2. Grant of Copyright License. Subject to the terms and conditions of
+   this License, each Contributor hereby grants to You a perpetual,
+   worldwide, non-exclusive, no-charge, royalty-free, irrevocable
+   copyright license to reproduce, prepare Derivative Works of,
+   publicly display, publicly perform, sublicense, and distribute the
+   Work and such Derivative Works in Source or Object form.
+
+3. Grant of Patent License. Subject to the terms and conditions of
+   this License, each Contributor hereby grants to You a perpetual,
+   worldwide, non-exclusive, no-charge, royalty-free, irrevocable
+   (except as stated in this section) patent license to make, have made,
+   use, offer to sell, sell, import, and otherwise transfer the Work,
+   where such license applies only to those patent claims licensable
+   by such Contributor that are necessarily infringed by their
+   Contribution(s) alone or by combination of their Contribution(s)
+   with the Work to which such Contribution(s) was submitted. If You
+   institute patent litigation against any entity (including a
+   cross-claim or counterclaim in a lawsuit) alleging that the Work
+   or a Contribution incorporated within the Work constitutes direct
+   or contributory patent infringement, then any patent licenses
+   granted to You under this License for that Work shall terminate
+   as of the date such litigation is filed.
+
+4. Redistribution. You may reproduce and distribute copies of the
+   Work or Derivative Works thereof in any medium, with or without
+   modifications, and in Source or Object form, provided that You
+   meet the following conditions:
+
+   (a) You must give any other recipients of the Work or
+       Derivative Works a copy of this License; and
+
+   (b) You must cause any modified files to carry prominent notices
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diff --git a/inst/stics/V11.0.0/bin/jre17/lib/classlist b/inst/stics/V11.0.0/bin/jre17/lib/classlist new file mode 100644 index 0000000..1996d98 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/lib/classlist @@ -0,0 +1,1408 @@ +# NOTE: Do not modify this file. +# +# This file is generated via the -XX:DumpLoadedClassList= option +# and is used at CDS archive dump time (see -Xshare:dump). +# +java/lang/Object +java/io/Serializable +java/lang/Comparable +java/lang/CharSequence +java/lang/constant/Constable +java/lang/constant/ConstantDesc +java/lang/String +java/lang/reflect/AnnotatedElement +java/lang/reflect/GenericDeclaration +java/lang/reflect/Type +java/lang/invoke/TypeDescriptor +java/lang/invoke/TypeDescriptor$OfField +java/lang/Class +java/lang/Cloneable +java/lang/ClassLoader +java/lang/System +java/lang/Throwable +java/lang/Error +java/lang/ThreadDeath +java/lang/Exception +java/lang/RuntimeException +java/lang/SecurityManager +java/security/ProtectionDomain +java/security/AccessControlContext +java/security/AccessController +java/security/SecureClassLoader +java/lang/ReflectiveOperationException +java/lang/ClassNotFoundException +java/lang/Record +java/lang/LinkageError +java/lang/NoClassDefFoundError +java/lang/ClassCastException +java/lang/ArrayStoreException +java/lang/VirtualMachineError +java/lang/InternalError +java/lang/OutOfMemoryError +java/lang/StackOverflowError +java/lang/IllegalMonitorStateException +java/lang/ref/Reference +java/lang/ref/SoftReference +java/lang/ref/WeakReference +java/lang/ref/FinalReference +java/lang/ref/PhantomReference +java/lang/ref/Finalizer +java/lang/Runnable +java/lang/Thread +java/lang/Thread$UncaughtExceptionHandler +java/lang/ThreadGroup +java/util/Dictionary +java/util/Map +java/util/Hashtable +java/util/Properties +java/lang/Module +java/lang/reflect/AccessibleObject +java/lang/reflect/Member +java/lang/reflect/Field +java/lang/reflect/Parameter +java/lang/reflect/Executable +java/lang/reflect/Method +java/lang/reflect/Constructor +jdk/internal/reflect/MagicAccessorImpl +jdk/internal/reflect/MethodAccessor +jdk/internal/reflect/MethodAccessorImpl +jdk/internal/reflect/ConstructorAccessor +jdk/internal/reflect/ConstructorAccessorImpl +jdk/internal/reflect/DelegatingClassLoader +jdk/internal/reflect/ConstantPool +jdk/internal/reflect/FieldAccessor +jdk/internal/reflect/FieldAccessorImpl +jdk/internal/reflect/UnsafeFieldAccessorImpl +jdk/internal/reflect/UnsafeStaticFieldAccessorImpl +java/lang/annotation/Annotation +jdk/internal/reflect/CallerSensitive +jdk/internal/reflect/NativeConstructorAccessorImpl +java/lang/invoke/MethodHandle +java/lang/invoke/DirectMethodHandle +java/lang/invoke/VarHandle +java/lang/invoke/MemberName +java/lang/invoke/ResolvedMethodName +java/lang/invoke/MethodHandleNatives +java/lang/invoke/LambdaForm +java/lang/invoke/TypeDescriptor$OfMethod +java/lang/invoke/MethodType +java/lang/BootstrapMethodError +java/lang/invoke/CallSite +jdk/internal/invoke/NativeEntryPoint +java/lang/invoke/MethodHandleNatives$CallSiteContext +java/lang/invoke/ConstantCallSite +java/lang/invoke/MutableCallSite +java/lang/invoke/VolatileCallSite +java/lang/AssertionStatusDirectives +java/lang/Appendable +java/lang/AbstractStringBuilder +java/lang/StringBuffer +java/lang/StringBuilder +jdk/internal/misc/UnsafeConstants +jdk/internal/misc/Unsafe +jdk/internal/module/Modules +java/lang/AutoCloseable +java/io/Closeable +java/io/InputStream +java/io/ByteArrayInputStream +java/net/URL +java/util/jar/Manifest +jdk/internal/loader/BuiltinClassLoader +jdk/internal/loader/ClassLoaders +jdk/internal/loader/ClassLoaders$AppClassLoader +jdk/internal/loader/ClassLoaders$PlatformClassLoader +java/security/CodeSource +java/util/AbstractMap +java/util/concurrent/ConcurrentMap +java/util/concurrent/ConcurrentHashMap +java/lang/Iterable +java/util/Collection +java/util/AbstractCollection +java/util/List +java/util/AbstractList +java/util/RandomAccess +java/util/ArrayList +java/lang/StackTraceElement +java/nio/Buffer +java/lang/StackWalker +java/lang/StackStreamFactory$AbstractStackWalker +java/lang/StackWalker$StackFrame +java/lang/StackFrameInfo +java/lang/LiveStackFrame +java/lang/LiveStackFrameInfo +java/util/concurrent/locks/AbstractOwnableSynchronizer +java/lang/Boolean +java/lang/Character +java/lang/Number +java/lang/Float +java/lang/Double +java/lang/Byte +java/lang/Short +java/lang/Integer +java/lang/Long +java/util/Iterator +java/lang/reflect/RecordComponent +jdk/internal/vm/vector/VectorSupport +jdk/internal/vm/vector/VectorSupport$VectorPayload +jdk/internal/vm/vector/VectorSupport$Vector +jdk/internal/vm/vector/VectorSupport$VectorMask +jdk/internal/vm/vector/VectorSupport$VectorShuffle +java/lang/NullPointerException +java/lang/ArithmeticException +java/io/ObjectStreamField +java/util/Comparator +java/lang/String$CaseInsensitiveComparator +java/lang/Module$ArchivedData +jdk/internal/misc/CDS +java/util/Set +java/util/ImmutableCollections$AbstractImmutableCollection +java/util/ImmutableCollections$AbstractImmutableSet +java/util/ImmutableCollections$Set12 +java/util/Objects +java/util/ImmutableCollections +java/util/ImmutableCollections$AbstractImmutableList +java/util/ImmutableCollections$ListN +java/util/ImmutableCollections$SetN +java/util/ImmutableCollections$AbstractImmutableMap +java/util/ImmutableCollections$MapN +jdk/internal/access/JavaLangReflectAccess +java/lang/reflect/ReflectAccess +jdk/internal/access/SharedSecrets +java/lang/invoke/MethodHandles +java/lang/invoke/MemberName$Factory +java/security/Guard +java/security/Permission +java/security/BasicPermission +java/lang/reflect/ReflectPermission +java/lang/StringLatin1 +java/lang/invoke/MethodHandles$Lookup +jdk/internal/reflect/Reflection +java/lang/Math +java/util/HashMap +java/util/AbstractSet +java/util/ImmutableCollections$MapN$1 +java/util/ImmutableCollections$MapN$MapNIterator +java/util/Map$Entry +java/util/KeyValueHolder +java/util/HashMap$Node +java/util/LinkedHashMap$Entry +java/util/HashMap$TreeNode +java/lang/Runtime +java/util/concurrent/locks/Lock +java/util/concurrent/locks/ReentrantLock +java/util/concurrent/ConcurrentHashMap$Segment +java/util/concurrent/ConcurrentHashMap$CounterCell +java/util/concurrent/ConcurrentHashMap$Node +java/util/concurrent/locks/LockSupport +java/util/concurrent/ConcurrentHashMap$ReservationNode +java/security/PrivilegedAction +jdk/internal/reflect/ReflectionFactory$GetReflectionFactoryAction +jdk/internal/reflect/ReflectionFactory +java/lang/ref/Reference$ReferenceHandler +jdk/internal/ref/Cleaner +java/lang/ref/ReferenceQueue +java/lang/ref/ReferenceQueue$Null +java/lang/ref/ReferenceQueue$Lock +jdk/internal/access/JavaLangRefAccess +java/lang/ref/Reference$1 +java/lang/ref/Finalizer$FinalizerThread +jdk/internal/access/JavaLangAccess +java/lang/System$2 +jdk/internal/util/SystemProps +jdk/internal/util/SystemProps$Raw +java/lang/StringConcatHelper +jdk/internal/misc/VM +java/lang/VersionProps +java/util/Arrays +java/lang/CharacterData +java/lang/CharacterDataLatin1 +java/lang/Integer$IntegerCache +java/util/HashMap$EntrySet +java/util/HashMap$HashIterator +java/util/HashMap$EntryIterator +jdk/internal/util/StaticProperty +java/io/FileInputStream +java/io/FileDescriptor +jdk/internal/access/JavaIOFileDescriptorAccess +java/io/FileDescriptor$1 +java/io/Flushable +java/io/OutputStream +java/io/FileOutputStream +java/io/FilterInputStream +java/io/BufferedInputStream +java/io/FilterOutputStream +java/io/PrintStream +java/io/BufferedOutputStream +java/io/Writer +java/io/OutputStreamWriter +java/nio/charset/Charset +java/nio/charset/spi/CharsetProvider +sun/nio/cs/StandardCharsets +java/lang/ThreadLocal +java/util/concurrent/atomic/AtomicInteger +sun/security/action/GetPropertyAction +sun/util/PreHashedMap +sun/nio/cs/StandardCharsets$Aliases +sun/nio/cs/StandardCharsets$Cache +sun/nio/cs/HistoricallyNamedCharset +sun/nio/cs/Unicode +sun/nio/cs/UTF_8 +sun/nio/cs/ISO_8859_1 +sun/nio/cs/US_ASCII +java/nio/charset/StandardCharsets +sun/nio/cs/UTF_16BE +sun/nio/cs/UTF_16LE +sun/nio/cs/UTF_16 +sun/nio/cs/StandardCharsets$Classes +jdk/internal/util/ArraysSupport +sun/nio/cs/MS1252 +java/lang/Class$ReflectionData +java/lang/Class$Atomic +java/lang/Class$1 +java/lang/reflect/Modifier +jdk/internal/reflect/DelegatingConstructorAccessorImpl +sun/nio/cs/StreamEncoder +java/nio/charset/CharsetEncoder +sun/nio/cs/ArrayEncoder +sun/nio/cs/SingleByte$Encoder +sun/nio/cs/MS1252$Holder +java/lang/StringUTF16 +sun/nio/cs/SingleByte +java/nio/charset/CodingErrorAction +java/nio/ByteBuffer +jdk/internal/misc/ScopedMemoryAccess +jdk/internal/access/JavaNioAccess +java/nio/Buffer$1 +java/nio/HeapByteBuffer +java/nio/ByteOrder +java/io/BufferedWriter +java/lang/Terminator +jdk/internal/misc/Signal$Handler +java/lang/Terminator$1 +jdk/internal/misc/Signal +java/util/Hashtable$Entry +jdk/internal/misc/Signal$NativeHandler +jdk/internal/misc/OSEnvironment +sun/io/Win32ErrorMode +java/util/Collections +java/util/Collections$EmptySet +java/util/Collections$EmptyList +java/util/Collections$EmptyMap +java/lang/IllegalArgumentException +java/lang/invoke/MethodHandleStatics +jdk/internal/module/ModuleBootstrap +java/lang/module/ModuleDescriptor +sun/invoke/util/VerifyAccess +jdk/internal/access/JavaLangModuleAccess +java/lang/module/ModuleDescriptor$1 +java/io/File +java/io/DefaultFileSystem +java/io/FileSystem +java/io/WinNTFileSystem +jdk/internal/module/ModulePatcher +jdk/internal/module/ModuleBootstrap$Counters +jdk/internal/module/ArchivedBootLayer +java/nio/file/Watchable +java/nio/file/Path +java/nio/file/FileSystems +sun/nio/fs/DefaultFileSystemProvider +java/nio/file/spi/FileSystemProvider +sun/nio/fs/AbstractFileSystemProvider +sun/nio/fs/WindowsFileSystemProvider +java/lang/Enum +java/nio/file/OpenOption +java/nio/file/StandardOpenOption +java/nio/file/FileSystem +sun/nio/fs/WindowsFileSystem +java/util/HashSet +java/util/Arrays$ArrayList +java/util/Arrays$ArrayItr +java/util/Collections$UnmodifiableCollection +java/util/Collections$UnmodifiableSet +sun/nio/fs/WindowsPathParser +sun/nio/fs/WindowsPathType +sun/nio/fs/WindowsPathParser$Result +sun/nio/fs/WindowsPath +java/lang/module/ModuleFinder +jdk/internal/module/ModulePath +java/util/jar/Attributes$Name +java/lang/reflect/Array +jdk/internal/perf/PerfCounter +jdk/internal/perf/Perf$GetPerfAction +jdk/internal/perf/Perf +sun/nio/ch/DirectBuffer +java/nio/MappedByteBuffer +java/nio/DirectByteBuffer +java/nio/Bits +java/util/concurrent/atomic/AtomicLong +jdk/internal/misc/VM$BufferPool +java/nio/Bits$1 +java/nio/LongBuffer +java/nio/DirectLongBufferU +java/util/zip/ZipConstants +java/util/zip/ZipFile +java/util/jar/JarFile +sun/security/action/GetBooleanAction +jdk/internal/access/JavaUtilZipFileAccess +java/util/zip/ZipFile$1 +jdk/internal/access/JavaUtilJarAccess +java/util/jar/JavaUtilJarAccessImpl +java/lang/Runtime$Version +java/util/ImmutableCollections$List12 +java/util/Optional +jdk/internal/module/ArchivedModuleGraph +jdk/internal/module/SystemModuleFinders +java/net/URI +jdk/internal/access/JavaNetUriAccess +java/net/URI$1 +jdk/internal/module/SystemModulesMap +jdk/internal/module/SystemModules +jdk/internal/module/SystemModules$all +jdk/internal/module/Builder +java/lang/module/ModuleDescriptor$Requires +java/lang/module/ModuleDescriptor$Exports +java/lang/module/ModuleDescriptor$Opens +java/lang/module/ModuleDescriptor$Provides +java/lang/module/ModuleDescriptor$Version +java/lang/module/ModuleDescriptor$Modifier +java/lang/module/ModuleDescriptor$Requires$Modifier +jdk/internal/module/ModuleTarget +jdk/internal/module/ModuleHashes +jdk/internal/module/ModuleResolution +java/lang/module/ModuleReference +java/util/function/Supplier +jdk/internal/module/SystemModuleFinders$2 +jdk/internal/module/ModuleReferenceImpl +jdk/internal/module/SystemModuleFinders$SystemModuleFinder +jdk/internal/loader/BootLoader +jdk/internal/loader/NativeLibraries +jdk/internal/loader/ClassLoaderHelper +java/util/Queue +java/util/Deque +java/util/ArrayDeque +jdk/internal/loader/ArchivedClassLoaders +jdk/internal/loader/ClassLoaders$BootClassLoader +java/security/cert/Certificate +java/lang/ClassLoader$ParallelLoaders +java/util/WeakHashMap +java/util/WeakHashMap$Entry +java/util/Collections$SetFromMap +java/util/WeakHashMap$KeySet +jdk/internal/access/JavaSecurityAccess +java/security/ProtectionDomain$JavaSecurityAccessImpl +java/security/ProtectionDomain$Key +java/security/Principal +jdk/internal/loader/URLClassPath +java/net/URLStreamHandlerFactory +java/net/URL$DefaultFactory +jdk/internal/access/JavaNetURLAccess +java/net/URL$3 +java/io/File$PathStatus +sun/net/www/ParseUtil +java/util/HexFormat +java/net/URLStreamHandler +sun/net/www/protocol/file/Handler +sun/net/util/IPAddressUtil +jdk/internal/util/Preconditions +jdk/internal/module/ServicesCatalog +jdk/internal/loader/AbstractClassLoaderValue +jdk/internal/loader/ClassLoaderValue +jdk/internal/loader/BuiltinClassLoader$LoadedModule +java/util/ImmutableCollections$SetN$SetNIterator +java/lang/module/ModuleFinder$2 +jdk/internal/module/DefaultRoots +java/util/Spliterators +java/util/Spliterators$EmptySpliterator +java/util/Spliterator +java/util/Spliterators$EmptySpliterator$OfRef +java/util/Spliterator$OfPrimitive +java/util/Spliterator$OfInt +java/util/Spliterators$EmptySpliterator$OfInt +java/util/Spliterator$OfLong +java/util/Spliterators$EmptySpliterator$OfLong +java/util/Spliterator$OfDouble +java/util/Spliterators$EmptySpliterator$OfDouble +java/util/Spliterators$IteratorSpliterator +java/util/stream/StreamSupport +java/util/stream/PipelineHelper +java/util/stream/BaseStream +java/util/stream/AbstractPipeline +java/util/stream/Stream +java/util/stream/ReferencePipeline +java/util/stream/ReferencePipeline$Head +java/util/stream/StreamOpFlag +java/util/stream/StreamOpFlag$Type +java/util/stream/StreamOpFlag$MaskBuilder +java/util/EnumMap +java/util/EnumMap$1 +java/lang/PublicMethods$MethodList +java/lang/PublicMethods$Key +java/lang/Class$3 +sun/reflect/annotation/AnnotationParser +jdk/internal/reflect/NativeMethodAccessorImpl +jdk/internal/reflect/DelegatingMethodAccessorImpl +java/lang/invoke/LambdaMetafactory +java/lang/invoke/MethodType$ConcurrentWeakInternSet +java/lang/Void +java/lang/invoke/MethodTypeForm +java/lang/invoke/MethodType$ConcurrentWeakInternSet$WeakEntry +sun/invoke/util/Wrapper +sun/invoke/util/Wrapper$Format +java/lang/invoke/LambdaForm$NamedFunction +java/lang/invoke/DirectMethodHandle$Holder +sun/invoke/util/ValueConversions +java/lang/invoke/MethodHandleImpl +java/lang/invoke/Invokers +java/lang/invoke/LambdaForm$Kind +java/lang/NoSuchMethodException +java/lang/invoke/LambdaForm$BasicType +java/lang/invoke/LambdaForm$Name +java/lang/invoke/LambdaForm$Holder +java/lang/invoke/InvokerBytecodeGenerator +java/lang/invoke/InvokerBytecodeGenerator$2 +java/lang/invoke/MethodHandleImpl$Intrinsic +java/lang/Readable +java/nio/CharBuffer +java/nio/HeapCharBuffer +java/lang/StringCoding +java/nio/charset/CoderResult +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic L7_L +java/lang/Module$ReflectionData +java/lang/WeakPairMap +java/lang/WeakPairMap$Pair +java/lang/WeakPairMap$Pair$Lookup +java/util/function/Predicate +java/lang/IncompatibleClassChangeError +java/lang/NoSuchMethodError +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic LL_I +jdk/internal/org/objectweb/asm/ClassVisitor +jdk/internal/org/objectweb/asm/ClassWriter +jdk/internal/org/objectweb/asm/SymbolTable +jdk/internal/org/objectweb/asm/Symbol +jdk/internal/org/objectweb/asm/SymbolTable$Entry +jdk/internal/org/objectweb/asm/ByteVector +sun/invoke/util/BytecodeDescriptor +jdk/internal/org/objectweb/asm/MethodVisitor +jdk/internal/org/objectweb/asm/MethodWriter +jdk/internal/org/objectweb/asm/Type +jdk/internal/org/objectweb/asm/Label +jdk/internal/org/objectweb/asm/Frame +jdk/internal/org/objectweb/asm/AnnotationVisitor +jdk/internal/org/objectweb/asm/AnnotationWriter +java/lang/invoke/InvokerBytecodeGenerator$ClassData +sun/invoke/util/VerifyType +sun/invoke/empty/Empty +java/util/ArrayList$Itr +jdk/internal/org/objectweb/asm/FieldVisitor +jdk/internal/org/objectweb/asm/FieldWriter +jdk/internal/org/objectweb/asm/Attribute +jdk/internal/org/objectweb/asm/Handler +java/lang/invoke/MethodHandles$Lookup$ClassFile +java/lang/invoke/MethodHandles$Lookup$ClassOption +java/lang/invoke/MethodHandles$Lookup$ClassDefiner +java/lang/invoke/BootstrapMethodInvoker +java/lang/invoke/VarHandle$AccessMode +java/lang/invoke/VarHandle$AccessType +java/lang/invoke/Invokers$Holder +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial L8_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.Invokers$Holder invokeExact_MT L8_L +jdk/internal/access/JavaLangInvokeAccess +java/lang/invoke/MethodHandleImpl$1 +java/lang/invoke/AbstractValidatingLambdaMetafactory +java/lang/invoke/InnerClassLambdaMetafactory +jdk/internal/org/objectweb/asm/Handle +jdk/internal/org/objectweb/asm/ConstantDynamic +java/lang/invoke/MethodHandleInfo +java/lang/invoke/InfoFromMemberName +java/lang/invoke/LambdaProxyClassArchive +java/lang/invoke/TypeConvertingMethodAdapter +java/lang/invoke/InnerClassLambdaMetafactory$ForwardingMethodGenerator +jdk/internal/org/objectweb/asm/ClassReader +java/util/ImmutableCollections$Set12$1 +java/lang/invoke/InnerClassLambdaMetafactory$1 +java/lang/invoke/BoundMethodHandle +java/lang/invoke/ClassSpecializer +java/lang/invoke/BoundMethodHandle$Specializer +java/util/function/Function +java/lang/invoke/ClassSpecializer$1 +java/lang/invoke/ClassSpecializer$SpeciesData +java/lang/invoke/BoundMethodHandle$SpeciesData +java/lang/invoke/ClassSpecializer$Factory +java/lang/invoke/BoundMethodHandle$Specializer$Factory +java/lang/invoke/SimpleMethodHandle +@lambda-form-invoker [SPECIES_RESOLVE] java.lang.invoke.SimpleMethodHandle +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic L3_L +java/lang/NoSuchFieldException +java/lang/invoke/BoundMethodHandle$Species_L +@lambda-form-invoker [SPECIES_RESOLVE] java.lang.invoke.BoundMethodHandle$Species_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic L4_L +java/lang/invoke/DirectMethodHandle$2 +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder getReference LL_L +java/lang/invoke/DirectMethodHandle$Accessor +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.LambdaForm$Holder identity_L LL_L +java/lang/invoke/DelegatingMethodHandle +java/lang/invoke/MethodHandleImpl$IntrinsicMethodHandle +java/lang/invoke/DelegatingMethodHandle$Holder +sun/invoke/util/Wrapper$1 +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.LambdaForm$Holder zero_L L_L +java/lang/invoke/LambdaFormEditor +java/lang/invoke/LambdaFormEditor$TransformKey +java/lang/invoke/LambdaFormBuffer +java/lang/invoke/LambdaFormEditor$Transform +jdk/internal/ref/CleanerFactory +java/util/concurrent/ThreadFactory +jdk/internal/ref/CleanerFactory$1 +java/lang/ref/Cleaner +java/lang/ref/Cleaner$1 +jdk/internal/ref/CleanerImpl +java/lang/ref/Cleaner$Cleanable +jdk/internal/ref/PhantomCleanable +jdk/internal/ref/CleanerImpl$PhantomCleanableRef +jdk/internal/ref/CleanerImpl$CleanerCleanable +jdk/internal/misc/InnocuousThread +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial LL_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.Invokers$Holder linkToTargetMethod L_L +@lambda-proxy jdk/internal/module/DefaultRoots test ()Ljava/util/function/Predicate; (Ljava/lang/Object;)Z REF_invokeStatic jdk/internal/module/DefaultRoots lambda$compute$0 (Ljava/lang/module/ModuleReference;)Z (Ljava/lang/module/ModuleReference;)Z +java/util/stream/ReferencePipeline$StatelessOp +java/util/stream/ReferencePipeline$2 +java/util/stream/StreamShape +@lambda-proxy jdk/internal/module/DefaultRoots apply ()Ljava/util/function/Function; (Ljava/lang/Object;)Ljava/lang/Object; REF_invokeVirtual java/lang/module/ModuleReference descriptor ()Ljava/lang/module/ModuleDescriptor; (Ljava/lang/module/ModuleReference;)Ljava/lang/module/ModuleDescriptor; +java/util/stream/ReferencePipeline$3 +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic L3_I +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder newInvokeSpecial LL_L +java/lang/invoke/DirectMethodHandle$Constructor +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial L3_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.Invokers$Holder linkToTargetMethod LL_L +@lambda-proxy jdk/internal/module/DefaultRoots test (Ljava/lang/module/ModuleFinder;)Ljava/util/function/Predicate; (Ljava/lang/Object;)Z REF_invokeStatic jdk/internal/module/DefaultRoots lambda$compute$1 (Ljava/lang/module/ModuleFinder;Ljava/lang/module/ModuleDescriptor;)Z (Ljava/lang/module/ModuleDescriptor;)Z +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeVirtual LL_L +@lambda-proxy jdk/internal/module/DefaultRoots apply ()Ljava/util/function/Function; (Ljava/lang/Object;)Ljava/lang/Object; REF_invokeVirtual java/lang/module/ModuleDescriptor name ()Ljava/lang/String; (Ljava/lang/module/ModuleDescriptor;)Ljava/lang/String; +java/util/stream/Collectors +java/util/stream/Collector$Characteristics +java/util/EnumSet +java/util/RegularEnumSet +java/util/stream/Collector +java/util/stream/Collectors$CollectorImpl +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder newInvokeSpecial L_L +@lambda-proxy java/util/stream/Collectors get ()Ljava/util/function/Supplier; ()Ljava/lang/Object; REF_newInvokeSpecial java/util/HashSet ()V ()Ljava/util/HashSet; +java/util/function/BiConsumer +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeInterface L3_I +java/lang/invoke/DirectMethodHandle$Interface +@lambda-proxy java/util/stream/Collectors accept ()Ljava/util/function/BiConsumer; (Ljava/lang/Object;Ljava/lang/Object;)V REF_invokeInterface java/util/Set add (Ljava/lang/Object;)Z (Ljava/util/HashSet;Ljava/lang/Object;)V +java/util/function/BiFunction +java/util/function/BinaryOperator +@lambda-proxy java/util/stream/Collectors apply ()Ljava/util/function/BinaryOperator; (Ljava/lang/Object;Ljava/lang/Object;)Ljava/lang/Object; REF_invokeStatic java/util/stream/Collectors lambda$toSet$7 (Ljava/util/HashSet;Ljava/util/HashSet;)Ljava/util/HashSet; (Ljava/util/HashSet;Ljava/util/HashSet;)Ljava/util/HashSet; +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic LL_L +@lambda-proxy java/util/stream/Collectors apply ()Ljava/util/function/Function; (Ljava/lang/Object;)Ljava/lang/Object; REF_invokeStatic java/util/stream/Collectors lambda$castingIdentity$2 (Ljava/lang/Object;)Ljava/lang/Object; (Ljava/lang/Object;)Ljava/lang/Object; +java/util/stream/ReduceOps +java/util/stream/TerminalOp +java/util/stream/ReduceOps$ReduceOp +java/util/stream/ReduceOps$3 +java/util/stream/ReduceOps$Box +java/util/function/Consumer +java/util/stream/Sink +java/util/stream/TerminalSink +java/util/stream/ReduceOps$AccumulatingSink +java/util/stream/ReduceOps$3ReducingSink +java/util/stream/Sink$ChainedReference +java/util/stream/ReferencePipeline$3$1 +java/util/stream/ReferencePipeline$2$1 +java/util/AbstractList$RandomAccessSpliterator +@lambda-proxy java/lang/module/ModuleFinder$2 apply (Ljava/lang/String;)Ljava/util/function/Function; (Ljava/lang/Object;)Ljava/lang/Object; REF_invokeStatic java/lang/module/ModuleFinder$2 lambda$find$0 (Ljava/lang/String;Ljava/lang/module/ModuleFinder;)Ljava/util/Optional; (Ljava/lang/module/ModuleFinder;)Ljava/util/Optional; +@lambda-proxy java/lang/module/ModuleFinder$2 apply ()Ljava/util/function/Function; (Ljava/lang/Object;)Ljava/lang/Object; REF_invokeVirtual java/util/Optional stream ()Ljava/util/stream/Stream; (Ljava/util/Optional;)Ljava/util/stream/Stream; +java/util/stream/ReferencePipeline$7 +java/util/stream/FindOps +java/util/stream/FindOps$FindSink +java/util/stream/FindOps$FindSink$OfRef +java/util/stream/FindOps$FindOp +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial LL_I +@lambda-proxy java/util/stream/FindOps$FindSink$OfRef test ()Ljava/util/function/Predicate; (Ljava/lang/Object;)Z REF_invokeVirtual java/util/Optional isPresent ()Z (Ljava/util/Optional;)Z +@lambda-proxy java/util/stream/FindOps$FindSink$OfRef get ()Ljava/util/function/Supplier; ()Ljava/lang/Object; REF_newInvokeSpecial java/util/stream/FindOps$FindSink$OfRef ()V ()Ljava/util/stream/TerminalSink; +@lambda-proxy java/util/stream/FindOps$FindSink$OfRef test ()Ljava/util/function/Predicate; (Ljava/lang/Object;)Z REF_invokeVirtual java/util/Optional isPresent ()Z (Ljava/util/Optional;)Z +@lambda-proxy java/util/stream/FindOps$FindSink$OfRef get ()Ljava/util/function/Supplier; ()Ljava/lang/Object; REF_newInvokeSpecial java/util/stream/FindOps$FindSink$OfRef ()V ()Ljava/util/stream/TerminalSink; +java/util/stream/ReferencePipeline$7$1 +java/util/stream/Streams$AbstractStreamBuilderImpl +java/util/stream/Stream$Builder +java/util/stream/Streams$StreamBuilderImpl +java/util/stream/Streams +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial L4_V +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder newInvokeSpecial L3_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial L4_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.Invokers$Holder linkToTargetMethod L3_L +@lambda-proxy java/lang/module/ModuleFinder$2 accept (Ljava/lang/module/ModuleFinder$2;Ljava/lang/String;)Ljava/util/function/Consumer; (Ljava/lang/Object;)V REF_invokeVirtual java/lang/module/ModuleFinder$2 lambda$find$1 (Ljava/lang/String;Ljava/lang/module/ModuleReference;)V (Ljava/lang/module/ModuleReference;)V +@lambda-proxy jdk/internal/module/DefaultRoots test ()Ljava/util/function/Predicate; (Ljava/lang/Object;)Z REF_invokeStatic jdk/internal/module/DefaultRoots lambda$exportsAPI$2 (Ljava/lang/module/ModuleDescriptor$Exports;)Z (Ljava/lang/module/ModuleDescriptor$Exports;)Z +java/util/HashMap$KeySet +java/util/HashMap$KeyIterator +java/lang/module/Configuration +java/lang/module/Resolver +java/lang/module/ModuleFinder$1 +java/util/ListIterator +java/util/ImmutableCollections$ListItr +java/util/HashMap$Values +java/util/HashMap$ValueIterator +@lambda-proxy java/lang/module/ModuleFinder$2 apply ()Ljava/util/function/Function; (Ljava/lang/Object;)Ljava/lang/Object; REF_invokeStatic java/lang/module/ModuleFinder$2 lambda$findAll$2 (Ljava/lang/module/ModuleFinder;)Ljava/util/stream/Stream; (Ljava/lang/module/ModuleFinder;)Ljava/util/stream/Stream; +@lambda-proxy java/lang/module/ModuleFinder$2 accept (Ljava/lang/module/ModuleFinder$2;Ljava/util/Set;)Ljava/util/function/Consumer; (Ljava/lang/Object;)V REF_invokeVirtual java/lang/module/ModuleFinder$2 lambda$findAll$3 (Ljava/util/Set;Ljava/lang/module/ModuleReference;)V (Ljava/lang/module/ModuleReference;)V +java/util/stream/ForEachOps +java/util/stream/ForEachOps$ForEachOp +java/util/stream/ForEachOps$ForEachOp$OfRef +java/nio/file/attribute/BasicFileAttributes +java/nio/file/CopyOption +java/nio/file/LinkOption +java/nio/file/Files +java/nio/file/attribute/AttributeView +java/nio/file/attribute/FileAttributeView +java/nio/file/attribute/BasicFileAttributeView +sun/nio/fs/Util +sun/nio/fs/WindowsFileAttributeViews +sun/nio/fs/DynamicFileAttributeView +sun/nio/fs/AbstractBasicFileAttributeView +sun/nio/fs/WindowsFileAttributeViews$Basic +java/nio/file/attribute/DosFileAttributes +sun/nio/fs/WindowsFileAttributes +sun/nio/fs/NativeBuffers +jdk/internal/misc/TerminatingThreadLocal +sun/nio/fs/NativeBuffers$1 +jdk/internal/misc/TerminatingThreadLocal$1 +java/lang/ThreadLocal$ThreadLocalMap +java/lang/ThreadLocal$ThreadLocalMap$Entry +java/util/IdentityHashMap +java/util/IdentityHashMap$KeySet +sun/nio/fs/NativeBuffer +sun/nio/fs/NativeBuffer$Deallocator +sun/nio/fs/WindowsNativeDispatcher +jdk/internal/loader/NativeLibraries$LibraryPaths +jdk/internal/loader/NativeLibraries$1 +java/util/ArrayDeque$DeqIterator +jdk/internal/loader/NativeLibrary +jdk/internal/loader/NativeLibraries$NativeLibraryImpl +java/util/concurrent/ConcurrentHashMap$CollectionView +java/util/concurrent/ConcurrentHashMap$ValuesView +java/util/concurrent/ConcurrentHashMap$Traverser +java/util/concurrent/ConcurrentHashMap$BaseIterator +java/util/Enumeration +java/util/concurrent/ConcurrentHashMap$ValueIterator +sun/nio/fs/WindowsNativeDispatcher$FirstFile +sun/nio/fs/WindowsNativeDispatcher$FirstStream +sun/nio/fs/WindowsNativeDispatcher$VolumeInformation +sun/nio/fs/WindowsNativeDispatcher$DiskFreeSpace +sun/nio/fs/WindowsNativeDispatcher$Account +sun/nio/fs/WindowsNativeDispatcher$AclInformation +sun/nio/fs/WindowsNativeDispatcher$CompletionStatus +java/util/zip/ZipFile$CleanableResource +java/util/zip/ZipCoder +java/util/zip/ZipCoder$UTF8ZipCoder +java/util/zip/ZipFile$Source +java/util/zip/ZipFile$Source$Key +java/io/DataOutput +java/io/DataInput +java/io/RandomAccessFile +jdk/internal/access/JavaIORandomAccessFileAccess +java/io/RandomAccessFile$2 +java/io/FileCleanable +java/util/zip/ZipFile$Source$End +java/util/zip/ZipUtils +java/util/concurrent/TimeUnit +java/nio/file/attribute/FileTime +java/util/Locale +sun/util/locale/BaseLocale +sun/util/locale/LocaleUtils +jdk/internal/perf/PerfCounter$CoreCounters +java/util/zip/ZipEntry +java/util/jar/JarEntry +java/util/jar/JarFile$JarFileEntry +java/util/zip/ZipFile$ZipFileInputStream +java/util/zip/InflaterInputStream +java/util/zip/ZipFile$ZipFileInflaterInputStream +java/util/zip/Inflater +java/util/zip/Inflater$InflaterZStreamRef +java/util/zip/ZipFile$InflaterCleanupAction +sun/security/util/SignatureFileVerifier +sun/security/util/Debug +sun/security/action/GetIntegerAction +java/util/jar/JarVerifier +java/security/CodeSigner +java/io/ByteArrayOutputStream +java/util/jar/Attributes +java/util/LinkedHashMap +java/util/jar/Manifest$FastInputStream +jdk/internal/module/ModulePath$Patterns +java/util/regex/Pattern +java/util/regex/Pattern$Node +java/util/regex/Pattern$LastNode +java/util/regex/Pattern$GroupHead +java/util/regex/Pattern$CharPredicate +java/util/regex/Pattern$BmpCharPredicate +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic LII_I +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder newInvokeSpecial LI_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial LLI_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.Invokers$Holder linkToTargetMethod IL_L +@lambda-proxy java/util/regex/Pattern is (I)Ljava/util/regex/Pattern$BmpCharPredicate; (I)Z REF_invokeStatic java/util/regex/Pattern lambda$Single$7 (II)Z (I)Z +java/util/regex/Pattern$CharProperty +java/util/regex/Pattern$BmpCharProperty +java/util/regex/Pattern$GroupTail +java/util/regex/CharPredicates +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic LI_I +@lambda-proxy java/util/regex/CharPredicates is ()Ljava/util/regex/Pattern$BmpCharPredicate; (I)Z REF_invokeStatic java/util/regex/CharPredicates lambda$ASCII_DIGIT$18 (I)Z (I)Z +java/util/regex/Pattern$Qtype +java/util/regex/Pattern$CharPropertyGreedy +java/util/regex/Pattern$BmpCharPropertyGreedy +java/util/regex/Pattern$Dollar +java/util/regex/Pattern$BranchConn +java/util/regex/Pattern$Branch +java/util/regex/Pattern$SliceNode +java/util/regex/Pattern$Slice +java/util/regex/Pattern$Begin +java/util/regex/Pattern$First +java/util/regex/Pattern$Start +java/util/regex/Pattern$TreeInfo +java/util/regex/Pattern$BitClass +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic LI3_I +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder newInvokeSpecial LII_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial LLII_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.Invokers$Holder linkToTargetMethod IIL_L +@lambda-proxy java/util/regex/Pattern is (II)Ljava/util/regex/Pattern$BmpCharPredicate; (I)Z REF_invokeStatic java/util/regex/Pattern lambda$Range$10 (III)Z (I)Z +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecialIFC L3I_I +@lambda-proxy java/util/regex/Pattern$BmpCharPredicate is (Ljava/util/regex/Pattern$BmpCharPredicate;Ljava/util/regex/Pattern$CharPredicate;)Ljava/util/regex/Pattern$BmpCharPredicate; (I)Z REF_invokeInterface java/util/regex/Pattern$BmpCharPredicate lambda$union$2 (Ljava/util/regex/Pattern$CharPredicate;I)Z (I)Z +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecialIFC LLI_I +@lambda-proxy java/util/regex/Pattern$CharPredicate is (Ljava/util/regex/Pattern$CharPredicate;)Ljava/util/regex/Pattern$CharPredicate; (I)Z REF_invokeInterface java/util/regex/Pattern$CharPredicate lambda$negate$3 (I)Z (I)Z +java/util/regex/Pattern$StartS +java/util/regex/Pattern$BackRef +java/util/regex/Pattern$Curly +java/util/regex/Pattern$Ques +java/util/regex/Pattern$GroupCurly +java/util/regex/MatchResult +java/util/regex/Matcher +java/util/regex/IntHashSet +java/lang/module/ModuleDescriptor$Builder +jdk/internal/module/Checks +java/util/Spliterators$AbstractSpliterator +java/util/zip/ZipFile$EntrySpliterator +java/util/function/IntFunction +@lambda-proxy java/util/zip/ZipFile apply (Ljava/util/zip/ZipFile;)Ljava/util/function/IntFunction; (I)Ljava/lang/Object; REF_invokeVirtual java/util/zip/ZipFile lambda$jarStream$1 (I)Ljava/util/jar/JarEntry; (I)Ljava/util/jar/JarEntry; +@lambda-proxy jdk/internal/module/ModulePath test ()Ljava/util/function/Predicate; (Ljava/lang/Object;)Z REF_invokeStatic jdk/internal/module/ModulePath lambda$deriveModuleDescriptor$2 (Ljava/util/jar/JarEntry;)Z (Ljava/util/jar/JarEntry;)Z +@lambda-proxy jdk/internal/module/ModulePath apply ()Ljava/util/function/Function; (Ljava/lang/Object;)Ljava/lang/Object; REF_invokeVirtual java/util/zip/ZipEntry getName ()Ljava/lang/String; (Ljava/util/jar/JarEntry;)Ljava/lang/String; +@lambda-proxy jdk/internal/module/ModulePath test ()Ljava/util/function/Predicate; (Ljava/lang/Object;)Z REF_invokeStatic jdk/internal/module/ModulePath lambda$deriveModuleDescriptor$3 (Ljava/lang/String;)Z (Ljava/lang/String;)Z +@lambda-proxy jdk/internal/module/ModulePath test ()Ljava/util/function/Predicate; (Ljava/lang/Object;)Z REF_invokeStatic jdk/internal/module/ModulePath lambda$deriveModuleDescriptor$4 (Ljava/lang/String;)Z (Ljava/lang/String;)Z +java/util/stream/Collectors$Partition +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic L5_V +@lambda-proxy java/util/stream/Collectors accept (Ljava/util/function/BiConsumer;Ljava/util/function/Predicate;)Ljava/util/function/BiConsumer; (Ljava/lang/Object;Ljava/lang/Object;)V REF_invokeStatic java/util/stream/Collectors lambda$partitioningBy$62 (Ljava/util/function/BiConsumer;Ljava/util/function/Predicate;Ljava/util/stream/Collectors$Partition;Ljava/lang/Object;)V (Ljava/util/stream/Collectors$Partition;Ljava/lang/Object;)V +@lambda-proxy java/util/stream/Collectors apply (Ljava/util/function/BinaryOperator;)Ljava/util/function/BinaryOperator; (Ljava/lang/Object;Ljava/lang/Object;)Ljava/lang/Object; REF_invokeStatic java/util/stream/Collectors lambda$partitioningBy$63 (Ljava/util/function/BinaryOperator;Ljava/util/stream/Collectors$Partition;Ljava/util/stream/Collectors$Partition;)Ljava/util/stream/Collectors$Partition; (Ljava/util/stream/Collectors$Partition;Ljava/util/stream/Collectors$Partition;)Ljava/util/stream/Collectors$Partition; +@lambda-proxy java/util/stream/Collectors get (Ljava/util/stream/Collector;)Ljava/util/function/Supplier; ()Ljava/lang/Object; REF_invokeStatic java/util/stream/Collectors lambda$partitioningBy$64 (Ljava/util/stream/Collector;)Ljava/util/stream/Collectors$Partition; ()Ljava/util/stream/Collectors$Partition; +java/util/stream/Collectors$Partition$1 +java/util/AbstractMap$SimpleImmutableEntry +java/util/HashMap$HashMapSpliterator +java/util/HashMap$KeySpliterator +@lambda-proxy jdk/internal/module/ModulePath apply (Ljdk/internal/module/ModulePath;)Ljava/util/function/Function; (Ljava/lang/Object;)Ljava/lang/Object; REF_invokeVirtual jdk/internal/module/ModulePath toPackageName (Ljava/lang/String;)Ljava/util/Optional; (Ljava/lang/String;)Ljava/util/Optional; +@lambda-proxy jdk/internal/module/ModulePath apply ()Ljava/util/function/Function; (Ljava/lang/Object;)Ljava/lang/Object; REF_invokeVirtual java/util/Optional stream ()Ljava/util/stream/Stream; (Ljava/util/Optional;)Ljava/util/stream/Stream; +java/util/stream/DistinctOps +java/util/stream/ReferencePipeline$StatefulOp +java/util/stream/DistinctOps$1 +java/util/stream/DistinctOps$1$2 +@lambda-proxy java/lang/module/ModuleDescriptor$Builder accept ()Ljava/util/function/Consumer; (Ljava/lang/Object;)V REF_invokeStatic jdk/internal/module/Checks requirePackageName (Ljava/lang/String;)Ljava/lang/String; (Ljava/lang/String;)V +@lambda-proxy jdk/internal/module/ModulePath apply (Ljdk/internal/module/ModulePath;)Ljava/util/function/Function; (Ljava/lang/Object;)Ljava/lang/Object; REF_invokeVirtual jdk/internal/module/ModulePath toServiceName (Ljava/lang/String;)Ljava/util/Optional; (Ljava/lang/String;)Ljava/util/Optional; +@lambda-proxy jdk/internal/module/ModulePath apply ()Ljava/util/function/Function; (Ljava/lang/Object;)Ljava/lang/Object; REF_invokeVirtual java/util/Optional stream ()Ljava/util/stream/Stream; (Ljava/util/Optional;)Ljava/util/stream/Stream; +jdk/internal/module/ModuleInfo$Attributes +jdk/internal/module/ModuleReferences +sun/nio/fs/WindowsUriSupport +java/net/URI$Parser +java/lang/module/ModuleReader +@lambda-proxy jdk/internal/module/ModuleReferences get (Ljava/nio/file/Path;Ljava/net/URI;)Ljava/util/function/Supplier; ()Ljava/lang/Object; REF_invokeStatic jdk/internal/module/ModuleReferences lambda$newJarModule$0 (Ljava/nio/file/Path;Ljava/net/URI;)Ljava/lang/module/ModuleReader; ()Ljava/lang/module/ModuleReader; +jdk/internal/module/ModuleHashes$HashSupplier +@lambda-proxy jdk/internal/module/ModuleReferences generate (Ljava/util/function/Supplier;)Ljdk/internal/module/ModuleHashes$HashSupplier; (Ljava/lang/String;)[B REF_invokeStatic jdk/internal/module/ModuleReferences lambda$newJarModule$1 (Ljava/util/function/Supplier;Ljava/lang/String;)[B (Ljava/lang/String;)[B +java/io/RandomAccessFile$1 +java/util/ImmutableCollections$Map1 +java/util/HashMap$ValueSpliterator +java/util/Collections$UnmodifiableCollection$1 +java/lang/ModuleLayer +java/util/LinkedHashSet +java/lang/module/ResolvedModule +jdk/internal/module/ModuleLoaderMap +jdk/internal/module/ModuleLoaderMap$Mapper +jdk/internal/module/ModuleLoaderMap$Modules +jdk/internal/loader/AbstractClassLoaderValue$Memoizer +jdk/internal/module/ServicesCatalog$ServiceProvider +java/util/concurrent/CopyOnWriteArrayList +java/lang/ModuleLayer$Controller +jdk/internal/module/ModuleBootstrap$SafeModuleFinder +java/lang/invoke/StringConcatFactory +java/lang/invoke/StringConcatFactory$1 +java/lang/invoke/StringConcatFactory$2 +java/lang/invoke/StringConcatFactory$3 +sun/launcher/LauncherHelper +java/nio/charset/CharsetDecoder +sun/nio/cs/ArrayDecoder +sun/nio/cs/SingleByte$Decoder +sun/net/util/URLUtil +java/security/PrivilegedExceptionAction +jdk/internal/loader/URLClassPath$3 +jdk/internal/loader/URLClassPath$Loader +jdk/internal/loader/URLClassPath$JarLoader +sun/net/www/protocol/jar/Handler +jdk/internal/loader/URLClassPath$JarLoader$1 +jdk/internal/loader/FileURLMapper +java/nio/file/FileSystems$DefaultFileSystemHolder +java/nio/file/FileSystems$DefaultFileSystemHolder$1 +jdk/internal/util/jar/JarIndex +jdk/internal/loader/Resource +jdk/internal/loader/URLClassPath$JarLoader$2 +java/lang/NamedPackage +java/lang/Package +java/lang/Package$VersionInfo +sun/nio/ByteBuffered +java/util/zip/Checksum +java/util/zip/CRC32 +java/util/zip/Checksum$1 +java/security/SecureClassLoader$CodeSourceKey +java/security/SecureClassLoader$1 +java/security/PermissionCollection +sun/security/util/LazyCodeSourcePermissionCollection +java/security/Permissions +java/lang/RuntimePermission +java/security/BasicPermissionCollection +java/security/AllPermission +java/security/UnresolvedPermission +java/security/SecureClassLoader$DebugHolder +java/time/temporal/TemporalAccessor +java/util/logging/Logger +java/util/logging/Handler +java/util/logging/Level +java/util/logging/Level$KnownLevel +@lambda-proxy java/util/logging/Level$KnownLevel apply ()Ljava/util/function/Function; (Ljava/lang/Object;)Ljava/lang/Object; REF_invokeStatic java/util/logging/Level$KnownLevel lambda$add$3 (Ljava/lang/String;)Ljava/util/List; (Ljava/lang/String;)Ljava/util/List; +@lambda-proxy java/util/logging/Level$KnownLevel apply ()Ljava/util/function/Function; (Ljava/lang/Object;)Ljava/lang/Object; REF_invokeStatic java/util/logging/Level$KnownLevel lambda$add$4 (Ljava/lang/Integer;)Ljava/util/List; (Ljava/lang/Integer;)Ljava/util/List; +java/util/logging/Logger$LoggerBundle +java/util/logging/Logger$ConfigurationData +java/util/logging/LogManager +java/util/logging/LogManager$1 +java/util/logging/LogManager$LoggerContext +java/util/logging/LogManager$SystemLoggerContext +java/util/logging/LogManager$LogNode +java/util/concurrent/locks/AbstractQueuedSynchronizer +java/util/concurrent/locks/ReentrantLock$Sync +java/util/concurrent/locks/ReentrantLock$NonfairSync +java/util/Collections$SynchronizedMap +java/util/logging/LogManager$Cleaner +java/lang/ApplicationShutdownHooks +java/lang/ApplicationShutdownHooks$1 +java/lang/Shutdown +java/lang/Shutdown$Lock +java/util/logging/LoggingPermission +sun/util/logging/internal/LoggingProviderImpl$LogManagerAccess +java/util/logging/LogManager$LoggingProviderAccess +sun/security/util/FilePermCompat +sun/security/util/SecurityProperties +java/security/Security +java/security/Security$1 +java/util/Properties$LineReader +java/util/concurrent/ConcurrentHashMap$ForwardingNode +java/io/FileInputStream$1 +java/util/concurrent/ConcurrentHashMap$EntrySetView +java/util/concurrent/ConcurrentHashMap$EntryIterator +java/util/concurrent/ConcurrentHashMap$MapEntry +jdk/internal/access/JavaSecurityPropertiesAccess +java/security/Security$2 +java/io/FilePermission +java/lang/System$LoggerFinder +jdk/internal/logger/DefaultLoggerFinder +sun/util/logging/internal/LoggingProviderImpl +java/util/logging/LogManager$2 +java/util/logging/LogManager$RootLogger +java/nio/file/Paths +java/util/logging/LogManager$LoggerWeakRef +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic L6_L +java/lang/invoke/MethodHandleImpl$AsVarargsCollector +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial L7_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DelegatingMethodHandle$Holder delegate L6_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.Invokers$Holder invokeExact_MT L7_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DelegatingMethodHandle$Holder reinvoke_L L3_L +java/lang/invoke/BoundMethodHandle$Species_LL +@lambda-form-invoker [SPECIES_RESOLVE] java.lang.invoke.BoundMethodHandle$Species_LL +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic L5_L +java/util/logging/LogManager$VisitedLoggers +java/util/logging/LogManager$LoggerContext$1 +java/util/concurrent/ConcurrentHashMap$KeySetView +java/util/Collections$3 +java/util/concurrent/ConcurrentHashMap$KeyIterator +java/util/Properties$EntrySet +java/util/Collections$SynchronizedCollection +java/util/Collections$SynchronizedSet +java/util/Hashtable$Enumerator +@lambda-proxy java/util/logging/Level apply ()Ljava/util/function/Function; (Ljava/lang/Object;)Ljava/lang/Object; REF_invokeVirtual java/util/logging/Level$KnownLevel mirrored ()Ljava/util/Optional; (Ljava/util/logging/Level$KnownLevel;)Ljava/util/Optional; +java/util/ArrayList$ArrayListSpliterator +@lambda-proxy java/util/logging/Level$KnownLevel apply ()Ljava/util/function/Function; (Ljava/lang/Object;)Ljava/lang/Object; REF_invokeVirtual java/util/Optional stream ()Ljava/util/stream/Stream; (Ljava/util/Optional;)Ljava/util/stream/Stream; +java/util/IdentityHashMap$Values +java/lang/System$Logger +sun/util/logging/PlatformLogger$Bridge +sun/util/logging/PlatformLogger$ConfigurableBridge +jdk/internal/logger/BootstrapLogger +jdk/internal/logger/BootstrapLogger$DetectBackend +jdk/internal/logger/BootstrapLogger$DetectBackend$1 +java/util/ServiceLoader +java/util/ServiceLoader$ModuleServicesLookupIterator +java/util/Spliterators$1Adapter +java/util/ServiceLoader$LazyClassPathLookupIterator +java/util/ServiceLoader$2 +java/util/ServiceLoader$3 +jdk/internal/module/Resources +jdk/internal/loader/BuiltinClassLoader$2 +jdk/internal/loader/BuiltinClassLoader$5 +jdk/internal/module/SystemModuleFinders$SystemModuleReader +jdk/internal/module/SystemModuleFinders$SystemImage +jdk/internal/jimage/ImageReaderFactory +jdk/internal/jimage/ImageReaderFactory$1 +jdk/internal/jimage/ImageReader +jdk/internal/jimage/BasicImageReader +jdk/internal/jimage/ImageReader$SharedImageReader +jdk/internal/jimage/BasicImageReader$1 +jdk/internal/jimage/NativeImageBuffer +jdk/internal/jimage/NativeImageBuffer$1 +jdk/internal/jimage/ImageHeader +java/nio/IntBuffer +java/nio/DirectIntBufferU +java/nio/DirectByteBufferR +java/nio/DirectIntBufferRU +jdk/internal/jimage/ImageStrings +jdk/internal/jimage/ImageStringsReader +jdk/internal/jimage/decompressor/Decompressor +java/util/Collections$EmptyIterator +java/util/Collections$EmptyEnumeration +jdk/internal/loader/BuiltinClassLoader$1 +java/lang/CompoundEnumeration +jdk/internal/loader/URLClassPath$1 +java/util/concurrent/CopyOnWriteArrayList$COWIterator +java/util/ServiceLoader$1 +java/util/ServiceLoader$Provider +java/util/ServiceLoader$ProviderImpl +jdk/internal/logger/BootstrapLogger$LoggingBackend +jdk/internal/logger/BootstrapLogger$RedirectedLoggers +jdk/internal/logger/BootstrapLogger$BootstrapExecutors +java/util/logging/LogManager$4 +java/util/logging/Logger$SystemLoggerHelper +java/util/logging/Logger$SystemLoggerHelper$1 +jdk/internal/logger/DefaultLoggerFinder$1 +java/net/InetAddress +jdk/internal/access/JavaNetInetAddressAccess +java/net/InetAddress$1 +java/net/InetAddress$InetAddressHolder +java/util/SortedSet +java/util/NavigableSet +java/util/concurrent/ConcurrentSkipListSet +java/util/SortedMap +java/util/NavigableMap +java/util/concurrent/ConcurrentNavigableMap +java/util/concurrent/ConcurrentSkipListMap +java/util/concurrent/ConcurrentSkipListMap$Index +java/lang/invoke/VarHandles +java/lang/ClassValue +java/lang/invoke/VarHandles$1 +java/lang/ClassValue$Entry +java/lang/ClassValue$Identity +java/lang/ClassValue$Version +java/lang/invoke/VarHandleReferences$FieldInstanceReadOnly +java/lang/invoke/VarHandleReferences$FieldInstanceReadWrite +java/lang/invoke/VarHandle$1 +jdk/internal/util/Preconditions$1 +java/lang/invoke/VarHandleGuards +java/lang/invoke/VarForm +java/util/concurrent/atomic/Striped64 +java/util/concurrent/atomic/LongAdder +java/util/concurrent/ConcurrentSkipListMap$Node +java/net/InetAddressImplFactory +java/net/InetAddressImpl +java/net/Inet6AddressImpl +java/net/InetAddress$NameService +java/net/InetAddress$PlatformNameService +java/net/Inet4Address +java/net/NetworkInterface +java/net/InterfaceAddress +java/net/Inet6Address +java/net/Inet6Address$Inet6AddressHolder +java/net/DefaultInterface +java/util/Spliterators$ArraySpliterator +java/util/StringJoiner +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder newInvokeSpecial L4_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial L5_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.Invokers$Holder linkToTargetMethod L4_L +@lambda-proxy java/util/stream/Collectors get (Ljava/lang/CharSequence;Ljava/lang/CharSequence;Ljava/lang/CharSequence;)Ljava/util/function/Supplier; ()Ljava/lang/Object; REF_invokeStatic java/util/stream/Collectors lambda$joining$11 (Ljava/lang/CharSequence;Ljava/lang/CharSequence;Ljava/lang/CharSequence;)Ljava/util/StringJoiner; ()Ljava/util/StringJoiner; +@lambda-proxy java/util/stream/Collectors accept ()Ljava/util/function/BiConsumer; (Ljava/lang/Object;Ljava/lang/Object;)V REF_invokeVirtual java/util/StringJoiner add (Ljava/lang/CharSequence;)Ljava/util/StringJoiner; (Ljava/util/StringJoiner;Ljava/lang/CharSequence;)V +@lambda-proxy java/util/stream/Collectors apply ()Ljava/util/function/BinaryOperator; (Ljava/lang/Object;Ljava/lang/Object;)Ljava/lang/Object; REF_invokeVirtual java/util/StringJoiner merge (Ljava/util/StringJoiner;)Ljava/util/StringJoiner; (Ljava/util/StringJoiner;Ljava/util/StringJoiner;)Ljava/util/StringJoiner; +@lambda-proxy java/util/stream/Collectors apply ()Ljava/util/function/Function; (Ljava/lang/Object;)Ljava/lang/Object; REF_invokeVirtual java/util/StringJoiner toString ()Ljava/lang/String; (Ljava/util/StringJoiner;)Ljava/lang/String; +java/util/concurrent/Future +java/util/concurrent/ForkJoinTask +java/util/concurrent/CountedCompleter +java/util/stream/AbstractTask +java/util/stream/ReduceOps$ReduceTask +java/lang/invoke/VarHandleInts$FieldInstanceReadOnly +java/lang/invoke/VarHandleInts$FieldInstanceReadWrite +java/util/concurrent/ForkJoinTask$Aux +java/util/concurrent/Executor +java/util/concurrent/ExecutorService +java/util/concurrent/AbstractExecutorService +java/util/concurrent/ForkJoinPool +java/lang/invoke/VarHandleLongs$FieldInstanceReadOnly +java/lang/invoke/VarHandleLongs$FieldInstanceReadWrite +java/lang/invoke/VarHandleInts$FieldStaticReadOnly +java/lang/invoke/VarHandleInts$FieldStaticReadWrite +java/util/concurrent/ForkJoinPool$ForkJoinWorkerThreadFactory +java/util/concurrent/ForkJoinPool$DefaultForkJoinWorkerThreadFactory +java/util/concurrent/ForkJoinPool$1 +java/util/concurrent/ForkJoinPool$DefaultCommonPoolForkJoinWorkerThreadFactory +java/util/concurrent/ForkJoinPool$WorkQueue +java/util/concurrent/ForkJoinWorkerThread +java/util/random/RandomGenerator +java/util/Random +java/util/concurrent/ThreadLocalRandom +jdk/internal/util/random/RandomSupport +java/lang/invoke/VarHandleReferences$Array +java/lang/invoke/VarHandle$AccessDescriptor +java/util/concurrent/ForkJoinPool$DefaultCommonPoolForkJoinWorkerThreadFactory$1 +java/util/regex/ASCII +@lambda-proxy java/util/regex/CharPredicates is ()Ljava/util/regex/Pattern$BmpCharPredicate; (I)Z REF_invokeStatic java/util/regex/CharPredicates lambda$ASCII_SPACE$20 (I)Z (I)Z +java/util/ArrayList$SubList +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeVirtual L3_V +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic LLJ_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial L3J_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DelegatingMethodHandle$Holder reinvoke_L LLJ_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic LJL3_J +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial LLJL3_J +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DelegatingMethodHandle$Holder reinvoke_L LJL3_J +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial LLJLL_J +java/lang/invoke/BoundMethodHandle$Species_LLL +@lambda-form-invoker [SPECIES_RESOLVE] java.lang.invoke.BoundMethodHandle$Species_LLL +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic LJ_L +java/lang/invoke/BoundMethodHandle$Species_LLLL +@lambda-form-invoker [SPECIES_RESOLVE] java.lang.invoke.BoundMethodHandle$Species_LLLL +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial LLJ_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic LJL_J +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial LLJL_J +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DelegatingMethodHandle$Holder reinvoke_L LJL_J +java/lang/invoke/BoundMethodHandle$Species_LLLLL +@lambda-form-invoker [SPECIES_RESOLVE] java.lang.invoke.BoundMethodHandle$Species_LLLLL +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic L8_L +java/lang/Long$LongCache +java/lang/invoke/MethodHandles$1 +java/lang/invoke/BoundMethodHandle$Species_LJ +@lambda-form-invoker [SPECIES_RESOLVE] java.lang.invoke.BoundMethodHandle$Species_LJ +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic L4J_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder getLong LL_J +java/lang/invoke/BoundMethodHandle$Species_LLLLLL +@lambda-form-invoker [SPECIES_RESOLVE] java.lang.invoke.BoundMethodHandle$Species_LLLLLL +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic L9_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial L3_J +java/lang/invoke/BoundMethodHandle$Species_LLLLLLL +@lambda-form-invoker [SPECIES_RESOLVE] java.lang.invoke.BoundMethodHandle$Species_LLLLLLL +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic L10_L +java/util/TreeMap +java/lang/invoke/LambdaFormEditor$1 +java/util/TreeMap$Entry +java/util/TreeMap$EntrySet +java/util/TreeMap$PrivateEntryIterator +java/util/TreeMap$EntryIterator +java/lang/invoke/BoundMethodHandle$Species_LLLLLLLL +@lambda-form-invoker [SPECIES_RESOLVE] java.lang.invoke.BoundMethodHandle$Species_LLLLLLLL +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic L11_L +java/lang/invoke/BoundMethodHandle$Species_LLLLLLLLL +@lambda-form-invoker [SPECIES_RESOLVE] java.lang.invoke.BoundMethodHandle$Species_LLLLLLLLL +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic L12_L +java/lang/invoke/BoundMethodHandle$Species_LLLLLLLLLL +@lambda-form-invoker [SPECIES_RESOLVE] java.lang.invoke.BoundMethodHandle$Species_LLLLLLLLLL +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic L13_L +java/lang/invoke/BoundMethodHandle$Species_LLLLLLLLLLL +@lambda-form-invoker [SPECIES_RESOLVE] java.lang.invoke.BoundMethodHandle$Species_LLLLLLLLLLL +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic L14_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial L6_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.Invokers$Holder linkToTargetMethod L5_L +java/lang/invoke/BoundMethodHandle$Species_LLLLLLLLLLLL +@lambda-form-invoker [SPECIES_RESOLVE] java.lang.invoke.BoundMethodHandle$Species_LLLLLLLLLLLL +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic L15_L +java/lang/invoke/BoundMethodHandle$Species_LLLLLLLLLLLLL +@lambda-form-invoker [SPECIES_RESOLVE] java.lang.invoke.BoundMethodHandle$Species_LLLLLLLLLLLLL +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic L16_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.Invokers$Holder linkToTargetMethod L6_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic LJLIL_J +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial LLJLIL_J +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DelegatingMethodHandle$Holder reinvoke_L LJLIL_J +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial LLJLI_J +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic LJI_J +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial LLJI_J +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DelegatingMethodHandle$Holder reinvoke_L LJI_J +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial LLI_J +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial L3I_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.Invokers$Holder linkToTargetMethod LIL_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial LLIL_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.Invokers$Holder linkToTargetMethod ILL_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic LJLJL_J +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial LLJLJL_J +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DelegatingMethodHandle$Holder reinvoke_L LJLJL_J +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial LLJLJ_J +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic LJJ_J +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial LLJJ_J +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DelegatingMethodHandle$Holder reinvoke_L LJJ_J +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial LLJ_J +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.Invokers$Holder linkToTargetMethod JL_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial LLJJ_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.Invokers$Holder linkToTargetMethod JJL_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic LD_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial LLD_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.Invokers$Holder linkToTargetMethod DL_L +jdk/internal/math/FloatingDecimal +jdk/internal/math/FloatingDecimal$BinaryToASCIIConverter +jdk/internal/math/FloatingDecimal$ExceptionalBinaryToASCIIBuffer +jdk/internal/math/FloatingDecimal$BinaryToASCIIBuffer +jdk/internal/math/FloatingDecimal$1 +jdk/internal/math/FloatingDecimal$ASCIIToBinaryConverter +jdk/internal/math/FloatingDecimal$PreparedASCIIToBinaryBuffer +java/time/format/DateTimeFormatter +java/time/format/DateTimeFormatterBuilder +java/time/temporal/TemporalQuery +java/time/ZoneId +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStaticInit LL_L +@lambda-proxy java/time/format/DateTimeFormatterBuilder queryFrom ()Ljava/time/temporal/TemporalQuery; (Ljava/time/temporal/TemporalAccessor;)Ljava/lang/Object; REF_invokeStatic java/time/format/DateTimeFormatterBuilder lambda$static$0 (Ljava/time/temporal/TemporalAccessor;)Ljava/time/ZoneId; (Ljava/time/temporal/TemporalAccessor;)Ljava/time/ZoneId; +java/lang/Character$CharacterCache +java/time/temporal/TemporalField +java/time/temporal/ChronoField +java/time/temporal/TemporalUnit +java/time/temporal/ChronoUnit +java/time/temporal/TemporalAmount +java/time/Duration +java/math/BigInteger +java/time/temporal/ValueRange +java/time/temporal/IsoFields +java/time/temporal/IsoFields$Field +java/time/temporal/IsoFields$Field$1 +java/time/temporal/IsoFields$Field$2 +java/time/temporal/IsoFields$Field$3 +java/time/temporal/IsoFields$Field$4 +java/time/temporal/IsoFields$Unit +java/time/temporal/JulianFields +java/time/temporal/JulianFields$Field +java/time/format/SignStyle +java/time/format/DateTimeFormatterBuilder$DateTimePrinterParser +java/time/format/DateTimeFormatterBuilder$NumberPrinterParser +java/time/format/DateTimeFormatterBuilder$CharLiteralPrinterParser +java/time/format/ResolverStyle +java/time/chrono/Chronology +java/time/chrono/AbstractChronology +java/time/chrono/IsoChronology +java/util/Locale$Category +java/time/format/DateTimeFormatterBuilder$CompositePrinterParser +java/time/format/DecimalStyle +java/time/format/DateTimeFormatterBuilder$SettingsParser +java/time/format/DateTimeFormatterBuilder$OffsetIdPrinterParser +java/time/format/DateTimeFormatterBuilder$FractionPrinterParser +java/time/format/DateTimeFormatterBuilder$ZoneIdPrinterParser +java/time/format/DateTimeFormatterBuilder$StringLiteralPrinterParser +java/time/format/DateTimeFormatterBuilder$InstantPrinterParser +java/time/format/TextStyle +java/util/Collections$SingletonMap +java/time/format/DateTimeTextProvider$LocaleStore +java/util/Collections$SingletonSet +java/util/Collections$1 +java/util/LinkedHashMap$LinkedEntrySet +java/util/LinkedHashMap$LinkedHashIterator +java/util/LinkedHashMap$LinkedEntryIterator +java/time/format/DateTimeTextProvider +java/time/format/DateTimeTextProvider$1 +java/util/Arrays$LegacyMergeSort +java/util/TimSort +java/time/format/DateTimeFormatterBuilder$1 +java/time/format/DateTimeFormatterBuilder$TextPrinterParser +java/time/chrono/ChronoPeriod +java/time/Period +@lambda-proxy java/time/format/DateTimeFormatter queryFrom ()Ljava/time/temporal/TemporalQuery; (Ljava/time/temporal/TemporalAccessor;)Ljava/lang/Object; REF_invokeStatic java/time/format/DateTimeFormatter lambda$static$0 (Ljava/time/temporal/TemporalAccessor;)Ljava/time/Period; (Ljava/time/temporal/TemporalAccessor;)Ljava/time/Period; +@lambda-proxy java/time/format/DateTimeFormatter queryFrom ()Ljava/time/temporal/TemporalQuery; (Ljava/time/temporal/TemporalAccessor;)Ljava/lang/Object; REF_invokeStatic java/time/format/DateTimeFormatter lambda$static$1 (Ljava/time/temporal/TemporalAccessor;)Ljava/lang/Boolean; (Ljava/time/temporal/TemporalAccessor;)Ljava/lang/Boolean; +java/time/temporal/TemporalAdjuster +java/time/ZoneOffset +java/time/ZoneRegion +java/time/zone/ZoneRules +java/time/zone/ZoneOffsetTransitionRule +java/time/temporal/Temporal +java/time/chrono/ChronoLocalDateTime +java/time/LocalDateTime +java/time/chrono/ChronoLocalDate +java/time/LocalDate +java/time/LocalTime +java/time/InstantSource +java/time/Clock +java/time/Clock$SystemClock +java/time/Instant +java/time/format/DateTimePrintContext +java/time/temporal/TemporalQueries +java/time/temporal/TemporalQueries$1 +java/time/temporal/TemporalQueries$2 +java/time/temporal/TemporalQueries$3 +java/time/temporal/TemporalQueries$4 +java/time/temporal/TemporalQueries$5 +java/time/temporal/TemporalQueries$6 +java/time/temporal/TemporalQueries$7 +java/time/LocalDate$1 +java/time/format/DateTimeFormatterBuilder$2 +java/time/LocalTime$1 +java/math/BigDecimal +java/math/RoundingMode +java/text/Format +java/text/DateFormat +java/util/spi/LocaleServiceProvider +java/text/spi/DateFormatProvider +sun/util/locale/provider/LocaleProviderAdapter +sun/util/locale/provider/LocaleProviderAdapter$Type +java/util/Collections$UnmodifiableList +java/util/Collections$UnmodifiableRandomAccessList +sun/util/locale/provider/LocaleProviderAdapter$1 +sun/util/locale/provider/ResourceBundleBasedAdapter +sun/util/locale/provider/JRELocaleProviderAdapter +sun/util/cldr/CLDRLocaleProviderAdapter +sun/util/locale/provider/LocaleDataMetaInfo +sun/util/cldr/CLDRBaseLocaleDataMetaInfo +sun/util/locale/LanguageTag +sun/util/locale/ParseStatus +sun/util/locale/StringTokenIterator +sun/util/locale/InternalLocaleBuilder +sun/util/locale/InternalLocaleBuilder$CaseInsensitiveChar +sun/util/locale/BaseLocale$Key +sun/util/locale/LocaleObjectCache +sun/util/locale/BaseLocale$Cache +sun/util/locale/LocaleObjectCache$CacheEntry +java/util/Locale$Cache +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic L_L +@lambda-proxy sun/util/cldr/CLDRLocaleProviderAdapter run ()Ljava/security/PrivilegedExceptionAction; ()Ljava/lang/Object; REF_invokeStatic sun/util/cldr/CLDRLocaleProviderAdapter lambda$new$0 ()Lsun/util/locale/provider/LocaleDataMetaInfo; ()Lsun/util/locale/provider/LocaleDataMetaInfo; +@lambda-proxy sun/util/locale/provider/JRELocaleProviderAdapter run (Lsun/util/locale/provider/JRELocaleProviderAdapter;)Ljava/security/PrivilegedAction; ()Ljava/lang/Object; REF_invokeVirtual sun/util/locale/provider/JRELocaleProviderAdapter lambda$getDateFormatProvider$2 ()Ljava/text/spi/DateFormatProvider; ()Ljava/text/spi/DateFormatProvider; +sun/util/locale/provider/AvailableLanguageTags +sun/util/locale/provider/DateFormatProviderImpl +java/util/StringTokenizer +sun/util/locale/provider/CalendarDataUtility +java/util/Locale$Builder +java/text/SimpleDateFormat +java/text/AttributedCharacterIterator$Attribute +java/text/Format$Field +java/text/DateFormat$Field +java/util/Calendar +java/util/TimeZone +sun/util/calendar/ZoneInfo +sun/util/calendar/ZoneInfoFile +sun/util/calendar/ZoneInfoFile$1 +java/io/DataInputStream +sun/util/calendar/ZoneInfoFile$ZoneOffsetTransitionRule +sun/util/spi/CalendarProvider +@lambda-proxy sun/util/locale/provider/JRELocaleProviderAdapter run (Lsun/util/locale/provider/JRELocaleProviderAdapter;)Ljava/security/PrivilegedAction; ()Ljava/lang/Object; REF_invokeVirtual sun/util/locale/provider/JRELocaleProviderAdapter lambda$getCalendarProvider$11 ()Lsun/util/spi/CalendarProvider; ()Lsun/util/spi/CalendarProvider; +sun/util/locale/provider/CalendarProviderImpl +java/util/Calendar$Builder +java/util/GregorianCalendar +sun/util/calendar/CalendarSystem +sun/util/calendar/CalendarSystem$GregorianHolder +sun/util/calendar/AbstractCalendar +sun/util/calendar/BaseCalendar +sun/util/calendar/Gregorian +java/util/spi/CalendarDataProvider +sun/util/locale/provider/LocaleServiceProviderPool +java/text/spi/BreakIteratorProvider +java/text/spi/CollatorProvider +java/text/spi/DateFormatSymbolsProvider +java/text/spi/DecimalFormatSymbolsProvider +java/text/spi/NumberFormatProvider +java/util/spi/CurrencyNameProvider +java/util/spi/LocaleNameProvider +java/util/spi/TimeZoneNameProvider +sun/util/locale/provider/LocaleServiceProviderPool$LocalizedObjectGetter +sun/util/locale/provider/CalendarDataUtility$CalendarWeekParameterGetter +java/util/ResourceBundle$Control +java/util/ResourceBundle +java/util/ResourceBundle$Control$CandidateListCache +java/util/ResourceBundle$SingleFormatControl +java/util/ResourceBundle$NoFallbackControl +java/util/AbstractSequentialList +java/util/LinkedList +java/util/LinkedList$Node +@lambda-proxy sun/util/cldr/CLDRLocaleProviderAdapter run (Lsun/util/cldr/CLDRLocaleProviderAdapter;)Ljava/security/PrivilegedAction; ()Ljava/lang/Object; REF_invokeVirtual sun/util/cldr/CLDRLocaleProviderAdapter lambda$getCalendarDataProvider$1 ()Ljava/util/spi/CalendarDataProvider; ()Ljava/util/spi/CalendarDataProvider; +sun/util/locale/provider/CalendarDataProviderImpl +sun/util/cldr/CLDRCalendarDataProviderImpl +sun/util/locale/provider/LocaleResources +sun/util/resources/LocaleData +sun/util/resources/LocaleData$1 +sun/util/resources/Bundles$Strategy +sun/util/resources/LocaleData$LocaleDataStrategy +sun/util/resources/Bundles +sun/util/resources/Bundles$1 +jdk/internal/access/JavaUtilResourceBundleAccess +java/util/ResourceBundle$1 +java/util/ResourceBundle$2 +sun/util/resources/Bundles$CacheKey +java/util/ListResourceBundle +sun/util/resources/cldr/CalendarData +java/util/ResourceBundle$ResourceBundleProviderHelper +@lambda-proxy java/util/ResourceBundle$ResourceBundleProviderHelper run (Ljava/lang/reflect/Constructor;)Ljava/security/PrivilegedAction; ()Ljava/lang/Object; REF_invokeStatic java/util/ResourceBundle$ResourceBundleProviderHelper lambda$newResourceBundle$0 (Ljava/lang/reflect/Constructor;)Ljava/lang/Void; ()Ljava/lang/Void; +sun/util/resources/Bundles$CacheKeyReference +sun/util/resources/Bundles$BundleReference +sun/util/locale/provider/LocaleResources$ResourceReference +sun/util/calendar/CalendarDate +sun/util/calendar/BaseCalendar$Date +sun/util/calendar/Gregorian$Date +sun/util/calendar/CalendarUtils +java/text/DateFormatSymbols +@lambda-proxy sun/util/locale/provider/JRELocaleProviderAdapter run (Lsun/util/locale/provider/JRELocaleProviderAdapter;)Ljava/security/PrivilegedAction; ()Ljava/lang/Object; REF_invokeVirtual sun/util/locale/provider/JRELocaleProviderAdapter lambda$getDateFormatSymbolsProvider$3 ()Ljava/text/spi/DateFormatSymbolsProvider; ()Ljava/text/spi/DateFormatSymbolsProvider; +sun/util/locale/provider/DateFormatSymbolsProviderImpl +sun/text/resources/cldr/FormatData +java/text/NumberFormat +@lambda-proxy sun/util/locale/provider/JRELocaleProviderAdapter run (Lsun/util/locale/provider/JRELocaleProviderAdapter;)Ljava/security/PrivilegedAction; ()Ljava/lang/Object; REF_invokeVirtual sun/util/locale/provider/JRELocaleProviderAdapter lambda$getNumberFormatProvider$5 ()Ljava/text/spi/NumberFormatProvider; ()Ljava/text/spi/NumberFormatProvider; +sun/util/locale/provider/NumberFormatProviderImpl +java/text/DecimalFormatSymbols +@lambda-proxy sun/util/locale/provider/JRELocaleProviderAdapter run (Lsun/util/locale/provider/JRELocaleProviderAdapter;)Ljava/security/PrivilegedAction; ()Ljava/lang/Object; REF_invokeVirtual sun/util/locale/provider/JRELocaleProviderAdapter lambda$getDecimalFormatSymbolsProvider$4 ()Ljava/text/spi/DecimalFormatSymbolsProvider; ()Ljava/text/spi/DecimalFormatSymbolsProvider; +sun/util/locale/provider/DecimalFormatSymbolsProviderImpl +java/lang/StringLatin1$CharsSpliterator +java/util/stream/IntStream +java/util/stream/IntPipeline +java/util/stream/IntPipeline$Head +java/util/function/IntPredicate +@lambda-proxy java/text/DecimalFormatSymbols test ()Ljava/util/function/IntPredicate; (I)Z REF_invokeStatic java/text/DecimalFormatSymbols lambda$findNonFormatChar$0 (I)Z (I)Z +java/util/stream/IntPipeline$StatelessOp +java/util/stream/IntPipeline$10 +java/util/function/IntConsumer +java/util/stream/Sink$OfInt +java/util/stream/FindOps$FindSink$OfInt +java/util/OptionalInt +@lambda-proxy java/util/stream/FindOps$FindSink$OfInt test ()Ljava/util/function/Predicate; (Ljava/lang/Object;)Z REF_invokeVirtual java/util/OptionalInt isPresent ()Z (Ljava/util/OptionalInt;)Z +@lambda-proxy java/util/stream/FindOps$FindSink$OfInt get ()Ljava/util/function/Supplier; ()Ljava/lang/Object; REF_newInvokeSpecial java/util/stream/FindOps$FindSink$OfInt ()V ()Ljava/util/stream/TerminalSink; +@lambda-proxy java/util/stream/FindOps$FindSink$OfInt test ()Ljava/util/function/Predicate; (Ljava/lang/Object;)Z REF_invokeVirtual java/util/OptionalInt isPresent ()Z (Ljava/util/OptionalInt;)Z +@lambda-proxy java/util/stream/FindOps$FindSink$OfInt get ()Ljava/util/function/Supplier; ()Ljava/lang/Object; REF_newInvokeSpecial java/util/stream/FindOps$FindSink$OfInt ()V ()Ljava/util/stream/TerminalSink; +java/util/stream/Sink$ChainedInt +java/util/stream/IntPipeline$10$1 +java/lang/StringUTF16$CharsSpliterator +java/lang/CharacterData00 +java/text/DecimalFormat +java/text/FieldPosition +java/text/DigitList +java/util/Date +java/text/DontCareFieldPosition +java/text/Format$FieldDelegate +java/text/DontCareFieldPosition$1 +java/text/NumberFormat$Field +java/util/Formatter +java/util/Formatter$Conversion +java/util/Formatter$FormatString +java/util/Formatter$FormatSpecifier +java/util/Formatter$Flags +java/util/Formattable +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.LambdaForm$Holder identity_D LD_D +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.LambdaForm$Holder zero_D L_D +java/lang/invoke/BoundMethodHandle$Species_D +@lambda-form-invoker [SPECIES_RESOLVE] java.lang.invoke.BoundMethodHandle$Species_D +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic L3D_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder getDouble LL_D +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.Invokers$Holder invoke_MT LL_L +sun/invoke/util/ValueConversions$WrapperCache +java/lang/invoke/BoundMethodHandle$Species_DL +@lambda-form-invoker [SPECIES_RESOLVE] java.lang.invoke.BoundMethodHandle$Species_DL +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic L3DL_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.LambdaForm$Holder identity_I LI_I +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.LambdaForm$Holder zero_I L_I +java/lang/invoke/BoundMethodHandle$Species_I +@lambda-form-invoker [SPECIES_RESOLVE] java.lang.invoke.BoundMethodHandle$Species_I +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic L3I_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder getInt LL_I +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic LI_L +java/lang/invoke/BoundMethodHandle$Species_IL +@lambda-form-invoker [SPECIES_RESOLVE] java.lang.invoke.BoundMethodHandle$Species_IL +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic L3IL_L +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeStatic L_V +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DirectMethodHandle$Holder invokeSpecial LL_V +@lambda-form-invoker [LF_RESOLVE] java.lang.invoke.DelegatingMethodHandle$Holder reinvoke_L L_V +java/util/IdentityHashMap$IdentityHashMapIterator +java/util/IdentityHashMap$KeyIterator diff --git a/inst/stics/V11.0.0/bin/jre17/lib/fontconfig.bfc b/inst/stics/V11.0.0/bin/jre17/lib/fontconfig.bfc new file mode 100644 index 0000000..8f4eb44 Binary files /dev/null and b/inst/stics/V11.0.0/bin/jre17/lib/fontconfig.bfc differ diff --git a/inst/stics/V11.0.0/bin/jre17/lib/fontconfig.properties.src b/inst/stics/V11.0.0/bin/jre17/lib/fontconfig.properties.src new file mode 100644 index 0000000..5be779b --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/lib/fontconfig.properties.src @@ -0,0 +1,328 @@ +# +# +# Copyright (c) 2003, 2019, Oracle and/or its affiliates. All rights reserved. +# DO NOT ALTER OR REMOVE COPYRIGHT NOTICES OR THIS FILE HEADER. +# +# This code is free software; you can redistribute it and/or modify it +# under the terms of the GNU General Public License version 2 only, as +# published by the Free Software Foundation. Oracle designates this +# particular file as subject to the "Classpath" exception as provided +# by Oracle in the LICENSE file that accompanied this code. +# +# This code is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License +# version 2 for more details (a copy is included in the LICENSE file that +# accompanied this code). +# +# You should have received a copy of the GNU General Public License version +# 2 along with this work; if not, write to the Free Software Foundation, +# Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA. +# +# Please contact Oracle, 500 Oracle Parkway, Redwood Shores, CA 94065 USA +# or visit www.oracle.com if you need additional information or have any +# questions. +# + +# Version + +version=1 + +# Component Font Mappings + +allfonts.chinese-ms936=SimSun +allfonts.chinese-ms936-extb=SimSun-ExtB +allfonts.chinese-gb18030=SimSun-18030 +allfonts.chinese-gb18030-extb=SimSun-ExtB +allfonts.chinese-hkscs=MingLiU_HKSCS +allfonts.chinese-ms950-extb=MingLiU-ExtB +allfonts.devanagari=Mangal +allfonts.bengali=Vrinda +allfonts.gujarati=Shruti +allfonts.gurmukhi=Raavi +allfonts.kannada=Tunga +allfonts.malayalam=Kartika +allfonts.oriya=Kalinga +allfonts.sinhala=Iskoola Pota +allfonts.tamil=Latha +allfonts.telugu=Gautami +allfonts.khmer=Khmer UI +allfonts.mongolian=Mongolian Baiti +allfonts.myanmar=Myanmar Text +allfonts.dingbats=Wingdings +allfonts.symbol=Symbol +allfonts.symbols=Segoe UI Symbol +allfonts.thai=DokChampa +allfonts.georgian=Sylfaen + +serif.plain.alphabetic=Times New Roman +serif.plain.chinese-ms950=MingLiU +serif.plain.chinese-ms950-extb=MingLiU-ExtB +serif.plain.hebrew=David +serif.plain.japanese=MS Mincho +serif.plain.korean=Batang + +serif.bold.alphabetic=Times New Roman Bold +serif.bold.chinese-ms950=PMingLiU +serif.bold.chinese-ms950-extb=PMingLiU-ExtB +serif.bold.hebrew=David Bold +serif.bold.japanese=MS Mincho +serif.bold.korean=Batang + +serif.italic.alphabetic=Times New Roman Italic +serif.italic.chinese-ms950=PMingLiU +serif.italic.chinese-ms950-extb=PMingLiU-ExtB +serif.italic.hebrew=David +serif.italic.japanese=MS Mincho +serif.italic.korean=Batang + +serif.bolditalic.alphabetic=Times New Roman Bold Italic +serif.bolditalic.chinese-ms950=PMingLiU +serif.bolditalic.chinese-ms950-extb=PMingLiU-ExtB +serif.bolditalic.hebrew=David Bold +serif.bolditalic.japanese=MS Mincho +serif.bolditalic.korean=Batang + +sansserif.plain.alphabetic=Arial +sansserif.plain.chinese-ms950=MingLiU +sansserif.plain.chinese-ms950-extb=MingLiU-ExtB +sansserif.plain.hebrew=David +sansserif.plain.japanese=MS Gothic +sansserif.plain.korean=Gulim + +sansserif.bold.alphabetic=Arial Bold +sansserif.bold.chinese-ms950=PMingLiU +sansserif.bold.chinese-ms950-extb=PMingLiU-ExtB +sansserif.bold.hebrew=David Bold +sansserif.bold.japanese=MS Gothic +sansserif.bold.korean=Gulim + +sansserif.italic.alphabetic=Arial Italic +sansserif.italic.chinese-ms950=PMingLiU +sansserif.italic.chinese-ms950-extb=PMingLiU-ExtB +sansserif.italic.hebrew=David +sansserif.italic.japanese=MS Gothic +sansserif.italic.korean=Gulim + +sansserif.bolditalic.alphabetic=Arial Bold Italic +sansserif.bolditalic.chinese-ms950=PMingLiU +sansserif.bolditalic.chinese-ms950-extb=PMingLiU-ExtB +sansserif.bolditalic.hebrew=David Bold +sansserif.bolditalic.japanese=MS Gothic +sansserif.bolditalic.korean=Gulim + +monospaced.plain.alphabetic=Courier New +monospaced.plain.chinese-ms950=MingLiU +monospaced.plain.chinese-ms950-extb=MingLiU-ExtB +monospaced.plain.hebrew=Courier New +monospaced.plain.japanese=MS Gothic +monospaced.plain.korean=GulimChe + +monospaced.bold.alphabetic=Courier New Bold +monospaced.bold.chinese-ms950=PMingLiU +monospaced.bold.chinese-ms950-extb=PMingLiU-ExtB +monospaced.bold.hebrew=Courier New Bold +monospaced.bold.japanese=MS Gothic +monospaced.bold.korean=GulimChe + +monospaced.italic.alphabetic=Courier New Italic +monospaced.italic.chinese-ms950=PMingLiU +monospaced.italic.chinese-ms950-extb=PMingLiU-ExtB +monospaced.italic.hebrew=Courier New +monospaced.italic.japanese=MS Gothic +monospaced.italic.korean=GulimChe + +monospaced.bolditalic.alphabetic=Courier New Bold Italic +monospaced.bolditalic.chinese-ms950=PMingLiU +monospaced.bolditalic.chinese-ms950-extb=PMingLiU-ExtB +monospaced.bolditalic.hebrew=Courier New Bold +monospaced.bolditalic.japanese=MS Gothic +monospaced.bolditalic.korean=GulimChe + +dialog.plain.alphabetic=Arial +dialog.plain.chinese-ms950=MingLiU +dialog.plain.chinese-ms950-extb=MingLiU-ExtB +dialog.plain.hebrew=David +dialog.plain.japanese=MS Gothic +dialog.plain.korean=Gulim + +dialog.bold.alphabetic=Arial Bold +dialog.bold.chinese-ms950=PMingLiU +dialog.bold.chinese-ms950-extb=PMingLiU-ExtB +dialog.bold.hebrew=David Bold +dialog.bold.japanese=MS Gothic +dialog.bold.korean=Gulim + +dialog.italic.alphabetic=Arial Italic +dialog.italic.chinese-ms950=PMingLiU +dialog.italic.chinese-ms950-extb=PMingLiU-ExtB +dialog.italic.hebrew=David +dialog.italic.japanese=MS Gothic +dialog.italic.korean=Gulim + +dialog.bolditalic.alphabetic=Arial Bold Italic +dialog.bolditalic.chinese-ms950=PMingLiU +dialog.bolditalic.chinese-ms950-extb=PMingLiU-ExtB +dialog.bolditalic.hebrew=David Bold +dialog.bolditalic.japanese=MS Gothic +dialog.bolditalic.korean=Gulim + +dialoginput.plain.alphabetic=Courier New +dialoginput.plain.chinese-ms950=MingLiU +dialoginput.plain.chinese-ms950-extb=MingLiU-ExtB +dialoginput.plain.hebrew=David +dialoginput.plain.japanese=MS Gothic +dialoginput.plain.korean=Gulim + +dialoginput.bold.alphabetic=Courier New Bold +dialoginput.bold.chinese-ms950=PMingLiU +dialoginput.bold.chinese-ms950-extb=PMingLiU-ExtB +dialoginput.bold.hebrew=David Bold +dialoginput.bold.japanese=MS Gothic +dialoginput.bold.korean=Gulim + +dialoginput.italic.alphabetic=Courier New Italic +dialoginput.italic.chinese-ms950=PMingLiU +dialoginput.italic.chinese-ms950-extb=PMingLiU-ExtB +dialoginput.italic.hebrew=David +dialoginput.italic.japanese=MS Gothic +dialoginput.italic.korean=Gulim + +dialoginput.bolditalic.alphabetic=Courier New Bold Italic +dialoginput.bolditalic.chinese-ms950=PMingLiU +dialoginput.bolditalic.chinese-ms950-extb=PMingLiU-ExtB +dialoginput.bolditalic.hebrew=David Bold +dialoginput.bolditalic.japanese=MS Gothic +dialoginput.bolditalic.korean=Gulim + +# Search Sequences + +sequence.allfonts=alphabetic/default,dingbats,symbol + +sequence.serif.GBK=alphabetic,chinese-ms936,dingbats,symbol,chinese-ms936-extb +sequence.sansserif.GBK=alphabetic,chinese-ms936,dingbats,symbol,chinese-ms936-extb +sequence.monospaced.GBK=chinese-ms936,alphabetic,dingbats,symbol,chinese-ms936-extb +sequence.dialog.GBK=alphabetic,chinese-ms936,dingbats,symbol,chinese-ms936-extb +sequence.dialoginput.GBK=alphabetic,chinese-ms936,dingbats,symbol,chinese-ms936-extb + +sequence.serif.GB18030=alphabetic,chinese-gb18030,dingbats,symbol,chinese-gb18030-extb +sequence.sansserif.GB18030=alphabetic,chinese-gb18030,dingbats,symbol,chinese-gb18030-extb +sequence.monospaced.GB18030=chinese-gb18030,alphabetic,dingbats,symbol,chinese-gb18030-extb +sequence.dialog.GB18030=alphabetic,chinese-gb18030,dingbats,symbol,chinese-gb18030-extb +sequence.dialoginput.GB18030=alphabetic,chinese-gb18030,dingbats,symbol,chinese-gb18030-extb + +sequence.serif.x-windows-950=alphabetic,chinese-ms950,dingbats,symbol,chinese-ms950-extb +sequence.sansserif.x-windows-950=alphabetic,chinese-ms950,dingbats,symbol,chinese-ms950-extb +sequence.monospaced.x-windows-950=chinese-ms950,alphabetic,dingbats,symbol,chinese-ms950-extb +sequence.dialog.x-windows-950=alphabetic,chinese-ms950,dingbats,symbol,chinese-ms950-extb +sequence.dialoginput.x-windows-950=alphabetic,chinese-ms950,dingbats,symbol,chinese-ms950-extb + +sequence.serif.x-MS950-HKSCS=alphabetic,chinese-ms950,chinese-hkscs,dingbats,symbol,chinese-ms950-extb +sequence.sansserif.x-MS950-HKSCS=alphabetic,chinese-ms950,chinese-hkscs,dingbats,symbol,chinese-ms950-extb +sequence.monospaced.x-MS950-HKSCS=chinese-ms950,alphabetic,chinese-hkscs,dingbats,symbol,chinese-ms950-extb +sequence.dialog.x-MS950-HKSCS=alphabetic,chinese-ms950,chinese-hkscs,dingbats,symbol,chinese-ms950-extb +sequence.dialoginput.x-MS950-HKSCS=alphabetic,chinese-ms950,chinese-hkscs,dingbats,symbol,chinese-ms950-extb + +sequence.serif.x-MS950-HKSCS-XP=alphabetic,chinese-ms950,chinese-hkscs,dingbats,symbol,chinese-ms950-extb +sequence.sansserif.x-MS950-HKSCS-XP=alphabetic,chinese-ms950,chinese-hkscs,dingbats,symbol,chinese-ms950-extb +sequence.monospaced.x-MS950-HKSCS-XP=chinese-ms950,alphabetic,chinese-hkscs,dingbats,symbol,chinese-ms950-extb +sequence.dialog.x-MS950-HKSCS-XP=alphabetic,chinese-ms950,chinese-hkscs,dingbats,symbol,chinese-ms950-extb +sequence.dialoginput.x-MS950-HKSCS-XP=alphabetic,chinese-ms950,chinese-hkscs,dingbats,symbol,chinese-ms950-extb + +sequence.allfonts.UTF-8.hi=alphabetic/1252,devanagari,dingbats,symbol +sequence.allfonts.UTF-8.ja=alphabetic,japanese,dingbats,symbol + +sequence.allfonts.windows-1255=hebrew,alphabetic/1252,dingbats,symbol + +sequence.serif.windows-31j=alphabetic,japanese,dingbats,symbol +sequence.sansserif.windows-31j=alphabetic,japanese,dingbats,symbol +sequence.monospaced.windows-31j=japanese,alphabetic,dingbats,symbol +sequence.dialog.windows-31j=alphabetic,japanese,dingbats,symbol +sequence.dialoginput.windows-31j=alphabetic,japanese,dingbats,symbol + +sequence.serif.x-windows-949=alphabetic,korean,dingbats,symbol +sequence.sansserif.x-windows-949=alphabetic,korean,dingbats,symbol +sequence.monospaced.x-windows-949=korean,alphabetic,dingbats,symbol +sequence.dialog.x-windows-949=alphabetic,korean,dingbats,symbol +sequence.dialoginput.x-windows-949=alphabetic,korean,dingbats,symbol + +sequence.allfonts.x-windows-874=alphabetic,thai,dingbats,symbol + +sequence.fallback=symbols,\ + chinese-ms950,chinese-hkscs,chinese-ms936,chinese-gb18030,\ + japanese,korean,chinese-ms950-extb,chinese-ms936-extb,\ + georgian,devanagari,bengali,gujarati,gurmukhi,kannada,\ + malayalam,oriya,sinhala,tamil,telugu,thai,khmer,mongolian,\ + myanmar + +# Exclusion Ranges + +exclusion.alphabetic=0700-1cff,1d80-1e9f,1f00-2017,2020-20ab,20ad-20b8,20bb-20bc,20be-f8ff +exclusion.chinese-gb18030=0390-03d6,2200-22ef,2701-27be +exclusion.hebrew=0041-005a,0060-007a,007f-00ff,20ac-20ac + +# Monospaced to Proportional width variant mapping +# (Experimental private syntax) +proportional.MS_Gothic=MS PGothic +proportional.MS_Mincho=MS PMincho +proportional.MingLiU=PMingLiU +proportional.MingLiU-ExtB=PMingLiU-ExtB + +# Font File Names + +filename.Arial=ARIAL.TTF +filename.Arial_Bold=ARIALBD.TTF +filename.Arial_Italic=ARIALI.TTF +filename.Arial_Bold_Italic=ARIALBI.TTF + +filename.Courier_New=COUR.TTF +filename.Courier_New_Bold=COURBD.TTF +filename.Courier_New_Italic=COURI.TTF +filename.Courier_New_Bold_Italic=COURBI.TTF + +filename.Times_New_Roman=TIMES.TTF +filename.Times_New_Roman_Bold=TIMESBD.TTF +filename.Times_New_Roman_Italic=TIMESI.TTF +filename.Times_New_Roman_Bold_Italic=TIMESBI.TTF + +filename.SimSun=SIMSUN.TTC +filename.SimSun-18030=SIMSUN18030.TTC +filename.SimSun-ExtB=SIMSUNB.TTF + +filename.MingLiU=MINGLIU.TTC +filename.MingLiU-ExtB=MINGLIUB.TTC +filename.PMingLiU=MINGLIU.TTC +filename.PMingLiU-ExtB=MINGLIUB.TTC +filename.MingLiU_HKSCS=hkscsm3u.ttf + +filename.David=DAVID.TTF +filename.David_Bold=DAVIDBD.TTF + +filename.MS_Mincho=MSMINCHO.TTC +filename.MS_PMincho=MSMINCHO.TTC +filename.MS_Gothic=MSGOTHIC.TTC +filename.MS_PGothic=MSGOTHIC.TTC + +filename.Gulim=gulim.TTC +filename.Batang=batang.TTC +filename.GulimChe=gulim.TTC + +filename.Gautami=gautami.ttf +filename.Iskoola_Pota=iskpota.ttf +filename.Kalinga=kalinga.ttf +filename.Kartika=kartika.ttf +filename.Latha=latha.ttf +filename.Mangal=MANGAL.TTF +filename.Raavi=raavi.ttf +filename.Shruti=shruti.ttf +filename.Tunga=TUNGA.TTF +filename.Vrinda=vrinda.ttf +filename.DokChampa=dokchamp.ttf +filename.Khmer_UI=KhmerUI.ttf +filename.Mongolian_Baiti=monbaiti.ttf +filename.Myanmar_Text=mmrtext.ttf +filename.Symbol=SYMBOL.TTF +filename.Wingdings=WINGDING.TTF + +filename.Sylfaen=sylfaen.ttf +filename.Segoe_UI_Symbol=SEGUISYM.TTF diff --git a/inst/stics/V11.0.0/bin/jre17/lib/jawt.lib b/inst/stics/V11.0.0/bin/jre17/lib/jawt.lib new file mode 100644 index 0000000..61db1dd Binary files /dev/null and b/inst/stics/V11.0.0/bin/jre17/lib/jawt.lib differ diff --git a/inst/stics/V11.0.0/bin/jre17/lib/jrt-fs.jar b/inst/stics/V11.0.0/bin/jre17/lib/jrt-fs.jar new file mode 100644 index 0000000..6b90374 Binary files /dev/null and b/inst/stics/V11.0.0/bin/jre17/lib/jrt-fs.jar differ diff --git a/inst/stics/V11.0.0/bin/jre17/lib/jvm.cfg b/inst/stics/V11.0.0/bin/jre17/lib/jvm.cfg new file mode 100644 index 0000000..97225c8 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/lib/jvm.cfg @@ -0,0 +1,2 @@ +-server KNOWN +-client IGNORE diff --git a/inst/stics/V11.0.0/bin/jre17/lib/jvm.lib b/inst/stics/V11.0.0/bin/jre17/lib/jvm.lib new file mode 100644 index 0000000..a03197c Binary files /dev/null and b/inst/stics/V11.0.0/bin/jre17/lib/jvm.lib differ diff --git a/inst/stics/V11.0.0/bin/jre17/lib/modules b/inst/stics/V11.0.0/bin/jre17/lib/modules new file mode 100644 index 0000000..9bebe76 Binary files /dev/null and b/inst/stics/V11.0.0/bin/jre17/lib/modules differ diff --git a/inst/stics/V11.0.0/bin/jre17/lib/psfont.properties.ja b/inst/stics/V11.0.0/bin/jre17/lib/psfont.properties.ja new file mode 100644 index 0000000..d17cf40 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/lib/psfont.properties.ja @@ -0,0 +1,119 @@ +# +# +# Copyright (c) 1996, 2000, Oracle and/or its affiliates. All rights reserved. +# DO NOT ALTER OR REMOVE COPYRIGHT NOTICES OR THIS FILE HEADER. +# +# This code is free software; you can redistribute it and/or modify it +# under the terms of the GNU General Public License version 2 only, as +# published by the Free Software Foundation. Oracle designates this +# particular file as subject to the "Classpath" exception as provided +# by Oracle in the LICENSE file that accompanied this code. +# +# This code is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License +# version 2 for more details (a copy is included in the LICENSE file that +# accompanied this code). +# +# You should have received a copy of the GNU General Public License version +# 2 along with this work; if not, write to the Free Software Foundation, +# Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA. +# +# Please contact Oracle, 500 Oracle Parkway, Redwood Shores, CA 94065 USA +# or visit www.oracle.com if you need additional information or have any +# questions. +# + +# +# Japanese PostScript printer property file +# +font.num=16 +# +serif=serif +timesroman=serif +sansserif=sansserif +helvetica=sansserif +monospaced=monospaced +courier=monospaced +dialog=sansserif +dialoginput=monospaced +# +serif.latin1.plain=Times-Roman +serif.latin1.italic=Times-Italic +serif.latin1.bolditalic=Times-BoldItalic +serif.latin1.bold=Times-Bold +# +sansserif.latin1.plain=Helvetica +sansserif.latin1.italic=Helvetica-Oblique +sansserif.latin1.bolditalic=Helvetica-BoldOblique +sansserif.latin1.bold=Helvetica-Bold +# +monospaced.latin1.plain=Courier +monospaced.latin1.italic=Courier-Oblique +monospaced.latin1.bolditalic=Courier-BoldOblique +monospaced.latin1.bold=Courier-Bold +# +serif.x11jis0208.plain=Ryumin-Light-H +serif.x11jis0208.italic=Ryumin-Light-H +serif.x11jis0208.bolditalic=Ryumin-Light-H +serif.x11jis0208.bold=Ryumin-Light-H +# +sansserif.x11jis0208.plain=GothicBBB-Medium-H +sansserif.x11jis0208.italic=GothicBBB-Medium-H +sansserif.x11jis0208.bolditalic=GothicBBB-Medium-H +sansserif.x11jis0208.bold=GothicBBB-Medium-H +# +monospaced.x11jis0208.plain=GothicBBB-Medium-H +monospaced.x11jis0208.italic=GothicBBB-Medium-H +monospaced.x11jis0208.bolditalic=GothicBBB-Medium-H +monospaced.x11jis0208.bold=GothicBBB-Medium-H +# +serif.x11jis0201.plain=Ryumin-Light.Hankaku +serif.x11jis0201.italic=Ryumin-Light.Hankaku +serif.x11jis0201.bolditalic=Ryumin-Light.Hankaku +serif.x11jis0201.bold=Ryumin-Light.Hankaku +# +sansserif.x11jis0201.plain=GothicBBB-Medium.Hankaku +sansserif.x11jis0201.italic=GothicBBB-Medium.Hankaku +sansserif.x11jis0201.bolditalic=GothicBBB-Medium.Hankaku +sansserif.x11jis0201.bold=GothicBBB-Medium.Hankaku +# +monospaced.x11jis0201.plain=GothicBBB-Medium.Hankaku +monospaced.x11jis0201.italic=GothicBBB-Medium.Hankaku +monospaced.x11jis0201.bolditalic=GothicBBB-Medium.Hankaku +monospaced.x11jis0201.bold=GothicBBB-Medium.Hankaku +# +Helvetica=0 +Helvetica-Bold=1 +Helvetica-Oblique=2 +Helvetica-BoldOblique=3 +Times-Roman=4 +Times-Bold=5 +Times-Italic=6 +Times-BoldItalic=7 +Courier=8 +Courier-Bold=9 +Courier-Oblique=10 +Courier-BoldOblique=11 +GothicBBB-Medium-H=12 +Ryumin-Light-H=13 +GothicBBB-Medium.Hankaku=14 +Ryumin-Light.Hankaku=15 +# +font.0=Helvetica ISOF +font.1=Helvetica-Bold ISOF +font.2=Helvetica-Oblique ISOF +font.3=Helvetica-BoldOblique ISOF +font.4=Times-Roman ISOF +font.5=Times-Bold ISOF +font.6=Times-Italic ISOF +font.7=Times-BoldItalic ISOF +font.8=Courier ISOF +font.9=Courier-Bold ISOF +font.10=Courier-Oblique ISOF +font.11=Courier-BoldOblique ISOF +font.12=GothicBBB-Medium-H findfont +font.13=Ryumin-Light-H findfont +font.14=GothicBBB-Medium.Hankaku findfont +font.15=Ryumin-Light.Hankaku findfont +# diff --git a/inst/stics/V11.0.0/bin/jre17/lib/psfontj2d.properties b/inst/stics/V11.0.0/bin/jre17/lib/psfontj2d.properties new file mode 100644 index 0000000..5eb2c4b --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/lib/psfontj2d.properties @@ -0,0 +1,323 @@ +# +# +# Copyright (c) 1999, Oracle and/or its affiliates. All rights reserved. +# DO NOT ALTER OR REMOVE COPYRIGHT NOTICES OR THIS FILE HEADER. +# +# This code is free software; you can redistribute it and/or modify it +# under the terms of the GNU General Public License version 2 only, as +# published by the Free Software Foundation. Oracle designates this +# particular file as subject to the "Classpath" exception as provided +# by Oracle in the LICENSE file that accompanied this code. +# +# This code is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License +# version 2 for more details (a copy is included in the LICENSE file that +# accompanied this code). +# +# You should have received a copy of the GNU General Public License version +# 2 along with this work; if not, write to the Free Software Foundation, +# Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA. +# +# Please contact Oracle, 500 Oracle Parkway, Redwood Shores, CA 94065 USA +# or visit www.oracle.com if you need additional information or have any +# questions. + +# +# PostScript printer property file for Java 2D printing. +# +# WARNING: This is an internal implementation file, not a public file. +# Any customisation or reliance on the existence of this file and its +# contents or syntax is discouraged and unsupported. +# It may be incompatibly changed or removed without any notice. +# +# +font.num=35 +# +# Legacy logical font family names and logical font aliases should all +# map to the primary logical font names. +# +serif=serif +times=serif +timesroman=serif +sansserif=sansserif +helvetica=sansserif +dialog=sansserif +dialoginput=monospaced +monospaced=monospaced +courier=monospaced +# +# Next, physical fonts which can be safely mapped to standard postscript fonts +# These keys generally map to a value which is the same as the key, so +# the key/value is just a way to say the font has a mapping. +# Sometimes however we map more than one screen font to the same PS font. +# +avantgarde=avantgarde_book +avantgarde_book=avantgarde_book +avantgarde_demi=avantgarde_demi +avantgarde_book_oblique=avantgarde_book_oblique +avantgarde_demi_oblique=avantgarde_demi_oblique +# +itcavantgarde=avantgarde_book +itcavantgarde=avantgarde_book +itcavantgarde_demi=avantgarde_demi +itcavantgarde_oblique=avantgarde_book_oblique +itcavantgarde_demi_oblique=avantgarde_demi_oblique +# +bookman=bookman_light +bookman_light=bookman_light +bookman_demi=bookman_demi +bookman_light_italic=bookman_light_italic +bookman_demi_italic=bookman_demi_italic +# +# Exclude "helvetica" on its own as that's a legacy name for a logical font +helvetica_bold=helvetica_bold +helvetica_oblique=helvetica_oblique +helvetica_bold_oblique=helvetica_bold_oblique +# +itcbookman_light=bookman_light +itcbookman_demi=bookman_demi +itcbookman_light_italic=bookman_light_italic +itcbookman_demi_italic=bookman_demi_italic +# +# Exclude "courier" on its own as that's a legacy name for a logical font +courier_bold=courier_bold +courier_oblique=courier_oblique +courier_bold_oblique=courier_bold_oblique +# +courier_new=courier +courier_new_bold=courier_bold +# +monotype_century_schoolbook=newcenturyschoolbook +monotype_century_schoolbook_bold=newcenturyschoolbook_bold +monotype_century_schoolbook_italic=newcenturyschoolbook_italic +monotype_century_schoolbook_bold_italic=newcenturyschoolbook_bold_italic +# +newcenturyschoolbook=newcenturyschoolbook +newcenturyschoolbook_bold=newcenturyschoolbook_bold +newcenturyschoolbook_italic=newcenturyschoolbook_italic +newcenturyschoolbook_bold_italic=newcenturyschoolbook_bold_italic +# +palatino=palatino +palatino_bold=palatino_bold +palatino_italic=palatino_italic +palatino_bold_italic=palatino_bold_italic +# +# Exclude "times" on its own as that's a legacy name for a logical font +times_bold=times_roman_bold +times_italic=times_roman_italic +times_bold_italic=times_roman_bold_italic +# +times_roman=times_roman +times_roman_bold=times_roman_bold +times_roman_italic=times_roman_italic +times_roman_bold_italic=times_roman_bold_italic +# +times_new_roman=times_roman +times_new_roman_bold=times_roman_bold +times_new_roman_italic=times_roman_italic +times_new_roman_bold_italic=times_roman_bold_italic +# +zapfchancery_italic=zapfchancery_italic +itczapfchancery_italic=zapfchancery_italic +# +# Next the mapping of the font name + charset + style to Postscript font name +# for the logical fonts. +# +serif.latin1.plain=Times-Roman +serif.latin1.bold=Times-Bold +serif.latin1.italic=Times-Italic +serif.latin1.bolditalic=Times-BoldItalic +serif.symbol.plain=Symbol +serif.dingbats.plain=ZapfDingbats +serif.symbol.bold=Symbol +serif.dingbats.bold=ZapfDingbats +serif.symbol.italic=Symbol +serif.dingbats.italic=ZapfDingbats +serif.symbol.bolditalic=Symbol +serif.dingbats.bolditalic=ZapfDingbats +# +sansserif.latin1.plain=Helvetica +sansserif.latin1.bold=Helvetica-Bold +sansserif.latin1.italic=Helvetica-Oblique +sansserif.latin1.bolditalic=Helvetica-BoldOblique +sansserif.symbol.plain=Symbol +sansserif.dingbats.plain=ZapfDingbats +sansserif.symbol.bold=Symbol +sansserif.dingbats.bold=ZapfDingbats +sansserif.symbol.italic=Symbol +sansserif.dingbats.italic=ZapfDingbats +sansserif.symbol.bolditalic=Symbol +sansserif.dingbats.bolditalic=ZapfDingbats +# +monospaced.latin1.plain=Courier +monospaced.latin1.bold=Courier-Bold +monospaced.latin1.italic=Courier-Oblique +monospaced.latin1.bolditalic=Courier-BoldOblique +monospaced.symbol.plain=Symbol +monospaced.dingbats.plain=ZapfDingbats +monospaced.symbol.bold=Symbol +monospaced.dingbats.bold=ZapfDingbats +monospaced.symbol.italic=Symbol +monospaced.dingbats.italic=ZapfDingbats +monospaced.symbol.bolditalic=Symbol +monospaced.dingbats.bolditalic=ZapfDingbats +# +# Next the mapping of the font name + charset + style to Postscript font name +# for the physical fonts. Since these always report style as plain, the +# style key is always plain. So we map using the face name to the correct +# style for the postscript font. This is possible since the face names can +# be replied upon to be different for each style. +# However an application may try to create a Font applying a style to an +# physical name. We want to map to the correct Postscript font there too +# if possible but we do not map cases where the application tries to +# augment a style (eg ask for a bold version of a bold font) +# Defer to the 2D package to attempt create an artificially styled version +# +avantgarde_book.latin1.plain=AvantGarde-Book +avantgarde_demi.latin1.plain=AvantGarde-Demi +avantgarde_book_oblique.latin1.plain=AvantGarde-BookOblique +avantgarde_demi_oblique.latin1.plain=AvantGarde-DemiOblique +# +avantgarde_book.latin1.bold=AvantGarde-Demi +avantgarde_book.latin1.italic=AvantGarde-BookOblique +avantgarde_book.latin1.bolditalic=AvantGarde-DemiOblique +avantgarde_demi.latin1.italic=AvantGarde-DemiOblique +avantgarde_book_oblique.latin1.bold=AvantGarde-DemiOblique +# +bookman_light.latin1.plain=Bookman-Light +bookman_demi.latin1.plain=Bookman-Demi +bookman_light_italic.latin1.plain=Bookman-LightItalic +bookman_demi_italic.latin1.plain=Bookman-DemiItalic +# +bookman_light.latin1.bold=Bookman-Demi +bookman_light.latin1.italic=Bookman-LightItalic +bookman_light.latin1.bolditalic=Bookman-DemiItalic +bookman_light_bold.latin1.italic=Bookman-DemiItalic +bookman_light_italic.latin1.bold=Bookman-DemiItalic +# +courier.latin1.plain=Courier +courier_bold.latin1.plain=Courier-Bold +courier_oblique.latin1.plain=Courier-Oblique +courier_bold_oblique.latin1.plain=Courier-BoldOblique +courier.latin1.bold=Courier-Bold +courier.latin1.italic=Courier-Oblique +courier.latin1.bolditalic=Courier-BoldOblique +courier_bold.latin1.italic=Courier-BoldOblique +courier_italic.latin1.bold=Courier-BoldOblique +# +helvetica_bold.latin1.plain=Helvetica-Bold +helvetica_oblique.latin1.plain=Helvetica-Oblique +helvetica_bold_oblique.latin1.plain=Helvetica-BoldOblique +helvetica.latin1.bold=Helvetica-Bold +helvetica.latin1.italic=Helvetica-Oblique +helvetica.latin1.bolditalic=Helvetica-BoldOblique +helvetica_bold.latin1.italic=Helvetica-BoldOblique +helvetica_italic.latin1.bold=Helvetica-BoldOblique +# +newcenturyschoolbook.latin1.plain=NewCenturySchlbk-Roman +newcenturyschoolbook_bold.latin1.plain=NewCenturySchlbk-Bold +newcenturyschoolbook_italic.latin1.plain=NewCenturySchlbk-Italic +newcenturyschoolbook_bold_italic.latin1.plain=NewCenturySchlbk-BoldItalic +newcenturyschoolbook.latin1.bold=NewCenturySchlbk-Bold +newcenturyschoolbook.latin1.italic=NewCenturySchlbk-Italic +newcenturyschoolbook.latin1.bolditalic=NewCenturySchlbk-BoldItalic +newcenturyschoolbook_bold.latin1.italic=NewCenturySchlbk-BoldItalic +newcenturyschoolbook_italic.latin1.bold=NewCenturySchlbk-BoldItalic +# +palatino.latin1.plain=Palatino-Roman +palatino_bold.latin1.plain=Palatino-Bold +palatino_italic.latin1.plain=Palatino-Italic +palatino_bold_italic.latin1.plain=Palatino-BoldItalic +palatino.latin1.bold=Palatino-Bold +palatino.latin1.italic=Palatino-Italic +palatino.latin1.bolditalic=Palatino-BoldItalic +palatino_bold.latin1.italic=Palatino-BoldItalic +palatino_italic.latin1.bold=Palatino-BoldItalic +# +times_roman.latin1.plain=Times-Roman +times_roman_bold.latin1.plain=Times-Bold +times_roman_italic.latin1.plain=Times-Italic +times_roman_bold_italic.latin1.plain=Times-BoldItalic +times_roman.latin1.bold=Times-Bold +times_roman.latin1.italic=Times-Italic +times_roman.latin1.bolditalic=Times-BoldItalic +times_roman_bold.latin1.italic=Times-BoldItalic +times_roman_italic.latin1.bold=Times-BoldItalic +# +zapfchancery_italic.latin1.plain=ZapfChancery-MediumItalic +# +# Finally the mappings of PS font names to indexes. +# +AvantGarde-Book=0 +AvantGarde-BookOblique=1 +AvantGarde-Demi=2 +AvantGarde-DemiOblique=3 +Bookman-Demi=4 +Bookman-DemiItalic=5 +Bookman-Light=6 +Bookman-LightItalic=7 +Courier=8 +Courier-Bold=9 +Courier-BoldOblique=10 +Courier-Oblique=11 +Helvetica=12 +Helvetica-Bold=13 +Helvetica-BoldOblique=14 +Helvetica-Narrow=15 +Helvetica-Narrow-Bold=16 +Helvetica-Narrow-BoldOblique=17 +Helvetica-Narrow-Oblique=18 +Helvetica-Oblique=19 +NewCenturySchlbk-Bold=20 +NewCenturySchlbk-BoldItalic=21 +NewCenturySchlbk-Italic=22 +NewCenturySchlbk-Roman=23 +Palatino-Bold=24 +Palatino-BoldItalic=25 +Palatino-Italic=26 +Palatino-Roman=27 +Symbol=28 +Times-Bold=29 +Times-BoldItalic=30 +Times-Italic=31 +Times-Roman=32 +ZapfDingbats=33 +ZapfChancery-MediumItalic=34 +# +font.0=AvantGarde-Book ISOF +font.1=AvantGarde-BookOblique ISOF +font.2=AvantGarde-Demi ISOF +font.3=AvantGarde-DemiOblique ISOF +font.4=Bookman-Demi ISOF +font.5=Bookman-DemiItalic ISOF +font.6=Bookman-Light ISOF +font.7=Bookman-LightItalic ISOF +font.8=Courier ISOF +font.9=Courier-Bold ISOF +font.10=Courier-BoldOblique ISOF +font.11=Courier-Oblique ISOF +font.12=Helvetica ISOF +font.13=Helvetica-Bold ISOF +font.14=Helvetica-BoldOblique ISOF +font.15=Helvetica-Narrow ISOF +font.16=Helvetica-Narrow-Bold ISOF +font.17=Helvetica-Narrow-BoldOblique ISOF +font.18=Helvetica-Narrow-Oblique ISOF +font.19=Helvetica-Oblique ISOF +font.20=NewCenturySchlbk-Bold ISOF +font.21=NewCenturySchlbk-BoldItalic ISOF +font.22=NewCenturySchlbk-Italic ISOF +font.23=NewCenturySchlbk-Roman ISOF +font.24=Palatino-Bold ISOF +font.25=Palatino-BoldItalic ISOF +font.26=Palatino-Italic ISOF +font.27=Palatino-Roman ISOF +font.28=Symbol findfont +font.29=Times-Bold ISOF +font.30=Times-BoldItalic ISOF +font.31=Times-Italic ISOF +font.32=Times-Roman ISOF +font.33=ZapfDingbats findfont +font.34=ZapfChancery-MediumItalic ISOF +# diff --git a/inst/stics/V11.0.0/bin/jre17/lib/security/blocked.certs b/inst/stics/V11.0.0/bin/jre17/lib/security/blocked.certs new file mode 100644 index 0000000..4fd291b --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/lib/security/blocked.certs @@ -0,0 +1,39 @@ +Algorithm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diff --git a/inst/stics/V11.0.0/bin/jre17/lib/security/cacerts b/inst/stics/V11.0.0/bin/jre17/lib/security/cacerts new file mode 100644 index 0000000..9066a15 Binary files /dev/null and b/inst/stics/V11.0.0/bin/jre17/lib/security/cacerts differ diff --git a/inst/stics/V11.0.0/bin/jre17/lib/security/default.policy b/inst/stics/V11.0.0/bin/jre17/lib/security/default.policy new file mode 100644 index 0000000..5982d27 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/lib/security/default.policy @@ -0,0 +1,241 @@ +// +// Permissions required by modules stored in a run-time image and loaded +// by the platform class loader. +// +// NOTE that this file is not intended to be modified. If additional +// permissions need to be granted to the modules in this file, it is +// recommended that they be configured in a separate policy file or +// ${java.home}/conf/security/java.policy. +// + + +grant codeBase "jrt:/java.compiler" { + permission java.security.AllPermission; +}; + + +grant codeBase "jrt:/java.net.http" { + permission java.lang.RuntimePermission "accessClassInPackage.sun.net"; + permission java.lang.RuntimePermission "accessClassInPackage.sun.net.util"; + permission java.lang.RuntimePermission "accessClassInPackage.sun.net.www"; + permission java.lang.RuntimePermission "accessClassInPackage.jdk.internal.misc"; + permission java.lang.RuntimePermission "modifyThread"; + permission java.net.SocketPermission "*","connect,resolve"; + permission java.net.URLPermission "http:*","*:*"; + permission java.net.URLPermission "https:*","*:*"; + permission java.net.URLPermission "ws:*","*:*"; + permission java.net.URLPermission "wss:*","*:*"; + permission java.net.URLPermission "socket:*","CONNECT"; // proxy + // For request/response body processors, fromFile, asFile + permission java.io.FilePermission "<>","read,write,delete"; + permission java.util.PropertyPermission "*","read"; + permission java.net.NetPermission "getProxySelector"; +}; + +grant codeBase "jrt:/java.scripting" { + permission java.security.AllPermission; +}; + +grant codeBase "jrt:/java.security.jgss" { + permission java.security.AllPermission; +}; + +grant codeBase "jrt:/java.smartcardio" { + permission javax.smartcardio.CardPermission "*", "*"; + permission java.lang.RuntimePermission "loadLibrary.j2pcsc"; + permission java.lang.RuntimePermission + "accessClassInPackage.sun.security.jca"; + permission java.lang.RuntimePermission + "accessClassInPackage.sun.security.util"; + permission java.util.PropertyPermission + "javax.smartcardio.TerminalFactory.DefaultType", "read"; + permission java.util.PropertyPermission "os.name", "read"; + permission java.util.PropertyPermission "os.arch", "read"; + permission java.util.PropertyPermission "sun.arch.data.model", "read"; + permission java.util.PropertyPermission + "sun.security.smartcardio.library", "read"; + permission java.util.PropertyPermission + "sun.security.smartcardio.t0GetResponse", "read"; + permission java.util.PropertyPermission + "sun.security.smartcardio.t1GetResponse", "read"; + permission java.util.PropertyPermission + "sun.security.smartcardio.t1StripLe", "read"; + // needed for looking up native PC/SC library + permission java.io.FilePermission "<>","read"; + permission java.security.SecurityPermission "putProviderProperty.SunPCSC"; + permission java.security.SecurityPermission + "clearProviderProperties.SunPCSC"; + permission java.security.SecurityPermission + "removeProviderProperty.SunPCSC"; +}; + +grant codeBase "jrt:/java.sql" { + permission java.security.AllPermission; +}; + +grant codeBase "jrt:/java.sql.rowset" { + permission java.security.AllPermission; +}; + + +grant codeBase "jrt:/java.xml.crypto" { + permission java.lang.RuntimePermission + "getStackWalkerWithClassReference"; + permission java.lang.RuntimePermission + "accessClassInPackage.sun.security.util"; + permission java.util.PropertyPermission "*", "read"; + permission java.security.SecurityPermission "putProviderProperty.XMLDSig"; + permission java.security.SecurityPermission + "clearProviderProperties.XMLDSig"; + permission java.security.SecurityPermission + "removeProviderProperty.XMLDSig"; + permission java.security.SecurityPermission + "com.sun.org.apache.xml.internal.security.register"; + permission java.security.SecurityPermission + "getProperty.jdk.xml.dsig.secureValidationPolicy"; + permission java.lang.RuntimePermission + "accessClassInPackage.com.sun.org.apache.xml.internal.*"; + permission java.lang.RuntimePermission + "accessClassInPackage.com.sun.org.apache.xpath.internal"; + permission java.lang.RuntimePermission + "accessClassInPackage.com.sun.org.apache.xpath.internal.*"; + permission java.io.FilePermission "<>","read"; + permission java.net.SocketPermission "*", "connect,resolve"; +}; + + +grant codeBase "jrt:/jdk.accessibility" { + permission java.lang.RuntimePermission "accessClassInPackage.sun.awt"; +}; + +grant codeBase "jrt:/jdk.charsets" { + permission java.util.PropertyPermission "os.name", "read"; + permission java.lang.RuntimePermission "charsetProvider"; + permission java.lang.RuntimePermission + "accessClassInPackage.jdk.internal.access"; + permission java.lang.RuntimePermission + "accessClassInPackage.jdk.internal.misc"; + permission java.lang.RuntimePermission "accessClassInPackage.sun.nio.cs"; +}; + +grant codeBase "jrt:/jdk.crypto.ec" { + permission java.lang.RuntimePermission + "accessClassInPackage.sun.security.*"; + permission java.lang.RuntimePermission "loadLibrary.sunec"; + permission java.security.SecurityPermission "putProviderProperty.SunEC"; + permission java.security.SecurityPermission "clearProviderProperties.SunEC"; + permission java.security.SecurityPermission "removeProviderProperty.SunEC"; +}; + +grant codeBase "jrt:/jdk.crypto.cryptoki" { + permission java.lang.RuntimePermission + "accessClassInPackage.com.sun.crypto.provider"; + permission java.lang.RuntimePermission "accessClassInPackage.jdk.internal.misc"; + permission java.lang.RuntimePermission + "accessClassInPackage.sun.security.*"; + permission java.lang.RuntimePermission "accessClassInPackage.sun.nio.ch"; + permission java.lang.RuntimePermission "loadLibrary.j2pkcs11"; + permission java.util.PropertyPermission "sun.security.pkcs11.allowSingleThreadedModules", "read"; + permission java.util.PropertyPermission "sun.security.pkcs11.disableKeyExtraction", "read"; + permission java.util.PropertyPermission "os.name", "read"; + permission java.util.PropertyPermission "os.arch", "read"; + permission java.util.PropertyPermission "jdk.crypto.KeyAgreement.legacyKDF", "read"; + permission java.security.SecurityPermission "putProviderProperty.*"; + permission java.security.SecurityPermission "clearProviderProperties.*"; + permission java.security.SecurityPermission "removeProviderProperty.*"; + permission java.security.SecurityPermission + "getProperty.auth.login.defaultCallbackHandler"; + permission java.security.SecurityPermission "authProvider.*"; + // Needed for reading PKCS11 config file and NSS library check + permission java.io.FilePermission "<>", "read"; +}; + +grant codeBase "jrt:/jdk.dynalink" { + permission java.security.AllPermission; +}; + +grant codeBase "jrt:/jdk.httpserver" { + permission java.security.AllPermission; +}; + +grant codeBase "jrt:/jdk.internal.le" { + permission java.security.AllPermission; +}; + +grant codeBase "jrt:/jdk.internal.vm.compiler" { + permission java.security.AllPermission; +}; + +grant codeBase "jrt:/jdk.internal.vm.compiler.management" { + permission java.lang.RuntimePermission "accessClassInPackage.jdk.internal.vm.compiler.collections"; + permission java.lang.RuntimePermission "accessClassInPackage.jdk.vm.ci.runtime"; + permission java.lang.RuntimePermission "accessClassInPackage.jdk.vm.ci.services"; + permission java.lang.RuntimePermission "accessClassInPackage.org.graalvm.compiler.core.common"; + permission java.lang.RuntimePermission "accessClassInPackage.org.graalvm.compiler.debug"; + permission java.lang.RuntimePermission "accessClassInPackage.org.graalvm.compiler.hotspot"; + permission java.lang.RuntimePermission "accessClassInPackage.org.graalvm.compiler.options"; + permission java.lang.RuntimePermission "accessClassInPackage.org.graalvm.compiler.phases.common.jmx"; + permission java.lang.RuntimePermission "accessClassInPackage.org.graalvm.compiler.serviceprovider"; +}; + +grant codeBase "jrt:/jdk.jsobject" { + permission java.security.AllPermission; +}; + +grant codeBase "jrt:/jdk.localedata" { + permission java.lang.RuntimePermission "accessClassInPackage.sun.text.*"; + permission java.lang.RuntimePermission "accessClassInPackage.sun.util.*"; +}; + +grant codeBase "jrt:/jdk.naming.dns" { + permission java.security.AllPermission; +}; + +grant codeBase "jrt:/jdk.scripting.nashorn" { + permission java.security.AllPermission; +}; + +grant codeBase "jrt:/jdk.scripting.nashorn.shell" { + permission java.security.AllPermission; +}; + +grant codeBase "jrt:/jdk.security.auth" { + permission java.security.AllPermission; +}; + +grant codeBase "jrt:/jdk.security.jgss" { + permission java.security.AllPermission; +}; + +grant codeBase "jrt:/jdk.zipfs" { + permission java.io.FilePermission "<>", "read,write,delete"; + permission java.lang.RuntimePermission "fileSystemProvider"; + permission java.lang.RuntimePermission "accessUserInformation"; + permission java.util.PropertyPermission "os.name", "read"; + permission java.util.PropertyPermission "user.dir", "read"; + permission java.util.PropertyPermission "user.name", "read"; +}; + +// permissions needed by applications using java.desktop module +grant { + permission java.lang.RuntimePermission "accessClassInPackage.com.sun.beans"; + permission java.lang.RuntimePermission "accessClassInPackage.com.sun.beans.*"; + permission java.lang.RuntimePermission "accessClassInPackage.com.sun.java.swing.plaf.*"; + permission java.lang.RuntimePermission "accessClassInPackage.com.apple.*"; +}; +grant codeBase "jrt:/jdk.accessibility" { + permission java.security.AllPermission; +}; + +grant codeBase "jrt:/jdk.crypto.mscapi" { + permission java.lang.RuntimePermission + "accessClassInPackage.sun.security.*"; + permission java.lang.RuntimePermission "loadLibrary.sunmscapi"; + permission java.security.SecurityPermission "putProviderProperty.SunMSCAPI"; + permission java.security.SecurityPermission + "clearProviderProperties.SunMSCAPI"; + permission java.security.SecurityPermission + "removeProviderProperty.SunMSCAPI"; + permission java.security.SecurityPermission "authProvider.SunMSCAPI"; + permission java.util.PropertyPermission "*", "read"; +}; diff --git a/inst/stics/V11.0.0/bin/jre17/lib/security/public_suffix_list.dat b/inst/stics/V11.0.0/bin/jre17/lib/security/public_suffix_list.dat new file mode 100644 index 0000000..06a3a69 Binary files /dev/null and b/inst/stics/V11.0.0/bin/jre17/lib/security/public_suffix_list.dat differ diff --git a/inst/stics/V11.0.0/bin/jre17/lib/tzdb.dat b/inst/stics/V11.0.0/bin/jre17/lib/tzdb.dat new file mode 100644 index 0000000..671b6fa Binary files /dev/null and b/inst/stics/V11.0.0/bin/jre17/lib/tzdb.dat differ diff --git a/inst/stics/V11.0.0/bin/jre17/lib/tzmappings b/inst/stics/V11.0.0/bin/jre17/lib/tzmappings new file mode 100644 index 0000000..cd38299 --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/lib/tzmappings @@ -0,0 +1,505 @@ +AUS Central Standard Time:AU:Australia/Darwin: +AUS Central Standard Time:001:Australia/Darwin: +AUS Eastern Standard Time:AU:Australia/Sydney: +AUS Eastern Standard Time:001:Australia/Sydney: +Afghanistan Standard Time:AF:Asia/Kabul: +Afghanistan Standard Time:001:Asia/Kabul: +Alaskan Standard Time:US:America/Anchorage: +Alaskan Standard Time:001:America/Anchorage: +Aleutian Standard Time:US:America/Adak: +Aleutian Standard Time:001:America/Adak: +Altai Standard Time:RU:Asia/Barnaul: +Altai Standard Time:001:Asia/Barnaul: +Arab Standard Time:BH:Asia/Bahrain: +Arab Standard Time:KW:Asia/Kuwait: +Arab Standard Time:QA:Asia/Qatar: +Arab Standard Time:SA:Asia/Riyadh: +Arab Standard Time:YE:Asia/Aden: +Arab Standard Time:001:Asia/Riyadh: +Arabian Standard Time:AE:Asia/Dubai: +Arabian Standard Time:OM:Asia/Muscat: +Arabian Standard Time:ZZ:Etc/GMT-4: +Arabian Standard Time:001:Asia/Dubai: +Arabic Standard Time:IQ:Asia/Baghdad: +Arabic Standard Time:001:Asia/Baghdad: +Argentina Standard Time:AR:America/Buenos_Aires: +Argentina Standard Time:001:America/Buenos_Aires: +Astrakhan Standard Time:RU:Europe/Astrakhan: +Astrakhan Standard Time:001:Europe/Astrakhan: +Atlantic Standard Time:BM:Atlantic/Bermuda: +Atlantic Standard Time:CA:America/Halifax: +Atlantic Standard Time:GL:America/Thule: +Atlantic Standard Time:001:America/Halifax: +Aus Central W. Standard Time:AU:Australia/Eucla: +Aus Central W. Standard Time:001:Australia/Eucla: +Azerbaijan Standard Time:AZ:Asia/Baku: +Azerbaijan Standard Time:001:Asia/Baku: +Azores Standard Time:GL:America/Scoresbysund: +Azores Standard Time:PT:Atlantic/Azores: +Azores Standard Time:001:Atlantic/Azores: +Bahia Standard Time:BR:America/Bahia: +Bahia Standard Time:001:America/Bahia: +Bangladesh Standard Time:BD:Asia/Dhaka: +Bangladesh Standard Time:BT:Asia/Thimphu: +Bangladesh Standard Time:001:Asia/Dhaka: +Belarus Standard Time:BY:Europe/Minsk: +Belarus Standard Time:001:Europe/Minsk: +Bougainville Standard Time:PG:Pacific/Bougainville: +Bougainville Standard Time:001:Pacific/Bougainville: +Canada Central Standard Time:CA:America/Regina: +Canada Central Standard Time:001:America/Regina: +Cape Verde Standard Time:CV:Atlantic/Cape_Verde: +Cape Verde Standard Time:ZZ:Etc/GMT+1: +Cape Verde Standard Time:001:Atlantic/Cape_Verde: +Caucasus Standard Time:AM:Asia/Yerevan: +Caucasus Standard Time:001:Asia/Yerevan: +Cen. Australia Standard Time:AU:Australia/Adelaide: +Cen. Australia Standard Time:001:Australia/Adelaide: +Central America Standard Time:BZ:America/Belize: +Central America Standard Time:CR:America/Costa_Rica: +Central America Standard Time:EC:Pacific/Galapagos: +Central America Standard Time:GT:America/Guatemala: +Central America Standard Time:HN:America/Tegucigalpa: +Central America Standard Time:NI:America/Managua: +Central America Standard Time:SV:America/El_Salvador: +Central America Standard Time:ZZ:Etc/GMT+6: +Central America Standard Time:001:America/Guatemala: +Central Asia Standard Time:AQ:Antarctica/Vostok: +Central Asia Standard Time:CN:Asia/Urumqi: +Central Asia Standard Time:IO:Indian/Chagos: +Central Asia Standard Time:KG:Asia/Bishkek: +Central Asia Standard Time:KZ:Asia/Almaty: +Central Asia Standard Time:ZZ:Etc/GMT-6: +Central Asia Standard Time:001:Asia/Almaty: +Central Brazilian Standard Time:BR:America/Cuiaba: +Central Brazilian Standard Time:001:America/Cuiaba: +Central Europe Standard Time:AL:Europe/Tirane: +Central Europe Standard Time:CZ:Europe/Prague: +Central Europe Standard Time:HU:Europe/Budapest: +Central Europe Standard Time:ME:Europe/Podgorica: +Central Europe Standard Time:RS:Europe/Belgrade: +Central Europe Standard Time:SI:Europe/Ljubljana: +Central Europe Standard Time:SK:Europe/Bratislava: +Central Europe Standard Time:001:Europe/Budapest: +Central European Standard Time:BA:Europe/Sarajevo: +Central European Standard Time:HR:Europe/Zagreb: +Central European Standard Time:MK:Europe/Skopje: +Central European Standard Time:PL:Europe/Warsaw: +Central European Standard Time:001:Europe/Warsaw: +Central Pacific Standard Time:AQ:Antarctica/Casey: +Central Pacific Standard Time:FM:Pacific/Ponape: +Central Pacific Standard Time:NC:Pacific/Noumea: +Central Pacific Standard Time:SB:Pacific/Guadalcanal: +Central Pacific Standard Time:VU:Pacific/Efate: +Central Pacific Standard Time:ZZ:Etc/GMT-11: +Central Pacific Standard Time:001:Pacific/Guadalcanal: +Central Standard Time:CA:America/Winnipeg: +Central Standard Time:MX:America/Matamoros: +Central Standard Time:US:America/Chicago: +Central Standard Time:ZZ:CST6CDT: +Central Standard Time:001:America/Chicago: +Central Standard Time (Mexico):MX:America/Mexico_City: +Central Standard Time (Mexico):001:America/Mexico_City: +Chatham Islands Standard Time:NZ:Pacific/Chatham: +Chatham Islands Standard Time:001:Pacific/Chatham: +China Standard Time:CN:Asia/Shanghai: +China Standard Time:HK:Asia/Hong_Kong: +China Standard Time:MO:Asia/Macau: +China Standard Time:001:Asia/Shanghai: +Cuba Standard Time:CU:America/Havana: +Cuba Standard Time:001:America/Havana: +Dateline Standard Time:ZZ:Etc/GMT+12: +Dateline Standard Time:001:Etc/GMT+12: +E. Africa Standard Time:AQ:Antarctica/Syowa: +E. Africa Standard Time:DJ:Africa/Djibouti: +E. Africa Standard Time:ER:Africa/Asmera: +E. Africa Standard Time:ET:Africa/Addis_Ababa: +E. Africa Standard Time:KE:Africa/Nairobi: +E. Africa Standard Time:KM:Indian/Comoro: +E. Africa Standard Time:MG:Indian/Antananarivo: +E. Africa Standard Time:SO:Africa/Mogadishu: +E. Africa Standard Time:TZ:Africa/Dar_es_Salaam: +E. Africa Standard Time:UG:Africa/Kampala: +E. Africa Standard Time:YT:Indian/Mayotte: +E. Africa Standard Time:ZZ:Etc/GMT-3: +E. Africa Standard Time:001:Africa/Nairobi: +E. Australia Standard Time:AU:Australia/Brisbane: +E. Australia Standard Time:001:Australia/Brisbane: +E. Europe Standard Time:MD:Europe/Chisinau: +E. Europe Standard Time:001:Europe/Chisinau: +E. South America Standard Time:BR:America/Sao_Paulo: +E. South America Standard Time:001:America/Sao_Paulo: +Easter Island Standard Time:CL:Pacific/Easter: +Easter Island Standard Time:001:Pacific/Easter: +Eastern Standard Time:BS:America/Nassau: +Eastern Standard Time:CA:America/Toronto: +Eastern Standard Time:US:America/New_York: +Eastern Standard Time:ZZ:EST5EDT: +Eastern Standard Time:001:America/New_York: +Eastern Standard Time (Mexico):MX:America/Cancun: +Eastern Standard Time (Mexico):001:America/Cancun: +Egypt Standard Time:EG:Africa/Cairo: +Egypt Standard Time:001:Africa/Cairo: +Ekaterinburg Standard Time:RU:Asia/Yekaterinburg: +Ekaterinburg Standard Time:001:Asia/Yekaterinburg: +FLE Standard Time:AX:Europe/Mariehamn: +FLE Standard Time:BG:Europe/Sofia: +FLE Standard Time:EE:Europe/Tallinn: +FLE Standard Time:FI:Europe/Helsinki: +FLE Standard Time:LT:Europe/Vilnius: +FLE Standard Time:LV:Europe/Riga: +FLE Standard Time:UA:Europe/Kiev: +FLE Standard Time:001:Europe/Kiev: +Fiji Standard Time:FJ:Pacific/Fiji: +Fiji Standard Time:001:Pacific/Fiji: +GMT Standard Time:ES:Atlantic/Canary: +GMT Standard Time:FO:Atlantic/Faeroe: +GMT Standard Time:GB:Europe/London: +GMT Standard Time:GG:Europe/Guernsey: +GMT Standard Time:IE:Europe/Dublin: +GMT Standard Time:IM:Europe/Isle_of_Man: +GMT Standard Time:JE:Europe/Jersey: +GMT Standard Time:PT:Europe/Lisbon: +GMT Standard Time:001:Europe/London: +GTB Standard Time:CY:Asia/Nicosia: +GTB Standard Time:GR:Europe/Athens: +GTB Standard Time:RO:Europe/Bucharest: +GTB Standard Time:001:Europe/Bucharest: +Georgian Standard Time:GE:Asia/Tbilisi: +Georgian Standard Time:001:Asia/Tbilisi: +Greenland Standard Time:GL:America/Godthab: +Greenland Standard Time:001:America/Godthab: +Greenwich Standard Time:BF:Africa/Ouagadougou: +Greenwich Standard Time:CI:Africa/Abidjan: +Greenwich Standard Time:GH:Africa/Accra: +Greenwich Standard Time:GL:America/Danmarkshavn: +Greenwich Standard Time:GM:Africa/Banjul: +Greenwich Standard Time:GN:Africa/Conakry: +Greenwich Standard Time:GW:Africa/Bissau: +Greenwich Standard Time:IS:Atlantic/Reykjavik: +Greenwich Standard Time:LR:Africa/Monrovia: +Greenwich Standard Time:ML:Africa/Bamako: +Greenwich Standard Time:MR:Africa/Nouakchott: +Greenwich Standard Time:SH:Atlantic/St_Helena: +Greenwich Standard Time:SL:Africa/Freetown: +Greenwich Standard Time:SN:Africa/Dakar: +Greenwich Standard Time:TG:Africa/Lome: +Greenwich Standard Time:001:Atlantic/Reykjavik: +Haiti Standard Time:HT:America/Port-au-Prince: +Haiti Standard Time:001:America/Port-au-Prince: +Hawaiian Standard Time:CK:Pacific/Rarotonga: +Hawaiian Standard Time:PF:Pacific/Tahiti: +Hawaiian Standard Time:UM:Pacific/Johnston: +Hawaiian Standard Time:US:Pacific/Honolulu: +Hawaiian Standard Time:ZZ:Etc/GMT+10: +Hawaiian Standard Time:001:Pacific/Honolulu: +India Standard Time:IN:Asia/Calcutta: +India Standard Time:001:Asia/Calcutta: +Iran Standard Time:IR:Asia/Tehran: +Iran Standard Time:001:Asia/Tehran: +Israel Standard Time:IL:Asia/Jerusalem: +Israel Standard Time:001:Asia/Jerusalem: +Jordan Standard Time:JO:Asia/Amman: +Jordan Standard Time:001:Asia/Amman: +Kaliningrad Standard Time:RU:Europe/Kaliningrad: +Kaliningrad Standard Time:001:Europe/Kaliningrad: +Korea Standard Time:KR:Asia/Seoul: +Korea Standard Time:001:Asia/Seoul: +Libya Standard Time:LY:Africa/Tripoli: +Libya Standard Time:001:Africa/Tripoli: +Line Islands Standard Time:KI:Pacific/Kiritimati: +Line Islands Standard Time:ZZ:Etc/GMT-14: +Line Islands Standard Time:001:Pacific/Kiritimati: +Lord Howe Standard Time:AU:Australia/Lord_Howe: +Lord Howe Standard Time:001:Australia/Lord_Howe: +Magadan Standard Time:RU:Asia/Magadan: +Magadan Standard Time:001:Asia/Magadan: +Magallanes Standard Time:CL:America/Punta_Arenas: +Magallanes Standard Time:001:America/Punta_Arenas: +Marquesas Standard Time:PF:Pacific/Marquesas: +Marquesas Standard Time:001:Pacific/Marquesas: +Mauritius Standard Time:MU:Indian/Mauritius: +Mauritius Standard Time:RE:Indian/Reunion: +Mauritius Standard Time:SC:Indian/Mahe: +Mauritius Standard Time:001:Indian/Mauritius: +Middle East Standard Time:LB:Asia/Beirut: +Middle East Standard Time:001:Asia/Beirut: +Montevideo Standard Time:UY:America/Montevideo: +Montevideo Standard Time:001:America/Montevideo: +Morocco Standard Time:EH:Africa/El_Aaiun: +Morocco Standard Time:MA:Africa/Casablanca: +Morocco Standard Time:001:Africa/Casablanca: +Mountain Standard Time:CA:America/Edmonton: +Mountain Standard Time:MX:America/Ojinaga: +Mountain Standard Time:US:America/Denver: +Mountain Standard Time:ZZ:MST7MDT: +Mountain Standard Time:001:America/Denver: +Mountain Standard Time (Mexico):MX:America/Chihuahua: +Mountain Standard Time (Mexico):001:America/Chihuahua: +Myanmar Standard Time:CC:Indian/Cocos: +Myanmar Standard Time:MM:Asia/Rangoon: +Myanmar Standard Time:001:Asia/Rangoon: +N. Central Asia Standard Time:RU:Asia/Novosibirsk: +N. Central Asia Standard Time:001:Asia/Novosibirsk: +Namibia Standard Time:NA:Africa/Windhoek: +Namibia Standard Time:001:Africa/Windhoek: +Nepal Standard Time:NP:Asia/Katmandu: +Nepal Standard Time:001:Asia/Katmandu: +New Zealand Standard Time:AQ:Antarctica/McMurdo: +New Zealand Standard Time:NZ:Pacific/Auckland: +New Zealand Standard Time:001:Pacific/Auckland: +Newfoundland Standard Time:CA:America/St_Johns: +Newfoundland Standard Time:001:America/St_Johns: +Norfolk Standard Time:NF:Pacific/Norfolk: +Norfolk Standard Time:001:Pacific/Norfolk: +North Asia East Standard Time:RU:Asia/Irkutsk: +North Asia East Standard Time:001:Asia/Irkutsk: +North Asia Standard Time:RU:Asia/Krasnoyarsk: +North Asia Standard Time:001:Asia/Krasnoyarsk: +North Korea Standard Time:KP:Asia/Pyongyang: +North Korea Standard Time:001:Asia/Pyongyang: +Omsk Standard Time:RU:Asia/Omsk: +Omsk Standard Time:001:Asia/Omsk: +Pacific SA Standard Time:CL:America/Santiago: +Pacific SA Standard Time:001:America/Santiago: +Pacific Standard Time:CA:America/Vancouver: +Pacific Standard Time:US:America/Los_Angeles: +Pacific Standard Time:ZZ:PST8PDT: +Pacific Standard Time:001:America/Los_Angeles: +Pacific Standard Time (Mexico):MX:America/Tijuana: +Pacific Standard Time (Mexico):001:America/Tijuana: +Pakistan Standard Time:PK:Asia/Karachi: +Pakistan Standard Time:001:Asia/Karachi: +Paraguay Standard Time:PY:America/Asuncion: +Paraguay Standard Time:001:America/Asuncion: +Qyzylorda Standard Time:KZ:Asia/Qyzylorda: +Qyzylorda Standard Time:001:Asia/Qyzylorda: +Romance Standard Time:BE:Europe/Brussels: +Romance Standard Time:DK:Europe/Copenhagen: +Romance Standard Time:ES:Europe/Madrid: +Romance Standard Time:FR:Europe/Paris: +Romance Standard Time:001:Europe/Paris: +Russia Time Zone 10:RU:Asia/Srednekolymsk: +Russia Time Zone 10:001:Asia/Srednekolymsk: +Russia Time Zone 11:RU:Asia/Kamchatka: +Russia Time Zone 11:001:Asia/Kamchatka: +Russia Time Zone 3:RU:Europe/Samara: +Russia Time Zone 3:001:Europe/Samara: +Russian Standard Time:RU:Europe/Moscow: +Russian Standard Time:UA:Europe/Simferopol: +Russian Standard Time:001:Europe/Moscow: +SA Eastern Standard Time:AQ:Antarctica/Rothera: +SA Eastern Standard Time:BR:America/Fortaleza: +SA Eastern Standard Time:FK:Atlantic/Stanley: +SA Eastern Standard Time:GF:America/Cayenne: +SA Eastern Standard Time:SR:America/Paramaribo: +SA Eastern Standard Time:ZZ:Etc/GMT+3: +SA Eastern Standard Time:001:America/Cayenne: +SA Pacific Standard Time:BR:America/Rio_Branco: +SA Pacific Standard Time:CA:America/Coral_Harbour: +SA Pacific Standard Time:CO:America/Bogota: +SA Pacific Standard Time:EC:America/Guayaquil: +SA Pacific Standard Time:JM:America/Jamaica: +SA Pacific Standard Time:KY:America/Cayman: +SA Pacific Standard Time:PA:America/Panama: +SA Pacific Standard Time:PE:America/Lima: +SA Pacific Standard Time:ZZ:Etc/GMT+5: +SA Pacific Standard Time:001:America/Bogota: +SA Western Standard Time:AG:America/Antigua: +SA Western Standard Time:AI:America/Anguilla: +SA Western Standard Time:AW:America/Aruba: +SA Western Standard Time:BB:America/Barbados: +SA Western Standard Time:BL:America/St_Barthelemy: +SA Western Standard Time:BO:America/La_Paz: +SA Western Standard Time:BQ:America/Kralendijk: +SA Western Standard Time:BR:America/Manaus: +SA Western Standard Time:CA:America/Blanc-Sablon: +SA Western Standard Time:CW:America/Curacao: +SA Western Standard Time:DM:America/Dominica: +SA Western Standard Time:DO:America/Santo_Domingo: +SA Western Standard Time:GD:America/Grenada: +SA Western Standard Time:GP:America/Guadeloupe: +SA Western Standard Time:GY:America/Guyana: +SA Western Standard Time:KN:America/St_Kitts: +SA Western Standard Time:LC:America/St_Lucia: +SA Western Standard Time:MF:America/Marigot: +SA Western Standard Time:MQ:America/Martinique: +SA Western Standard Time:MS:America/Montserrat: +SA Western Standard Time:PR:America/Puerto_Rico: +SA Western Standard Time:SX:America/Lower_Princes: +SA Western Standard Time:TT:America/Port_of_Spain: +SA Western Standard Time:VC:America/St_Vincent: +SA Western Standard Time:VG:America/Tortola: +SA Western Standard Time:VI:America/St_Thomas: +SA Western Standard Time:ZZ:Etc/GMT+4: +SA Western Standard Time:001:America/La_Paz: +SE Asia Standard Time:AQ:Antarctica/Davis: +SE Asia Standard Time:CX:Indian/Christmas: +SE Asia Standard Time:ID:Asia/Jakarta: +SE Asia Standard Time:KH:Asia/Phnom_Penh: +SE Asia Standard Time:LA:Asia/Vientiane: +SE Asia Standard Time:TH:Asia/Bangkok: +SE Asia Standard Time:VN:Asia/Saigon: +SE Asia Standard Time:ZZ:Etc/GMT-7: +SE Asia Standard Time:001:Asia/Bangkok: +Saint Pierre Standard Time:PM:America/Miquelon: +Saint Pierre Standard Time:001:America/Miquelon: +Sakhalin Standard Time:RU:Asia/Sakhalin: +Sakhalin Standard Time:001:Asia/Sakhalin: +Samoa Standard Time:WS:Pacific/Apia: +Samoa Standard Time:001:Pacific/Apia: +Sao Tome Standard Time:ST:Africa/Sao_Tome: +Sao Tome Standard Time:001:Africa/Sao_Tome: +Saratov Standard Time:RU:Europe/Saratov: +Saratov Standard Time:001:Europe/Saratov: +Singapore Standard Time:BN:Asia/Brunei: +Singapore Standard Time:ID:Asia/Makassar: +Singapore Standard Time:MY:Asia/Kuala_Lumpur: +Singapore Standard Time:PH:Asia/Manila: +Singapore Standard Time:SG:Asia/Singapore: +Singapore Standard Time:ZZ:Etc/GMT-8: +Singapore Standard Time:001:Asia/Singapore: +South Africa Standard Time:BI:Africa/Bujumbura: +South Africa Standard Time:BW:Africa/Gaborone: +South Africa Standard Time:CD:Africa/Lubumbashi: +South Africa Standard Time:LS:Africa/Maseru: +South Africa Standard Time:MW:Africa/Blantyre: +South Africa Standard Time:MZ:Africa/Maputo: +South Africa Standard Time:RW:Africa/Kigali: +South Africa Standard Time:SS:Africa/Juba: +South Africa Standard Time:SZ:Africa/Mbabane: +South Africa Standard Time:ZA:Africa/Johannesburg: +South Africa Standard Time:ZM:Africa/Lusaka: +South Africa Standard Time:ZW:Africa/Harare: +South Africa Standard Time:ZZ:Etc/GMT-2: +South Africa Standard Time:001:Africa/Johannesburg: +Sri Lanka Standard Time:LK:Asia/Colombo: +Sri Lanka Standard Time:001:Asia/Colombo: +Sudan Standard Time:SD:Africa/Khartoum: +Sudan Standard Time:001:Africa/Khartoum: +Syria Standard Time:SY:Asia/Damascus: +Syria Standard Time:001:Asia/Damascus: +Taipei Standard Time:TW:Asia/Taipei: +Taipei Standard Time:001:Asia/Taipei: +Tasmania Standard Time:AU:Australia/Hobart: +Tasmania Standard Time:001:Australia/Hobart: +Tocantins Standard Time:BR:America/Araguaina: +Tocantins Standard Time:001:America/Araguaina: +Tokyo Standard Time:ID:Asia/Jayapura: +Tokyo Standard Time:JP:Asia/Tokyo: +Tokyo Standard Time:PW:Pacific/Palau: +Tokyo Standard Time:TL:Asia/Dili: +Tokyo Standard Time:ZZ:Etc/GMT-9: +Tokyo Standard Time:001:Asia/Tokyo: +Tomsk Standard Time:RU:Asia/Tomsk: +Tomsk Standard Time:001:Asia/Tomsk: +Tonga Standard Time:TO:Pacific/Tongatapu: +Tonga Standard Time:001:Pacific/Tongatapu: +Transbaikal Standard Time:RU:Asia/Chita: +Transbaikal Standard Time:001:Asia/Chita: +Turkey Standard Time:TR:Europe/Istanbul: +Turkey Standard Time:001:Europe/Istanbul: +Turks And Caicos Standard Time:TC:America/Grand_Turk: +Turks And Caicos Standard Time:001:America/Grand_Turk: +US Eastern Standard Time:US:America/Indianapolis: +US Eastern Standard Time:001:America/Indianapolis: +US Mountain Standard Time:CA:America/Creston: +US Mountain Standard Time:MX:America/Hermosillo: +US Mountain Standard Time:US:America/Phoenix: +US Mountain Standard Time:ZZ:Etc/GMT+7: +US Mountain Standard Time:001:America/Phoenix: +UTC:ZZ:Etc/UTC: +UTC:001:Etc/UTC: +UTC+12:KI:Pacific/Tarawa: +UTC+12:MH:Pacific/Majuro: +UTC+12:NR:Pacific/Nauru: +UTC+12:TV:Pacific/Funafuti: +UTC+12:UM:Pacific/Wake: +UTC+12:WF:Pacific/Wallis: +UTC+12:ZZ:Etc/GMT-12: +UTC+12:001:Etc/GMT-12: +UTC+13:KI:Pacific/Enderbury: +UTC+13:TK:Pacific/Fakaofo: +UTC+13:ZZ:Etc/GMT-13: +UTC+13:001:Etc/GMT-13: +UTC-02:BR:America/Noronha: +UTC-02:GS:Atlantic/South_Georgia: +UTC-02:ZZ:Etc/GMT+2: +UTC-02:001:Etc/GMT+2: +UTC-08:PN:Pacific/Pitcairn: +UTC-08:ZZ:Etc/GMT+8: +UTC-08:001:Etc/GMT+8: +UTC-09:PF:Pacific/Gambier: +UTC-09:ZZ:Etc/GMT+9: +UTC-09:001:Etc/GMT+9: +UTC-11:AS:Pacific/Pago_Pago: +UTC-11:NU:Pacific/Niue: +UTC-11:UM:Pacific/Midway: +UTC-11:ZZ:Etc/GMT+11: +UTC-11:001:Etc/GMT+11: +Ulaanbaatar Standard Time:MN:Asia/Ulaanbaatar: +Ulaanbaatar Standard Time:001:Asia/Ulaanbaatar: +Venezuela Standard Time:VE:America/Caracas: +Venezuela Standard Time:001:America/Caracas: +Vladivostok Standard Time:RU:Asia/Vladivostok: +Vladivostok Standard Time:001:Asia/Vladivostok: +Volgograd Standard Time:RU:Europe/Volgograd: +Volgograd Standard Time:001:Europe/Volgograd: +W. Australia Standard Time:AU:Australia/Perth: +W. Australia Standard Time:001:Australia/Perth: +W. Central Africa Standard Time:AO:Africa/Luanda: +W. Central Africa Standard Time:BJ:Africa/Porto-Novo: +W. Central Africa Standard Time:CD:Africa/Kinshasa: +W. Central Africa Standard Time:CF:Africa/Bangui: +W. Central Africa Standard Time:CG:Africa/Brazzaville: +W. Central Africa Standard Time:CM:Africa/Douala: +W. Central Africa Standard Time:DZ:Africa/Algiers: +W. Central Africa Standard Time:GA:Africa/Libreville: +W. Central Africa Standard Time:GQ:Africa/Malabo: +W. Central Africa Standard Time:NE:Africa/Niamey: +W. Central Africa Standard Time:NG:Africa/Lagos: +W. Central Africa Standard Time:TD:Africa/Ndjamena: +W. Central Africa Standard Time:TN:Africa/Tunis: +W. Central Africa Standard Time:ZZ:Etc/GMT-1: +W. Central Africa Standard Time:001:Africa/Lagos: +W. Europe Standard Time:AD:Europe/Andorra: +W. Europe Standard Time:AT:Europe/Vienna: +W. Europe Standard Time:CH:Europe/Zurich: +W. Europe Standard Time:DE:Europe/Berlin: +W. Europe Standard Time:GI:Europe/Gibraltar: +W. Europe Standard Time:IT:Europe/Rome: +W. Europe Standard Time:LI:Europe/Vaduz: +W. Europe Standard Time:LU:Europe/Luxembourg: +W. Europe Standard Time:MC:Europe/Monaco: +W. Europe Standard Time:MT:Europe/Malta: +W. Europe Standard Time:NL:Europe/Amsterdam: +W. Europe Standard Time:NO:Europe/Oslo: +W. Europe Standard Time:SE:Europe/Stockholm: +W. Europe Standard Time:SJ:Arctic/Longyearbyen: +W. Europe Standard Time:SM:Europe/San_Marino: +W. Europe Standard Time:VA:Europe/Vatican: +W. Europe Standard Time:001:Europe/Berlin: +W. Mongolia Standard Time:MN:Asia/Hovd: +W. Mongolia Standard Time:001:Asia/Hovd: +West Asia Standard Time:AQ:Antarctica/Mawson: +West Asia Standard Time:KZ:Asia/Oral: +West Asia Standard Time:MV:Indian/Maldives: +West Asia Standard Time:TF:Indian/Kerguelen: +West Asia Standard Time:TJ:Asia/Dushanbe: +West Asia Standard Time:TM:Asia/Ashgabat: +West Asia Standard Time:UZ:Asia/Tashkent: +West Asia Standard Time:ZZ:Etc/GMT-5: +West Asia Standard Time:001:Asia/Tashkent: +West Bank Standard Time:PS:Asia/Hebron: +West Bank Standard Time:001:Asia/Hebron: +West Pacific Standard Time:AQ:Antarctica/DumontDUrville: +West Pacific Standard Time:FM:Pacific/Truk: +West Pacific Standard Time:GU:Pacific/Guam: +West Pacific Standard Time:MP:Pacific/Saipan: +West Pacific Standard Time:PG:Pacific/Port_Moresby: +West Pacific Standard Time:ZZ:Etc/GMT-10: +West Pacific Standard Time:001:Pacific/Port_Moresby: +Yakutsk Standard Time:RU:Asia/Yakutsk: +Yakutsk Standard Time:001:Asia/Yakutsk: +Yukon Standard Time:CA:America/Whitehorse: +Yukon Standard Time:001:America/Whitehorse: diff --git a/inst/stics/V11.0.0/bin/jre17/release b/inst/stics/V11.0.0/bin/jre17/release new file mode 100644 index 0000000..f2b393c --- /dev/null +++ b/inst/stics/V11.0.0/bin/jre17/release @@ -0,0 +1,2 @@ +JAVA_VERSION="17.0.8" +MODULES="java.base java.compiler java.datatransfer java.xml java.prefs java.desktop java.instrument java.logging java.management java.security.sasl java.naming java.rmi java.management.rmi java.net.http java.scripting java.security.jgss java.transaction.xa java.sql java.sql.rowset java.xml.crypto java.se java.smartcardio" diff --git a/inst/stics/V11.0.0/bin/stics_modulo b/inst/stics/V11.0.0/bin/stics_modulo new file mode 100755 index 0000000..112c04a Binary files /dev/null and b/inst/stics/V11.0.0/bin/stics_modulo differ diff --git a/inst/stics/V11.0.0/bin/stics_modulo.exe b/inst/stics/V11.0.0/bin/stics_modulo.exe new file mode 100644 index 0000000..7c089c1 Binary files /dev/null and b/inst/stics/V11.0.0/bin/stics_modulo.exe differ diff --git a/inst/stics/V11.0.0/config/inputs.csv b/inst/stics/V11.0.0/config/inputs.csv new file mode 100644 index 0000000..610675a --- /dev/null +++ b/inst/stics/V11.0.0/config/inputs.csv @@ -0,0 +1,741 @@ +Name;Definition;Unit;File;dim;type;min;max;codeoptimisation;variete +aangst;coefficient of the Angstrom relationship for extraterrestrial radiation;SD;STATION;1;real;0;0.9;1;0 +abscission;fraction of senescent leaves falling to the soil;SD;PARPLT;1;real;0;1;1;0 +aclim;climatic component to calculate actual soil evaporation (Brisson & Perrier, 1991);mm;STATION;1;real;4;25;1;0 +adens;Interplant competition parameter;SD;PARPLT;1;real;-2;0;1;1 +adfol;parameter determining the leaf density evolution within the chosen shape;m-1;PARPLT;1;real;-10;10;1;0 +adil;parameter of the critical dilution curve [Nplante]=adil MS^(-bdil);% ;PARPLT;1;real;1;7;1;0 +adilmax;parameter of the maximum dilution curve [Nplante]=adilmax MS^(-bdilmax);% ;PARPLT;1;real;3;10;1;0 +afpf;parameter of the logistic function defining sink strength of fruits (indeterminate growth) : relative fruit age at which growth is maximal;SD;PARPLT;1;real;0.01;1;1;0 +afruitpot;maximal number of set fruits per inflorescence and per degree day (indeterminate growth);fruits.inflorescence-1.degree_d-1;PARPLT;1;real;0.5;20;1;1 +ahres;parameter of organic residues humification: hres=1-ahres*CsurNres/(bhres+CsurNres);SD;PARAM;21;real;0;100;1;0 +akres;parameter of organic residues decomposition: kres=akres+bkres/CsurNres;d-1;PARAM;21;real;-0.2;1;1;0 +aks;parameter of calculation of the energetic loss between the inside and the outside of a greenhouse ;W.m-2.K-1;STATION;1;real;0.01;100;1;0 +albedo;albedo of the bare dry soil;SD;PARSOL;1;real;0.05;0.6;1;0 +albedomulchplastique;albedo of plastic cover;SD;PARTEC;1;real;0.05;0.8;1;0 +albedomulchresidus;albedo of plant mulch;SD;PARAM;21;real;0.05;0.8;1;0 +albveg;albedo of the vegetation;SD;STATION;1;real;0.05;0.3;1;0 +allocfrmax;maximal daily allocation to fruits;SD;PARPLT;1;real;0.05;1;1;0 +alloperirac;allocation rate of the seed reserves (perisperm) to the rootlet growth;SD;PARPLT;1;real;0.05;1;1;0 +alphaCO2;coefficient accounting for the modification of radiation use efficiency in case of atmospheric CO2 increase;SD;PARPLT;1;real;1;2;1;0 +alphapH;maximal soil pH variation per unit of inorganic N added with slurry;kg-1.ha;PARAM;1;real;0.001;0.02;1;0 +alphaphot;parameter of photoperiodic effect on leaf lifespan;SD;PARPLT;1;real;0;1000;1;0 +alphapt;parameter of Priestley-Taylor formula;SD;STATION;1;real;1;2;1;0 +altinversion;altitude of inversion of the thermal gradient;m;STATION;1;real;0;2000;1;0 +altisimul;altitude of simulated site;m;STATION;1;real;0;2000;1;0 +altistation;altitude of the input metorological station ;m;STATION;1;real;0;2000;1;0 +ampfroid;semi thermal amplitude for vernalising effect;degree_C;PARPLT;1;real;1;30;1;0 +anitcoupe;amount of mineral N added by fertiliser application at each cut of a forage crop;kg.ha-1;PARTEC;20;real;0;400;1;0 +argi;clay content after decarbonation;%;PARSOL;1;real;0;60;1;0 +awb;parameter determining C/N ratio of biomass during organic residues decomposition: CsurNbio=awb+bwb/CsurNres;g.g-1;PARAM;21;real;0;100;1;0 +bangst;coefficient of the Angstrom s relationship for extraterrestrial radiation;SD;STATION;1;real;0;1;1;0 +bdens;minimal plant density above which interplant competition starts;m-2;PARPLT;1;real;1;200;1;1 +bdil;parameter of the critical dilution curve [Nplante]=adil MS^(-bdil);SD;PARPLT;1;real;0.01;0.8;1;0 +bdilmax;parameter of the maximum dilution curve [Nplante]=adilmax MS^(-bdilmax);SD;PARPLT;1;real;0.01;0.8;1;0 +belong;parameter of the curve of coleoptile elongation;degree_d-1;PARPLT;1;real;0.005;0.04;1;0 +beta;parameter of increase of maximal transpiration when a water stress occurs ;SD;PARAM;1;real;1;2;1;0 +bformnappe;coefficient for the water table shape (artificially drained soil);SD;PARAM;1;real;0;1;1;0 +bfpf;parameter of the logistic curve defining sink strength of fruits (indeterminate growth): maximum growth rate relative to maximum fruit weight;SD;PARPLT;1;real;0;30;1;0 +bhres;parameter of organic residues humification: hres=1-ahres*CsurNres/(bhres+CsurNres);g.g-1;PARAM;21;real;-5;2000;1;0 +biorognem;minimal crop biomass removed when topping (automatic calculation);t.ha-1;PARTEC;1;real;0;10;1;0 +bkres;potential rate of decomposition of organic residues: kres=akres+bkres/CsurNres;g.g-1;PARAM;21;real;-2;2;1;0 +bks;parameter of calculation of the energetic lost between the inside and the outside of a greenhouse ;W.m-2.K-1;STATION;1;real;0;100;1;0 +bwb;parameter determining C/N ratio of biomass during organic residues decomposition: CsurNbio=awb+bwb/CsurNres;g.g-1;PARAM;21;real;-500;0;1;0 +cadencerec;number of days between two harvests;d;PARTEC;1;integer;1;30;0;0 +cailloux;volumetric content of pebbles per soil layer;%;PARSOL;5;real;0;100;1;0 +calc;total carbonate content;%;PARSOL;1;real;0;100;1;0 +capiljour;capillary rise upward water flux;mm.d-1;PARSOL;1;real;0.1;20;1;0 +celong;parameter of the plantlet elongation curve;SD;PARPLT;1;real;1;10;1;0 +cfes;parameter defining the soil contribution to evaporation versus depth ;SD;PARSOL;1;real;0.5;4;1;0 +cfpf;parameter of the first potential growth phase of fruit, corresponding to an exponential type function describing the cell division phase;SD;PARPLT;1;real;0.1;100;1;0 +cgrain;slope of the relationship between grain number and growth rate ;t-1.m2.d;PARPLT;1;real;100;5000;1;0 +cgrainv0;fraction of the maximal number of grains when growth rate is zero;SD;PARPLT;1;real;0;1;1;0 +cielclair;fraction of sunny hours allowing the inversion of thermal gradient with altitude;SD;STATION;1;real;0;1;1;0 +cmax_pdenit;Soil organic carbon concentration above which denitrification potential is constant and maximum;g.kg-1;PARAM;1;real;3;40;1;0 +cmin_pdenit;Soil organic carbon concentration below which denitrification potential is constant and minimum;g.kg-1;PARAM;1;real;0;3;1;0 +CNgrainrec;minimal N content of grain at harvest ;g.g-1;PARTEC;1;real;0;1;1;0 +CNresmax;maximum value of C/N ratio of organic residue;g.g-1;PARAM;21;real;3;300;1;0 +CNresmin;minimum value of C/N ratio of organic residue;g.g-1;PARAM;21;real;3;300;1;0 +codabri;option to activate cropping under shelter: 1 = no, 2 = yes;code 1/2;PARTEC;1;integer;1;2;0;0 +codadret;option to calculate mountain climate taking into account the orientation: 1 = south, 2 = north;code 1/2;STATION;1;integer;1;2;0;0 +codaltitude;option to activate the calculation of the climate in altitude: 1 = no, 2 = yes;code 1/2;STATION;1;integer;1;2;0;0 +codazofruit;option to activate the direct effect of N plant status on the fruit/grain number: 1 = no, 2 = yes;code 1/2;PARPLT;1;integer;1;2;0;0 +codazorac;option to activate the effect of N stress on root partitioning within the soil profile: 1 = yes, 2 = no;code 1/2;PARPLT;1;integer;1;2;0;0 +codcaleffeuil;option to calculate leaf removal by thinning: 1 = proportion of leaf removed (effeuil), 2 = lai minimal (laieffeuil);code 1/2;PARTEC;1;integer;1;2;0;0 +codcalinflo;option to calculate the inflorescences number: 1 = read in param.par, 2 = calculated at the amf stage;code 1/2;PARPLT;1;integer;1;2;0;0 +codcalrogne;option to calculate topping: 1 = forced topping, 2 = automatic calculation;code 1/2;PARTEC;1;integer;1;2;0;0 +codcueille;option to define harvest type: 1 =single harvest (cutting), 2 = multiple harvests (picking);code 1/2;PARTEC;1;integer;1;2;0;0 +code_acti_reserve;option to activate the simulation of Nitrogen and Carbon reserves: 1 = yes, 2 = no;code 1/2;PARPLT;1;integer;1;2;0;0 +code_auto_profres;option to define profres: 1 = profres calculated as proftrav *(1-exp(-resk.(proftrav-resz)), 2 = profres read in tec file;code 1/2;PARTEC;1;integer;1;2;0;0 +code_CsurNsol_dynamic;option to activate the dynamic calculation of CsurNsol: 1 = yes, 2 = no;code 1/2;PARAMV6;1;integer;1;2;0;0 +code_diff_root;option to activate the simulation of 2 root classes: 1 =yes, 2 = no;code 1/2;PARPLT;1;integer;1;2;0;0 +code_hautfauche_dyn;option to activate dynamic calculation of residual LAI, biomass and N content after cutting: 1 = yes, 2 = no;code 1/2;PARTEC;1;integer;1;2;0;0 +code_hourly_wfps_denit;option to activate hourly WFPS calculation for denitrification: 1 = yes, 2 = no;code 1/2;PARAM;1;integer;1;2;0;0 +code_hourly_wfps_nit;option to activate hourly WFPS calculation for nitrification: 1 = yes, 2 = no;code 1/2;PARAM;1;integer;1;2;0;0 +code_humirac;option to calculate the root growth reduction factor due to soil water content, 0: no effect of soil water content, 1: using a discontinuous function with a threshold at hminf, 2: using a linear function between hminf and hccf;SD;PARAMV6;1;integer;0;2;0;0 +code_pdenit;option to define the denitrification potential: 1 = read in soil parameter, 2 = calculated from soil organic carbon concentration;code 1/2;PARAM;1;integer;1;2;0;0 +code_ratiodenit;option to define the N2O/(N2+N2O) ratio of denitrification: 1 = constant, 2 = variable;code 1/2;PARAM;1;integer;1;2;0;0 +code_rationit;option to define the N2O/(N2+N2O) ratio of nitrification: 1 = constant, 2 = variable;code 1/2;PARAM;1;integer;1;2;0;0 +code_rootdeposition;code to simulate N demand and allocation to roots and their turn-over during crop growth cycle: 1 = daily deposition, 2 = deposition only at harvest;code 1/2;PARPLT;1;integer;1;2;0;0 +code_shape;code for plant height computation using LAI (1, default), or using phasic development (2) ;code 1/2;PARPLT;1;integer;1;2;0;0 +code_stress_root;option to activate the preferential allocation of biomass to roots in case of water or N stress: 1 = yes, 2 = no;code 1/2;PARPLT;1;integer;1;2;0;0 +code_strip;option to activate the computation of light interception for an intercrop: 1 = yes, 2 = no;code 1/2;PARTEC;1;integer;1;100;0;0 +code_tnit;option to define the temperature function for nitrification: 1 = piecewise linear, 2 = gaussian;code 1/2;PARAM;1;integer;1;2;0;0 +code_vnit;option to define the nitrification rate dependence on NH4: 1 = first order, 2 = Michaelis-Menten;code 1/2;PARAM;1;integer;1;2;0;0 +code_WangEngel;option to activate the effect of temperature on development units for emergence according to Wang et Engel (1998): 1 = yes, 2 = no;code 1/2;PARPLT;1;integer;1;2;0;0 +codeactimulch;option to activate the mulch effect at soil surface: 1 = yes, 2 = no;code 1/2;PARAM;1;integer;1;2;0;0 +codeaumin;option to activate the harvest according to grain/fruit water content: 1 = water content > minimum threshold, 2 = water content < maximum threshold;code 1/2;PARTEC;1;integer;1;2;0;0 +codebeso;option to calculate water requirements: 1 = k.ETP approach, 2= resistive method;code 1/2;PARPLT;1;integer;1;2;0;0 +codebfroid;option to calculate chilling requirements: 1 = no need, 2 = vernalising days, 3 = development stage;code 1/2/3;PARPLT;1;integer;1;3;0;0 +codecailloux;option to take into account pebbles in the water and N balances: 1 = yes, 2 = no;code 1/2;PARSOL;1;integer;1;2;0;0 +codecalferti;option to activate the automatic calculation of fertilisation rate: 1 = yes, 2 = no;code 1/2;PARAMV6;1;integer;1;2;0;0 +codecalirrig;option to activate the automatic calculation of irrigation requirements: 1 = yes, 2 = no;code 1/2;PARTEC;1;integer;1;2;0;0 +codecaltemp;option to activate the use of crop temperature for phasic development calculation: 1 = empirical relation, 2 = energy balance;code 1/2;STATION;1;integer;1;2;0;0 +codeclaircie;option to simulate fruit removal: 1 = no, 2 = yes (for smallest fruits) ;code 1/2;PARTEC;1;integer;1;2;0;0 +codeclichange;option to activate climate change: 1 = no, 2 =yes;code 1/2;STATION;1;integer;1;2;0;0 +codedate_irrigauto;option to activate the beginning and the ending dates in case of automatic irrigation: 1 = dates, 2= crop stages, 3 = nothing;code 1/2/3;PARTEC;1;integer;1;3;0;0 +codedateappH2O;option to calculate irrigation dates according to sum of temperatures: 1 = yes, 2 = no;code 1/2;PARTEC;1;integer;1;2;0;0 +codedateappN;option to calculate mineral fertilizer application dates according to sum of temperatures: 1 = yes, 2 = no;code 1/2;PARTEC;1;integer;1;2;0;0 +codedecirecolte;option to activate moisture and frost effects on harvest decision: 1 = yes, 2 = no;code 1/2;PARTEC;1;integer;1;2;0;0 +codedecisemis;option to activate the moisture effect on sowing decision: 1 = yes, 2 = no;code 1/2;PARTEC;1;integer;1;2;0;0 +codedenit;option to activate the calculation of denitrification model: 1 = yes, 2 = no;code 1/2;PARSOL;1;integer;1;2;0;0 +codedisrac;option to define root profile in soil: 1 = standard root distribution, 2 = root emission proportional to root biomass;code 1/2;PARPLT;1;integer;1;2;0;0 +codedormance;option to calculate dormancy and chilling requirements: 1 = forcing, 2 = Richardson, 3 = Bidabe;code 1/2/3;PARPLT;1;integer;1;3;0;0 +codeDST;option to activate the variations in physical soil conditions due to tillage: 1 = yes, 2 = no;code 1/2;PARTEC;1;integer;1;2;0;0 +codeDSTnbcouche;option to define the number of compacted soil layers: 1 = one layer, 2 = two layers;code 1/2;PARTEC;1;integer;1;2;0;0 +codeDSTtass;option to activate the soil compaction at sowing and harvest: 1 = yes, 2 = no;code 1/2;PARTEC;1;integer;1;2;0;0 +codedyntalle;option to activate the module simulating tillers dynamics: 1 = yes, 2 = no;code 1/2;PARPLT;1;integer;1;2;0;0 +codeetp;option to calculate PET: 1 = forced Penman, 2 = calculated Penman, 3= Shuttleworth & Wallace, 4 = Priestley & Taylor;code 1/2/3/4;STATION;1;integer;1;4;0;0 +codefauche;option to activate cuts of forage crops: 1 = yes, 2 = no;code 1/2;PARTEC;1;integer;1;2;0;0 +codefente;option to activate an additional water compartment for swelling soils: 1 = yes, 2 = no;code 1/2;PARSOL;1;integer;1;2;0;0 +codeffeuil;option to activate plant thinning: 1 = no, 2 = yes;code 1/2;PARTEC;1;integer;1;2;0;0 +codefixpot;option to calculate the maximal symbiotic fixation: 1 = fixed value read in the plant file, 2 = depends on growth rate;code 1/2;PARPLT;1;integer;1;3;0;0 +codefracappN;option to activate split applications of N fertiliser: 1 = absolute value, 2 = fraction of total N application;code 1/2;PARTEC;1;integer;1;2;0;0 +codefrmur;option to define the maturity status of the fruits in the variable CHARGEFRUIT: 1 = including ripe fruits (last box N), 2 = excluding ripe fruits (first N-1 boxes);code 1/2;PARAM;1;integer;1;2;0;0 +codefxn;option to define the effect of soil nitrate on N fixation: 1 = no effect, 2 = effect of nitrate amount, 3 = effect of nitrate concentration;code 1/2/3;PARAM;1;integer;1;3;0;0 +codegdh;option to define the time step used for calculating development units: 1 = hourly, 2 = daily;code 1/2;PARPLT;1;integer;1;2;0;0 +codegdhdeb;option to define the time step used for calculating bud break date: 1 = daily, 2 = hourly growing degrees;code 1/2;PARPLT;1;integer;1;2;0;0 +codegermin;option to simulate germination: 1 = germination phase, 2 = immediate germination;code 1/2;PARPLT;1;integer;1;2;0;0 +codeh2oact;option to activate water stress effect on crop growth: 1 = yes, 2 = no;code 1/2;PARAM;1;integer;1;2;0;0 +codehypo;option to simulate plant emergency: 1 = phase of hypocotyl growth (sown crops), 2 = plantation of plantlets;code 1/2;PARPLT;1;integer;1;2;0;0 +codeindetermin;option to simulate the type of leaf growth and fruit growth: 1 = determinate, 2 = undeterminate;code 1/2;PARPLT;1;integer;1;2;0;0 +codeinitprec;option to activate reset of initial conditions in case of chained simulations: 1 = yes, 2 = no;code 1/2;PARAM;1;integer;1;2;0;0 +codeINN;option to compute NNI: 1 = cumulative NNI, 2 = instantaneous NNI;code 1/2;PARPLT;1;integer;1;2;0;0 +codeinnact;option to activate N stress effect on root length growth: 1 = yes, 2 = no;code 1/2;PARAM;1;integer;1;2;0;0 +codeintercept;option to simulate rainfall interception by leaves: 1 = yes, 2 = no;code 1/2;PARPLT;1;integer;1;2;0;0 +codeir;option to calculate the ratio grain weight/total biomass: 1 = proportional to time, 2 = proportional to thermal time;code 1/2;PARPLT;1;integer;1;2;0;0 +codejourdes;option to simulate perennial crops destruction;code 1/2;PARTEC;1;integer;1;2;0;0 +codelaitr;option to calculate the intercepted radiation according to: 1 = LAI, 2 = soil cover;code 1/2;PARPLT;1;integer;1;2;0;0 +codelegume;option to define if the crop is a legume fixing N: 1 = yes, 2 = no;code 1/2;PARPLT;1;integer;1;2;0;0 +codemacropor;option to activate calculation of water flux in soil macroporosity: 1 = yes, 2 = no;code 1/2;PARSOL;1;integer;1;2;0;0 +codemicheur;option to calculate hourly microclimatic outputs (output file humidite.sti): 1 = yes, 2 = no;code 1/2;PARAM;1;integer;1;2;0;0 +codeminopt;option to simulate a bare soil with a constant water content: 1 = yes, 2 = no ;code 1/2;PARAM;1;integer;1;2;0;0 +codemodfauche;option to define the cutting mode: 1 = automatic calculation depending on phenologic and trophic state, 2 = pre-established calendar in days, 3 = pre-established calendar in degree-days;code 1/2/3;PARTEC;1;integer;1;3;0;0 +codemodlsnow;option to calculate snow variables: 1 = unused, 2 = unused, 3 = Snow model 3;code 1/2/3;STATION;1;integer;1;3;0;0 +codemonocot;option to define the type of plant: 1 = monocot, 2 =dicot;code 1/2;PARPLT;1;integer;1;2;0;0 +codemontaison;option to stop the reserve limitation after stem elongation in grassland: 1 = yes, 2 = no;code 1/2;PARPLT;1;integer;1;2;0;0 +codemortalracine;option to calculate the mass of dead roots after a cut: 1 = based on masec, 2 = based on masectot;code 1/2;PARPLT;1;integer;1;2;0;0 +codemsfinal;option to define if the biomass and yield are conserved after harvest: 1 = yes, 2 = no (values set at 0);code 1/2;PARAM;1;integer;1;2;0;0 +codenitrif;option to activate the nitrification model: 1 = yes, 2 = no;code 1/2;PARSOL;1;integer;1;2;0;0 +codeNmindec;option to activate the limitation of residues decomposition due lack of mineral N: 1 = yes, 2 = no;code 1/2;PARAMV6;1;integer;1;2;0;0 +codeoutscient;option to write outputs files with scientific format: 1 = yes, 2 = no;code 1/2;PARAM;1;integer;1;2;0;0 +codepaillage;option to define soil cover: 1 = no cover, 2 = plastic cover partly covering the soil ;code 1/2;PARTEC;1;integer;1;2;0;0 +codepalissage;option to define if the plant is fixed onto a vertical support: 1 = no, 2 =yes;code 1/2;PARTEC;1;integer;1;3;0;0 +codeperenne;option to define the crop perenniality: 1 = annual crop, 2 = perennial crop;code 1/2;PARPLT;1;integer;1;2;0;0 +codephot;option to define plant photoperiodism: 1 = yes, 2 = no;code1/2;PARPLT;1;integer;1;2;0;0 +codephot_part;simulation of the effect of decreasing photoperiod on biomass allocation : 1 = yes, 2 = no;code1/2;PARPLT;1;integer;1;2;0;0 +codeplante;option to define the coding name of the plant (3 characters);SD;PARPLT;1;character;0;0;0;0 +codeplisoleN;option to define N requirements at the beginning of the cycle: 1 = dense plant population, 2 = isolated plants;code 1/2;PARPLT;1;integer;1;2;0;0 +codepluiepoquet;option to replace rainfall by irrigation at poquet depth in the case of poquet sowing: 1 = yes, 2 = no ;code 1/2;PARAMV6;1;integer;1;2;0;0 +codeprofmes;option of soil depth for calculating water and N stocks (1 = profmes, 2 = soil depth);code 1/2;PARAM;1;integer;1;2;0;0 +coderacine;option to define the calculation of root growth and extension: 1 = standard profile, 2 = root length density;code 1/2;PARPLT;1;integer;1;2;0;0 +coderecolteassoc;option to harvest intercrop species simultaneously, at the physiological maturity date of the earliest one: 1 = no, 2 = yes;code 1/2;PARTEC;1;integer;1;2;0;0 +coderemontcap;option to activate capillary rise: 1 = yes, 2 = no;code 1/2;PARSOL;1;integer;1;2;0;0 +coderes;residue type: 1=mature crop, 2=cover crop, 3=Manure, 4=Green compost, 5=Sewage sludge, 6=Vinasse, 7=Horn, 8=vineyard prunings, 9=pig slurry, 10=rhizomes;code 1 to 10;PARTEC;10;integer;1;21;0;0 +coderes_pature;residue type used to simulate bovine feces: 1-10;code 1 to 10;PARAMV6;1;integer;1;10;0;0 +coderetflo;option to activate the effect of water stress on development before the stage DRP (filling of harvested organs): 1 = yes, 2 = no;code 1/2;PARPLT;1;integer;1;2;0;0 +codernet;option to calculate net radiation: 1 = Brunt method, 2 = Cellier method;code 1/2;STATION;1;integer;1;2;0;0 +codesensibilite;option to activate the sensitivity analysis version of the model: 1 = yes, 2 = no;code 1/2;PARAM;1;integer;1;2;0;0 +codeseprapport;option to select the column separator in the rapport.sti output file: 1 = space separator, 2 = separator indicated in the file rapport.sti;code 1/2;PARAM;1;integer;1;2;0;0 +codesimul;option to define the type of crop simulation: culture or 0 (LAI calculated by the model), feuille or 1 (LAI forced);SD / code 0/1;USM/USMXML;1;character/integer;0;1;0;0 +codesnow;option to activate the snow module: 1 = yes, 2 = no;code 1/2;PARAM;1;integer;1;2;0;0 +codestade;option to force one or several development stages: 1 = yes, 2 = no;code 1/2;PARTEC;1;integer;1;2;0;0 +codestrphot;option to activate the photoperiodic stress on lifespan (1 = yes, 2 = no);code 1/2;PARPLT;1;integer;1;2;0;0 +codesuite;option to simulate several successive USM: 0 = no, 1 = yes;code 0/1;USM;1;integer;0;1;0;0 +codeSWDRH;optin to calculate the duration of surface wetness: 1=yes , 2 = no;code 1/2;PARAMV6;1;integer;1;2;0;0 +codesymbiose;option to calculate symbiotic N fixation: 1 = based on critical dilution curve, 2 = specific calculation of N fixation;code 1/2;PARAM;1;integer;1;2;0;0 +codetaille;option to activate pruning: 1 = no, 2 = yes;code 1/2;PARTEC;1;integer;1;2;0;0 +codetemp;option to calculate thermal time for plant growth: 1 = based on air temperature, 2 = based on crop temperature;code 1/2;PARPLT;1;integer;1;2;0;0 +codetempfauche;option to define the reference temperature to compute cutting sum of temperatures: 1 = upvt, 2 = udevair;code 1/2;PARTEC;1;integer;1;2;0;0 +codetemprac;option to calculate thermal time for root growth: 1 = crop temperature, 2 = soil temperature;code 1/2;PARPLT;1;integer;1;2;0;0 +codetesthumN;option to define automatic N fertilisation calculation: 1 = based on rainfall, 2 = based on soil water content;code 1/2;PARAMV6;1;integer;1;2;0;0 +codetradtec;option to activate the effect of crop structure on radiation transfer: 1 =yes, 2 = no;code 1/2;PARTEC;1;integer;1;2;0;0 +codetranspitalle;option to choose the ratio used to calculate tiller mortality: 1 = et/etm, 2 = epc2/eopC;code 1/2;PARPLT;1;integer;1;2;0;0 +codetransrad;option to calculate radiation interception: 1 = Beer law, 2 = radiative transfer;code 1/2;PARPLT;1;integer;1;2;0;0 +codetremp;option to activate heat effect on grain filling: 1 = yes, 2 = no;code 1/2;PARPLT;1;integer;1;2;0;0 +codetrosee;option to calculate hourly dew temperature : 1 = linear interpolation, 2 = sinusoidal interpolation (Debele Bekele et al, 2007);code 1/2;PARAMV6;1;integer;1;2;0;0 +codetycailloux;code for pebble type;code 1 to 10;PARAM;1;integer;1;10;0;0 +codetypeng;code for fertiliser type;code 1 to 8;PARAM;1;integer;1;8;0;0 +codetypres;code for organic residue;code 1 to 10;PARAM;1;integer;1;21;0;0 +codevar;code for cultivar name;SD;PARPLT;1;character;0;1;0;0 +codgelflo;option to activate the frost effect at anthesis: 1 = no, 2 = yes;code 1/2;PARPLT;1;integer;1;2;0;0 +codgeljuv;option to activate the frost effect on LAI at the juvenile stage: 1 = no, 2 = yes;code 1/2;PARPLT;1;integer;1;2;0;0 +codgellev;option to activate the frost effect on plantlet growth: 1 = no, 2 = yes;code 1/2;PARPLT;1;integer;1;2;0;0 +codgelveg;option to activate the frost effect on LAI at adult stage: 1 = no, 2 = yes;code 1/2;PARPLT;1;integer;1;2;0;0 +codhauteff;option to define the height of leaf removal (if the thinning option is activated): 1 = bottom of the canopy, 2 = top of the canopy;code 1/2;PARTEC;1;integer;1;2;0;0 +codhnappe;option to calculate the watertable level : 1 = mean height, 2 = height at the distance distdrain;code 1/2;PARAM;1;integer;1;2;0;0 +codlainet;option to calculate the LAI: 1 = net LAI, 2 = difference between gross LAI and senescent LAI;code 1/2;PARPLT;1;integer;1;2;0;0 +codlocferti;option to define localized fertilisation: 1 = at soil surface, 2 = deeper in the soil;code 1/2;PARTEC;1;integer;1;2;0;0 +codlocirrig;option to define localized irrigation: 1= above the foliage, 2= below the foliage above the soil, 3 = in the soil;code 1/2/3;PARTEC;1;integer;1;3;0;0 +codoptim;option to activate the optimisation code: 0 = no, 1 = optimisation for the main crop, 2 = optimisation for the associated crop;code 0/1/2;USM;1;integer;0;2;0;0 +codrainage;option to simulate artificial drainage: 1 = yes, 2 = no;code 1/2;PARSOL;1;integer;1;2;0;0 +codrecolte;option to define harvest strategy: 1 = at physiological maturity, 2 = according to water content, 3 = according to sugar content, 4 = according to nitrogen content, 5 = according to oil content;code 1 to 5;PARTEC;1;integer;1;5;0;0 +codrognage;option to activate foliage control by trimming: 1 = no, 2 = yes;code 1/2;PARTEC;1;integer;1;2;0;0 +codtrophrac;option to activate a trophic effect on root length growth: 1 = permanent link, 2 = link by thresholds, 3 = no effect;code 1/2/3;PARPLT;1;integer;1;3;0;0 +coef_calcul_doseN;crop N concentration below which there is no N return to the soil through animal urine;g.kg-1;PARAMV6;1;real;1;30;1;0 +coef_calcul_qres;crop N concentration used to calculate animal feces from animal grass dry matter intake;g.kg-1;PARAMV6;1;real;1;10;1;0 +coefamflax;multiplier coefficient applied to the thermal time requirement between stages AMF and LAX;SD;PARPLT;1;real;1;2;1;0 +coefb;parameter defining the radiation saturation effect on biomass conversion efficiency;g.MJ-1;PARAM;1;real;0.05;0.15;1;0 +coefdevil;multiplier coefficient of the outdoor radiation to calculate PET inside of a greenhouse;SD;STATION;1;real;0.3;1.2;1;0 +coefdrpmat;multiplier coefficient applied to the thermal time requirement between stages DRP and MAT;SD;PARPLT;1;real;1;2;1;0 +coefflodrp;multiplier coefficient applied to the thermal time requirement between stages FLO and DRP;SD;PARPLT;1;real;1;2;1;0 +coeflaxsen;multiplier coefficient applied to the thermal time requirement between stages LAX and SEN;SD;PARPLT;1;real;1;2;1;0 +coeflevamf;multiplier coefficient applied to the thermal time requirement between stages LEV and AMF;SD;PARPLT;1;real;1;2;1;0 +coeflevdrp;multiplier coefficient applied to the thermal time requirement between stages LEV and DRP;SD;PARPLT;1;real;1;2;1;0 +coefmshaut;ratio of crop biomass to useful cutting height of crops ;t.ha-1.m-1;PARPLT;1;real;2;50;1;0 +coefracoupe;proportion of roots dying after a cut of a forage crop;SD;PARPLT;1;real;0.001;1;1;0 +coefrnet;coefficient applied to the (outdoor) net radiation to calculate the net radiation under a greenhouse;SD;STATION;1;real;0.001;1;1;0 +coefsenlan;multiplier coefficient applied to the thermal time requirement between stages SEN and LAN;SD;PARPLT;1;real;1;2;1;0 +concirr;concentration of mineral N (NH4+NO3-N) in irrigation water;kg.ha-1 mm-1;PARTEC;1;real;0;0.2;1;0 +concNnodseuil;maximal concentration of mineral N in soil for nodule onset ;kg.ha-1.mm-1;PARPLT;1;real;0;10;1;0 +concNrac0;nitrate-N concentration (if codefxN=3) or nitrate-N amount (if codefxN=2) above which N fixation is totally inhibited;kg.ha-1.mm-1 or kg.ha-1.cm-1;PARPLT;1;real;0;10;1;0 +concNrac100;nitrate-N concentration (if codefxN=3) or nitrate-N amount (if codefxN=2) below which N fixation is maximum;kg.ha-1.mm-1 or kg.ha-1.cm-1;PARPLT;1;real;0;2;1;0 +concrr;concentration of mineral N (NH4+NO3-N) in the rain;kg.ha-1 mm-1;STATION;1;real;0;3;1;0 +concseuil;minimum concentration of NO3-N in soil (unavailable for leaching and for uptake);kg.ha-1 mm-1;PARSOL;1;real;0;0.5;1;0 +contrdamax;maximal reduction factor applied to root growth rate due to soil strengthness (high bulk density);SD;PARPLT;1;real;0;1;1;0 +corecTrosee;temperature to substract to Tmin to estimate dew point temperature (in case of missing air humidity data);degree_C;STATION;1;real;-5;5;1;0 +couvermulchplastique;fraction of soil covered by the plastic mulch ;SD;PARTEC;1;real;0;1;1;0 +Crespc;C content in organic residue (DW);%;PARTEC;11;real;0;100;1;0 +Crespc_pature;C content in animal feces (FW);%;PARAMV6;1;real;0;100;1;0 +CroCo;fraction of organic residue which is decomposable;SD;PARAM;21;real;0;1;1;0 +croirac;elongation rate of the root apex;cm.degree_d-1;PARPLT;1;real;0;0.5;1;1 +CsurNres;C/N ratio of residue;g.g-1;PARTEC;11;real;4;300;1;0 +CsurNsol0;Initial C to N ratio of soil humus;g.g-1;PARSOL;1;real;8;20;1;0 +culturean;number of calendar years involved in the crop cycle (1 = 1 year e.g. for spring crops, 2 = two years, e.g. for winter crops);SD;USM/USMXML;1;integer;1;2;1;0 +cvent;parameter of the climate calculation under shelter;SD;STATION;1;real;0.001;1;1;0 +cwb;minimum ratio C/N of microbial biomass decomposing organic residues;g.g-1;PARAM;21;real;5;60;1;0 +dachisel;bulk density of soil after soil tillage (Chisel);g.cm-3;PARTEC;1;real;0.8;1.7;1;0 +dacohes;bulk density of soil below which root growth is reduced due to a lack of soil cohesion;g.cm-3;PARAM;1;real;0.001;1.4;1;0 +DAF;bulk density of fine earth fraction in each soil layer;g.cm-3;PARSOL;5;real;0.8;2;1;0 +dalabour;bulk density of soil after full inversion tillage (plough);g.cm-3;PARTEC;1;real;0.8;2;1;0 +darecolte;bulk density of soil after harvest;g.cm-3;PARTEC;1;real;0.8;2;1;0 +dasemis;bulk density of soil after sowing;g.cm-3;PARTEC;1;real;0.8;2;1;0 +daseuilbas;bulk density of soil above which root growth is maximal;g.cm-3;PARAM;1;real;1;1.4;1;0 +daseuilhaut;bulk density of soil above which root growth becomes impossible;g.cm-3;PARAM;1;real;1.4;2.5;1;0 +datedeb_irrigauto;starting date of automatic irrigations;julian_d;PARTEC;1;integer;1;731;0;0 +datedebut;starting date of simulation;julian_d;USM/USMXML;1;integer;0;730;0;0 +datefin;ending date of simulation;julian_d;USM/USMXML;1;integer;0;730;0;0 +datefin_irrigauto;ending date of automatic irrigations;julian_d;PARTEC;1;integer;1;731;0;0 +debsenrac;thermal time units defining the beginning of root senescence (root life time);degree_d;PARPLT;1;real;0;2000;1;0 +deneng;maximal fraction of the mineral fertilizer that can be denitrified (used if codedenit is not activated);SD;PARAM;8;real;0;1;1;0 +densinitial;initial root density in each of the five soil layers;cm.cm-3;INIT;5;real;0;10;1;0 +densitesem;plant sowing density ;plant.m-2;PARTEC;1;real;0.05;2000;1;0 +deshydbase;rate of change of water content in fruits (FW) vs thermal time (>0 or <0);g.g-1.degree_d-1;PARPLT;1;real;-0.02;0.02;1;1 +dfolbas;minimal foliar density within the considered shape;m2.m-3;PARPLT;1;real;1;10;1;0 +dfolhaut;maximal foliar density within the considered shape;m2.m-3;PARPLT;1;real;1;10;1;0 +dfpf;parameter of the first potential growth phase of fruit, corresponding to an exponential type function describing the cell division phase;SD;PARPLT;1;real;0.01;5;1;0 +difN;diffusion coefficient of nitrate in soil at field capacity;cm2.d-1;PARAM;1;real;0.01;0.1;1;0 +diftherm;soil thermal diffusivity;cm2.s-1;PARAM;1;real;0.001;0.01;1;0 +distdrain;distance between mole drains;cm;PARAM;1;real;0;25000;1;0 +DKmax;difference between the maximum and the minimum melting rates for snow;mm.degree_C-1.d-1;STATION;1;real;1;2;1;0 +dlaimax;maximum rate of net daily increase of LAI;m2.degree_d-1;PARPLT;1;real;0.000005;0.5;1;1 +dlaimaxbrut;maximum rate of gross daily increase of LAI;m2.degree_d-1;PARPLT;1;real;0.000005;0.5;1;1 +dlaimin;accelerating parameter for the lai growth rate;SD;PARPLT;1;real;0;1;1;0 +dltamsmaxsen;growth rate above which there is no more photoperiodic effect on senescence;t.ha-1.d-1;PARPLT;1;real;0.01;0.2;1;0 +dltamsminsen;growth rate below which the photoperiodic effect on senescence is maximal;t.ha-1.d-1;PARPLT;1;real;0.01;0.2;1;0 +doseI;daily amount of irrigation water;mm.d-1;PARTEC;30;real;0;500;1;0 +doseirrigmin;minimal amount of daily irrigation;mm.d-1;PARTEC;1;real;0;500;1;0 +doseN;daily amount of N added through fertilizers;kg.ha-1.d-1;PARTEC;20;real;0;500;1;0 +dosimx;maximum amount of irrigation water applied daily (mode automatic irrigation);mm.d-1;PARTEC;1;real;10;500;1;0 +dosimxN;maximum amount of fertiliser N applied daily (mode automatic fertilisation);kg.ha-1.d-1;PARAMV6;1;real;5;500;1;0 +dpHvolmax;maximal pH increase following the application of slurry;SD;PARAM;1;real;0;3;1;0 +draclong;maximum rate of root length production per plant;cm.plant-1.degree_d-1;PARPLT;1;real;1;1000;1;0 +dureefruit;duration of the fruit between onset and physiological maturity;degree_d;PARPLT;1;real;10;2000;1;1 +durvieF;maximal lifespan of an adult leaf expressed in summation of Q10=2 (2**(T-Tbase));SD;PARPLT;1;real;10;500;1;1 +durviesupmax;relative additional lifespan due to N excess in plant (INN > 1);SD;PARPLT;1;real;0;1;1;0 +E;snow compaction parameter;mm.mm-1.d-1;STATION;1;real;0;0.05;1;0 +eau_mini_decisemis;minimum amount of rainfall required to start sowing (when codedecisemis is activated);mm;PARTEC;1;integer;0;40;0;0 +eaures;water content of organic residue (FW);%;PARTEC;11;real;0;99;1;0 +eaures_pature;water content of animal feces deposited on soil during grazing (FW);%;PARAMV6;1;real;0;100;1;0 +ecartdrain;distance between mole drains;cm;PARSOL;1;real;100;5000;1;0 +efcroijuv;maximum radiation use efficiency during the juvenile phase (LEV-AMF);g.MJ-1;PARPLT;1;real;1;7;1;0 +efcroirepro;maximum radiation use efficiency during the grain filling phase (DRP-MAT);g.MJ-1;PARPLT;1;real;1;10;1;0 +efcroiveg;maximum radiation use efficiency during the vegetative stage (AMF-DRP);g.MJ-1;PARPLT;1;real;1;10;1;0 +effeuil;fraction of leaf removed by plant thinning;SD;PARTEC;1;real;0;1;1;0 +effirr;irrigation efficiency;SD;PARTEC;1;real;0.2;1;1;0 +efremobil;Efficiency of use of carbohydrates in storage organs of perennials;SD;PARPLT;1;real;0;1;1;0 +elmax;maximum elongation of the coleoptile in darkness condition;cm;PARPLT;1;real;2;40;1;0 +elongation;plant elongation factor for the shaded component of a dominated plant: more elongation when > 1.0 compared to reference in sole crop;SD;PARPLT;1;real;1;2;1;0 +engamm;fraction of ammonium in the N fertilizer;SD;PARAM;8;real;0;1;1;0 +engrais;fertilizer type (1=ammonium nitrate, 2=UAN solution, 3=urea, 4=anhydrous ammonia, 5=ammonium sulfate, 6=ammonium phosphate, 7=calcium nitrate, 8= fixed efficiency fertiliser);SD;PARTEC;10;integer;1;8;0;0 +engrais_pature;fertilizer type used to mimic urine excretion (1=ammonium nitrate, 2=UAN solution, 3=urea, 4=anhydrous ammonia, 5=ammonium sulfate, 6=ammonium phosphate, 7=calcium nitrate, 8= fixed efficiency fertiliser);SD;PARAMV6;1;integer;1;8;0;0 +engraiscoupe;fertilizer type (1=ammonium nitrate, 2=UAN solution, 3=urea, 4=anhydrous ammonia, 5=ammonium sulfate, 6=ammonium phosphate, 7=calcium nitrate, 8= fixed efficiency fertiliser);SD;PARTEC;10;integer;1;8;0;0 +envfruit;fraction of envelop in grainmaxi;SD;PARPLT;1;real;0;0.5;1;0 +epc;thickness of each soil layer;cm ;PARSOL;5;integer;1;1000;1;0 +epd;thickness of mixing cells in each soil layer ( = 2 * dispersion length);cm;PARSOL;5;integer;1;50;0;0 +extin;extinction coefficient of photosynthetic active radiation in the canopy;SD;PARPLT;1;real;0.1;1.5;1;1 +fclim1;name of the first climate file;SD;USM/USMXML;1;character;0;0;0;0 +fclim2;name of the second climate file;SD;USM/USMXML;1;character;0;0;0;0 +fhminsat;relative soil mineralisation rate at water saturation;SD;PARAM;1;real;0;1;1;0 +finert;initial fraction of inert pool in the soil organic pool (= stable SON/ total SON);SD;PARSOL;1;real;0;1;1;0 +finit;name of the initialisation file ;SD;USM/USMXML;1;character;0;0;0;0 +fixmax;maximal N symbiotic fixation rate;kg.ha-1.d-1;PARPLT;1;real;2;12;1;0 +fixmaxgr;maximal N symbiotic fixation rate per unit of grain growth rate;kg.t-1;PARPLT;1;real;0;50;1;0 +fixmaxveg;maximal N symbiotic fixation rate per unit of vegetative growth rate;kg.t-1;PARPLT;1;real;0;50;1;0 +flagecriture;option for writing the output files (1 = mod_history.sti, 2=daily outputs,4= report outputs, 8=balance outputs,16 = profile outputs, 32= debug outputs, 64 = screen outputs) sum them to have several types of outputs;SD;PARAM;1;integer;0;127;0;0 +flai;name of the LAI file;SD;USM/USMXML;1;character;0;0;0;0 +fNCbiomin;minimal value for the ratio N/C of the microbial biomass when N limits decomposition;g.g-1;PARAM;1;real;0.01;0.1;1;0 +fNmindecmin;minimal fraction of mineral N available for residues decomposition (if codeNmindec is activated);SD;PARAMV6;1;real;0;1;1;0 +fnx;maximum fraction of NH4 nitrified each day (first order model);SD;PARAM;1;real;0.01;1;1;0 +fobs;name of the observed file;SD;USM/USMXML;1;character;0;0;0;0 +forme;option to define the shape of leaf density profile: 1 = rectangle, 2 = triangle;code 1/2;PARPLT;1;integer;1;2;0;0 +fplt;name of the plant file;SD;USM/USMXML;1;character;0;0;0;0 +fracN;proportion of fertiliser N applied at each application;%;PARTEC;10;real;5;100;1;0 +fredkN;reduction factor of decomposition rate of organic residues when mineral N is limiting;SD;PARAM;1;real;0.1;1;1;0 +fredlN;reduction factor of decomposition rate of microbial biomass when mineral N is limiting;SD;PARAM;1;real;0.2;1;1;0 +fredNsup;additional reduction factor of residues decomposition rate when mineral N is highly limiting;SD;PARAM;1;real;0;1;1;0 +fstation;name of the weather station file;SD;USM/USMXML;1;character;0;0;0;0 +ftec;name of the technical file;SD;USM/USMXML;1;character;0;0;0;0 +ftemh;parameter (1/2) of the temperature function on humus decomposition rate;degree_K-1;PARAM;1;real;0.05;0.5;1;0 +ftemha;parameter (2/2) of the temperature function on humus decomposition rate;SD;PARAM;1;real;10;50;1;0 +ftemr;parameter (1/2) of the temperature function on decomposition rate of organic residues;degree_K-1;PARAM;1;real;0.05;0.5;1;0 +ftemra;parameter (2/2) of the temperature function on decomposition rate of organic residues;SD;PARAM;1;real;5;30;1;0 +GMIN1;parameter (1/7) of the new mineralization function (Clivot et al, 2017), mineralization rate constant;d-1;PARAM;1;real;0;1;1;0 +GMIN2;parameter (2/7) of the new mineralization function (Clivot et al, 2017), clay content factor;%-1;PARAM;1;real;0;0.1;1;0 +GMIN3;parameter (3/7) of the new mineralization function (Clivot et al, 2017), CaCO3 content factor;%-1;PARAM;1;real;0;0.1;1;0 +GMIN4;parameter (4/7) of the new mineralization function (Clivot et al, 2017), pH factor 1 ;pH-1;PARAM;1;real;0;1;1;0 +GMIN5;parameter (5/7) of the new mineralization function (Clivot et al, 2017), pH factor 2;pH;PARAM;1;real;3;11;1;0 +GMIN6;parameter (6/7) of the new mineralization function (Clivot et al, 2017), C/N soil factor 1;g.g-1;PARAM;1;real;0;1;1;0 +GMIN7;parameter (7/7) of the new mineralization function (Clivot et al, 2017), C/N soil factor 2;g.g-1;PARAM;1;real;5;35;1;0 +gradtn;thermal gradient in altitude for minimal temperatures ;degree_C.100m-1;STATION;1;real;0.1;3;1;0 +gradtninv;thermal gradient in altitude for minimal temperatures under the inversion level;degree_C.100m-1;STATION;1;real;0.1;3;1;0 +gradtx;thermal gradient in altitude for maximal temperatures ;degree_C.100m-1;STATION;1;real;0.1;3;1;0 +h2ofeuiljaune;water content of yellow leaves (FW);g.g-1;PARPLT;1;real;0.05;1;1;0 +h2ofeuilverte;water content of green leaves (FW);g.g-1;PARPLT;1;real;0.5;1;1;0 +h2ofrvert;water content of fruits before the beginning of dehydration (FW);g.g-1;PARPLT;1;real;0.1;1;1;0 +h2ograinmax;maximal water content of fruits at harvest (FW);g.g-1;PARTEC;1;real;0.05;1;1;0 +h2ograinmin;minimal water content of fruits at harvest (FW);g.g-1;PARTEC;1;real;0.05;1;1;0 +h2oreserve;water content of crop reserve (FW);g.g-1;PARPLT;1;real;0.5;1;1;0 +h2otigestruc;water content of structural stem part (FW);g.g-1;PARPLT;1;real;0.5;1;1;0 +hautbase;basal height of crop;m;PARPLT;1;real;0.1;2;1;1 +hautcoupe;cut height for forage crops (calendar fixed);m;PARTEC;20;real;0.01;0.5;1;0 +hautcoupedefaut;cut height for forage crops (calendar calculated);m;PARTEC;1;real;0.01;0.5;1;0 +haut_dev_x0;Inflexion point parameter for the height~phasic development relationship;SD;PARPLT;1;real;0;5000.0;1;0 +haut_dev_k;Logistic growth rate parameter for the height~phasic development relationship;SD;PARPLT;1;real;0;0.05;1;0 +hauteur_threshold;height difference between crops in intercrop below which we consider the canopies mixed (homogeneous). Used in radiative transfer option as a fallback to Beer-Lambert.;m;PARAM;1;real;0.05;1;1;0 +hautmax;maximum height of crop;m;PARPLT;1;real;0.1;5;1;1 +hautmaxtec;maximal height of the plant allowed by the management;m;PARTEC;1;real;0.5;3;1;0 +hautrogne;cutting height for trimmed plants;m;PARTEC;1;real;0.2;2;1;0 +hcccx;gravimetric water content at field capacity of each type of pebble (dry soil);%;PARAM;10;real;10;110;1;0 +hccf;gravimetric water content at field capacity of each soil layer (in fine earth, dry soil);%;PARSOL;5;real;10;110;1;0 +Hinitf;initial gravimetric water content of each soil layer (in fine earth, dry soil);%;INIT;5;real;5;110;1;0 +hminf;gravimetric water content at wilting point of each soil layer (in fine earth, dry soil);%;PARSOL;5;real;2;25;1;0 +hminm;relative water content (fraction of field capacity) below which mineralisation rate is nil;SD;PARAM;1;real;0;1;1;0 +hminn;relative water content (fraction of field capacity) below which nitrification rate is nil;SD;PARAM;1;real;0;1;1;0 +hoptm;relative water content (fraction of field capacity) above which mineralisation rate is maximum;SD;PARAM;1;real;0.2;1;1;0 +hoptn;relative water content (fraction of field capacity) above which nitrification rate is maximum;SD;PARAM;1;real;0.2;1;1;0 +huilerec;minimal oil content of fruits at harvest (FW);g.g-1;PARTEC;1;real;0.1;1;1;0 +humcapil;threshold of soil gravimetric water content under which capillary rise occurs (dry soil);%;PARSOL;1;real;2;10;1;0 +humirac_decisemis;relative soil moisture threshold above which sowing is possible (0 = no sensitivity to drought, 1 = highly sensitive);SD;PARTEC;1;real;0;1;1;0 +iamf;forced day for AMF stage (999 = not forced);julian_d;PARTEC;1;integer;1;731;0;0 +ichsl;soil number in the param.soil file;SD;USM;1;integer;1;999;0;0 +idebdorm;day of the dormancy entrance;julian_d;PARPLT;1;integer;1;999;0;0 +idor;day of the dormancy entrance;julian_d;java;1;integer;1;999;0;0 +idrp;forced day for DRP stage (999 = not forced);julian_d;PARTEC;1;integer;1;731;0;0 +ifindorm;day of dormancy break;julian_d;PARPLT;1;integer;1;999;0;0 +iflo;forced day for FLO stage (999 = not forced);julian_d;PARTEC;1;integer;1;731;0;0 +ifwater;day of the end of simulation;julian_d;USM;1;integer;1;731;0;0 +ilan;forced day for LAN stage (999 = not forced);julian_d;PARTEC;1;integer;1;731;0;0 +ilax;forced day for LAX stage (999 = not forced);julian_d;PARTEC;1;integer;1;731;0;0 +ilev;forced day for LEV stage (999 = not forced);julian_d;PARTEC;1;integer;1;731;0;0 +imat;forced day for MAT stage (999 = not forced);julian_d;PARTEC;1;integer;1;731;0;0 +infil;infiltrability rate at the base of each soil layer (if codemacropor = 1);mm.d-1;PARSOL;6;real;0.1;100;1;0 +inflomax;maximal number of inflorescences per plant;SD;PARPLT;1;real;0;100;1;1 +infrecouv;ulai at the stage AMF (maximal rate of leaf growth);SD;PARPLT;1;real;0;3;1;0 +inilai;initial value of lai for cotyledons;m2.m-2;PARPLT;1;real;0;1;1;0 +iniprofil;option of smoothing out the initial mineral N and water profiles (spline function): 2 = no, 1 = yes;SD;PARAM;1;integer;1;2;0;0 +inngrain1;NNI below which net absorption of N during grain filling is maximal;SD;PARPLT;1;real;0.3;2;1;0 +inngrain2;NNI above which net absorption of N during grain filling is nil ;SD;PARPLT;1;real;0.3;2;1;0 +INNimin;INNI (instantaneous NNI) corresponding to INNmin;SD;PARPLT;1;real;0;1;1;0 +INNmin;minimum value of NNI possible for the crop;SD;PARPLT;1;real;0;1;1;0 +innsen;parameter of the N stress function active on senescence (INNsenes);SD;PARPLT;1;real;-2;1;1;1 +innturgmin;parameter of the N stress function active on leaf expansion (INNLAI);SD;PARPLT;1;real;-2;1;1;0 +interrang;width of the crop interrow;m;PARTEC;1;real;0;10;1;0 +iplt;date of sowing;julian_d;java;1;integer;1;731;0;0 +iplt0;date of sowing;julian_d;PARTEC;1;integer;1;731;0;0 +irazomax;Maximum nitrogen harvest index;SD;PARPLT;1;real;0;1;1;0 +irec;forced day for REC stage (999 = not forced);julian_d;PARTEC;1;integer;1;731;0;0 +irecbutoir;latest date of harvest (imposed if the crop cycle is not finished at this date);julian_d;PARTEC;1;integer;1;731;0;0 +irmax;maximum harvest index;SD;PARPLT;1;real;0.2;1;1;0 +irrlev;amount of irrigation applied automatically on the sowing day to allow germination when the model calculates irrigation;mm;PARAM;1;real;0;50;1;0 +isen;forced day for SEN stage (999 = not forced);julian_d;PARTEC;1;integer;1;731;0;0 +isnu;date when the soil is bare;julian_d;java;1;integer;1;731;0;0 +iwater;starting day of the simulation;julian_d;USM;1;integer;1;731;0;0 +julapI;date(s) of irrigation ;julian_d;PARTEC;30;integer;1;731;0;0 +julapN;date(s) of fertilizer application;julian_d;PARTEC;20;integer;1;731;0;0 +juldes;day of perennial crop destruction;julian_d;PARTEC;1;integer;1;731;0;0 +juleclair;day of fruits removal;julian_d;PARTEC;10;integer;1;731;0;0 +juleffeuil;day of leaf removal;julian_d;PARTEC;1;integer;1;731;0;0 +julfauche;date(s) of each cut for forage crops ;julian_d;PARTEC;20;integer;1;731;0;0 +julouvre2;day (1/2) of opening the shelter;julian_d;PARTEC;1;integer;1;731;0;0 +julouvre3;day (2/2) of opening the shelter;julian_d;PARTEC;1;integer;1;731;0;0 +julres;date(s) of organic residue addition to soil;julian_d;PARTEC;11;integer;1;731;0;0 +julrogne;day of plant trimming;julian_d;PARTEC;1;integer;1;731;0;0 +jultaille;day of pruning;julian_d;PARTEC;1;integer;1;731;0;0 +jultrav;date(s) of soil tillage;julian_d;PARTEC;11;integer;1;731;0;0 +julvernal;day of initiation of vernalisation in perennial crops (between 1 and 365) ;julian_d;PARPLT;1;integer;1;731;0;0 +jvc;number of vernalising days or dormancy units;d;PARPLT;1;real;0;150;1;1 +jvcmini;minimum number of vernalising days ;d;PARPLT;1;real;0;20;1;0 +Kamm;affinity constant for NH4 in nitrification (if Michaelis_Menten formalism is used);mg.L-1;PARAM;1;real;1;100;1;0 +kbio;potential decay rate of microbial biomass decomposing organic residues;d-1;PARAM;21;real;0;0.2;1;0 +kcouvmlch;extinction coefficient connecting the soil cover to the amount of plant mulch;SD;PARAM;21;real;0;1;1;0 +Kd;Affinity constant for nitrate in denitrification;mg.L-1;PARAM;1;real;10;500;1;0 +kdesat;rate constant of de-saturation ;d-1;PARAM;1;real;1;20;1;0 +kdisrac;rate constant defining root length distribution throughout the profile;cm-2;PARPLT;1;real;0.0002;0.002;1;0 +khaut;extinction coefficient connecting LAI to crop height;SD;PARPLT;1;real;0.2;2;1;1 +Kmabs1;affinity constant of N uptake by roots for the fast uptake system;micromole.L-1;PARPLT;1;real;20;200;1;0 +Kmabs2;affinity constant of N uptake by roots for the low uptake system;micromole.L-1;PARPLT;1;real;4000;40000;1;0 +kmax;maximum crop coefficient for water requirements (= MET/PET);SD;PARPLT;1;real;0.5;4;1;0 +Kmin;minimum snow melting rate on 21 December;mm.degree_C-1.d-1;STATION;1;real;1.5;2.5;1;0 +krepracperm;parameter of biomass root partitioning : evolution of the ratio root/total (permanent trophic link);SD;PARPLT;1;real;0.0001;1;1;0 +krepracseu;parameter of biomass root partitioning : evolution of the ratio root/total (trophic link by thresholds);SD;PARPLT;1;real;0.0001;1;1;0 +ksol;soil hydraulic conductivity in the vicinity of mole drains;SD;PARSOL;1;real;0.0001;1;1;0 +kstemflow;extinction coefficient connecting LAI to stemflow;SD;PARPLT;1;real;0.1;2;1;0 +ktrou;extinction coefficient of PAR through the crop (used in the radiative transfer module);SD;PARPLT;1;real;0.1;2;1;1 +lai0;initial leaf area index;m2.m-2;INIT;1;real;0;10;1;0 +laicomp;LAI above which competition between plants starts;m2.m-2;PARPLT;1;real;0;1;1;0 +laidebeff;LAI at the beginning of leaf removal;m2.m-2;PARTEC;1;real;1;10;1;0 +laieffeuil;LAI removed from the crop at day juleffeuil;m2.m-2;PARTEC;1;real;0.05;10;1;0 +laiplantule;LAI of plantlet at the plantation;m2.m-2;PARPLT;1;real;0;8;1;0 +lairesiduel;residual LAI after each cut of forage crop;m2.m-2;PARTEC;20;real;0;2;1;0 +largrogne;trimmed width;m;PARTEC;1;real;0.1;2;1;0 +largtec;technical width;m;PARTEC;1;real;0.1;2;1;0 +latitude;latitude of the site;degree;STATION;1;real;-90;90;1;0 +locferti;soil depth at which fertiliser is applied;cm;PARTEC;1;integer;0;30;0;0 +locirrig;soil depth at which irrigation is applied;cm;PARTEC;1;integer;1;30;0;0 +longsperac;specific root length;cm.g-1;PARPLT;1;real;250;25000;1;0 +lvfront;root density at the root apex;cm.cm-3;PARPLT;1;real;0.02;1;1;0 +lvmax;maximum root length density in the top soil (used to calculate root mass);cm.cm-3;PARPLT;1;real;0;5;1;0 +lvopt;root length density (RLD) above which water and N uptake are maximum and independent of RLD;cm.cm-3;PARAM;1;real;0.2;1;1;0 +magrain0;initial grain dry weight;g.m-2;INIT;1;real;0;5;1;0 +maperenne0;initial value of biomass of storage organs in perennial crops;t.ha-1;INIT;1;real;0;30;1;0 +margerogne;topping occurs when plant height exceeds (hautrogne+margerogne) when automatic trimming is activated;m;PARTEC;1;real;0.01;1;1;0 +masec0;initial plant biomass (if the option to simulate N and C reserves is not activated);t.ha-1;INIT;1;real;0;10;1;0 +masecmeta;biomass of the plantlet supposed to be composed of metabolic N;t.ha-1;PARPLT;1;real;0.1;1;1;0 +masecNmax;aerial biomass above which N dilution occurs (critical and maximal curves);t.ha-1;PARPLT;1;real;0.05;5;1;0 +masecnp0;initial aerial biomass;t.ha-1;INIT;1;real;0;10;1;0 +masecplantule;initial shoot biomass of plantlet;t.ha-1;PARPLT;1;real;0.002;4;1;0 +masvolcx;bulk density of each type of pebble;g.cm-3;PARAM;10;real;0.5;5;1;0 +max_pdenit;maximal value of the denitrification potential (if code_pdenit = 2);kg.ha-1.cm-1.d-1;PARAM;1;real;0;100;1;0 +maxazorac;mineral N concentration in soil above which root growth is maximum ;kg.ha-1.cm-1;PARPLT;1;real;0.1;5;1;0 +maxtalle;maximum tillers density per soil area;tiller.m-2;PARPLT;1;real;0;10000;1;0 +min_pdenit;minimal value of the denitrification potential (if code_pdenit = 2);kg.ha-1.cm-1.d-1;PARAM;1;real;0;2;1;0 +minazorac;mineral N concentration in soil below which root growth is reduced ;kg.ha-1.cm-1;PARPLT;1;real;0;5;1;0 +minefnra;reduction factor on root growth when soil mineral N is limiting (< minazorac);SD;PARPLT;1;real;0;1;1;0 +mouillabil;maximum wettability of leaves;mm.m-2;PARPLT;1;real;0.05;3;1;0 +mouillabilmulch;maximum wettability of crop mulch;mm.t-1.ha;PARAM;5;real;0.05;5;1;0 +mscoupemini;minimum value of aerial biomass required to make a cut of forage crop;t.ha-1;PARTEC;20;real;1;10;1;0 +msresiduel;residual aerial biomass after a cut of a forage crop;t.ha-1;PARTEC;20;real;0;5;1;0 +mulchbat;mulch depth at which a crust occurs (a value must be given but if in the plt.xml the vigueurbat parameter is equal to 1 then the parameter is inactive);cm;PARSOL;1;real;0;2;1;0 +nbans;number of years for a simulation;years;USM;1;integer;1;100;0;0 +nbcueille;number of fruit harvests during the crop cycle: 1 = one harvest, 2 = several harvests;code 1/2;PARTEC;1;integer;1;2;0;0 +nbfeuilplant;leaf number per plant when planting;leaf.plant-1;PARPLT;1;integer;0;10;0;0 +nbfgellev;leaf number at the end of the juvenile phase (frost sensitivity) ;leaf.plant-1;PARPLT;1;integer;1;5;0;0 +nbgrmax;maximum number of fruits per surface area;m-2;PARPLT;1;real;0;1000000;1;1 +nbgrmin;minimum number of fruits per surface area;m-2 ;PARPLT;1;real;0;10000;1;1 +nbinflo;imposed number of inflorescences per plant;inflorescence.plant-1;PARPLT;1;real;1;1000;1;1 +nbinfloecl;number of inflorescences or fruits removed at fruit removal ;number.plant-1;PARTEC;10;real;0;10;1;0 +nbj_pr_apres_semis;number of days used to calculate rainfall requirement to start sowing (if codedecisemis is activated);d;PARTEC;1;integer;1;20;0;0 +nbjgerlim;maximum number of days after grain imbibition allowing full germination;d;PARPLT;1;integer;1;50;0;0 +nbjgrain;number of days used to compute the number of viable grains;d;PARPLT;1;integer;5;40;0;1 +nbjmaxapresrecolte;maximum number of days allowed for harvest (if the soil compaction option is activated);d;PARTEC;1;integer;0;90;0;0 +nbjmaxapressemis;maximum number of days allowed for sowing (if the soil compaction option is activated);d;PARTEC;1;integer;0;90;0;0 +nbjoursrrversirrig;number of days during which rainfall is replaced by irrigation in the soil after a sowing poquet;d;PARAMV6;1;integer;0;366;0;0 +nbjres;number of residue additions;SD;PARTEC;1;integer;0;8;0;0 +nbjseuiltempref;number of days without frost for sowing (if sowing decision option is activated);d;PARTEC;1;integer;1;60;0;0 +nbjtrav;number of tillage operations;SD;PARTEC;1;integer;0;8;0;0 +nboite;number of boxes or age classes of fruits used to calculate fruit growth for undeterminate crops ;SD;PARPLT;1;integer;1;20;0;0 +nbplantes;number of simulated plants;SD;USM/USMXML;1;integer;1;2;0;0 +NH3ref;NH3 concentration in the atmosphere;microgram.m-3;STATION;1;real;0;10;1;0 +nh4_min;minimum (fixed ?) NH4 concentration found in soil;mg.kg-1;PARAM;1;real;0;20;1;0 +NH4initf;initial amount of NH4-N in each of the soil layers (in fine earth);kg.ha-1;INIT;5;real;0;200;1;0 +nlevlim1;number of days after germination after which plant emergence is reduced;d;PARPLT;1;integer;1;100;0;0 +nlevlim2;number of days after germination after which plant emergence is impossible;d;PARPLT;1;integer;1;100;0;0 +Nmeta;proportion of metabolic N in the plantlet;%;PARPLT;1;real;0;100;1;0 +Nminres;proportion of mineral N content in organic residues (FW);%;PARTEC;11;real;0;30;1;0 +Nminres_pature;proportion of N mineral content in animal feces (FW);%;PARAMV6;1;real;0;100;1;0 +NO3initf;initial amount of NO3-N in each of the soil layers (in fine earth);kg.ha-1;INIT;5;real;0;200;1;0 +nom;name of the USM;SD;USM;1;character;0;0;0;0 +nomsol;name of the soil;SD;USM/USMXML;1;character;0;0;0;0 +Norg;soil organic N content in the first soil layer (constant down to the depth profhum, dry soil);%;PARSOL;1;real;5.00E-02;0.5;1;0 +Nreserve;maximal proportion of N in plant reserves (difference between the maximal and critical dilution curves);%;PARPLT;1;real;0;100;1;0 +nrow;number of plant rows in a strip (if code_strip is activated);SD;PARTEC;1;integer;1;10;1;0 +numsol;soil number;SD;PARSOL/USM;1;integer;0;1000;0;0 +nw_height;Importance of the N & W stress effect on plant heigth.;SD;PARPLT;1;real;0;1;1;0 +obstarac;soil depth at which root growth is stopped due to physical constraints;cm;PARSOL;1;real;10;1000;1;0 +ombragetx;change in air temperature in the northern hillslope of mountains (activated if codadret=2);degree_C;STATION;1;real;-5;5;1;0 +option_pature;option to activate grazing in pastures: 1 = yes, 2 = no;code 1/2;PARAMV6;1;integer;1;2;0;0 +orgeng;maximal amount of fertilizer N that can be immobilized in the soil (fraction for type 8);kg.ha-1;PARAM;8;real;0;100;1;0 +orientrang;direction of crop rows (relative to north);rad;PARTEC;1;real;0;6.28;1;0 +parazofmorte;C/N ratio of dead leaves when crop NNI = 1;g.g-1;PARPLT;1;real;10;20;1;0 +Parazoper;C/N ratio of perennial organs when crop NNI = 1;g.g-1;PARPLT;1;real;10;50;1;0 +parazorac;C/N ratio of roots when crop NNI = 1;g.g-1;PARPLT;1;real;10;50;1;0 +ParazoTmorte;C/N ratio of dead stems when crop NNI = 1;g.g-1;PARPLT;1;real;10;250;1;0 +parsurrg;fraction of photosynthetically active radiation in global radiation (PAR/RG);SD;PARAM;1;real;0.4;0.6;1;0 +par_to_net;Coefficient to compute plant net radiation from absorbed PAR;SD;PARAM;1;real;0.5;1;1;0 +patm;atmospheric pressure;hPa;STATION;1;real;800;1200;1;0 +penterui;runoff coefficient taking into account the plant mulch;SD;PARSOL;1;real;0;5;1;0 +pentinflores;parameter used to calculate the inflorescences number ;kg-1;PARPLT;1;real;0;10;1;1 +pentlaimax;parameter of the logistic curve of LAI growth ;SD;PARPLT;1;real;0;10;1;0 +pentrecouv;parameter of the logistic curve of soil cover rate;SD;PARPLT;1;real;0;10;1;0 +pertes_restit_ext;fraction of animal feces and urine not returned in grazed paddocks (e.g. in resting area, milking parlour, housing and paths/roads);SD;PARAMV6;1;real;0;1;1;0 +pgrainmaxi;maximum grain weight (at 0% water content);g;PARPLT;1;real;0;5;1;1 +pH0;Initial soil pH (water solution);pH;PARSOL;1;real;4;9;1;0 +phiv0;parameter allowing the calculation of the climate under shelter;SD;STATION;1;real;0;0.01;1;0 +pHmaxden;pH beyond which the N2O molar fraction in the denitrification process is minimum (<= ratiodenit);pH;PARAM;1;real;6;10;1;0 +pHmaxnit;soil pH above which nitrification rate is maximum;pH;PARAM;1;real;6;9;1;0 +pHmaxvol;soil pH above which NH3 volatilisation derived from fertiliser is maximum;pH;PARAM;1;real;6;9;1;0 +pHminden;pH below which the N2O molar fraction in the denitrification process is maximum (100% );pH;PARAM;1;real;3;6.5;1;0 +pHminnit;soil pH below which nitrification is nil;pH;PARAM;1;real;3;6;1;0 +pHminvol;soil pH below which NH3 volatilisation derived from fertiliser is nil;pH;PARAM;1;real;3;6;1;0 +phobase;basal photoperiod ;hours;PARPLT;1;real;0;24;1;1 +phobasesen;photoperiod under which the photoperiodic stress affects the lifespan of leaves;hours;PARPLT;1;real;1;12;1;0 +phosat;saturating photoperiod;hours;PARPLT;1;real;0;24;1;1 +pHvols;parameter used to calculate the variation of soil pH after the addition of slurry;pH;PARAM;1;real;5;9;1;0 +phyllotherme;thermal duration between the apparition of two successive leaves on the main stem;degree_d;PARPLT;1;real;10;150;1;0 +plNmin;minimal amount of rain required to start an automatic N fertilisation;mm.d-1;PARAM;1;real;5;30;1;0 +pluiebat;minimal amount of rain required to create a soil crust (a value must be given but if in the plt.xml the vigueurbat parameter is equal to 1 then the parameter is inactive);mm.d-1;PARSOL;1;real;5;100;1;0 +pminruis;minimal amount of rain required to produce runoff ;mm.d-1;PARAM;1;real;2;50;1;0 +Pns;density of the new snow;kg.m-3;STATION;1;real;10;200;1;0 +potgermi;soil water potential below which seed imbibition is impeded;MPa;PARPLT;1;real;-4.2;-0.1;1;0 +primingmax;maximum priming ratio (relative to SOM decomposition rate);SD;PARAM;1;real;1;5;1;0 +prof;snow cover threshold for snow insulation;cm;STATION;1;real;5;15;1;0 +profdenit;soil depth at which denitrification is active (if codedenit is activated);cm;PARSOL;1;real;10;40;1;0 +profdrain;depth of mole drains;cm;PARSOL;1;integer;20;200;1;0 +profhum;maximum soil depth with an active biological activity;cm;PARSOL;1;real;10;150;1;0 +profhumrecolteuse;soil depth at which moisture is considered to allow harvesting (if soil compaction is activated);cm;PARTEC;1;real;0;100;1;0 +profhumsemoir;soil depth at which moisture is considered to allow sowing (if soil compaction is activated);cm;PARTEC;1;real;0;100;1;0 +profimper;upper depth of the impermeable layer (from the soil surface);cm;PARSOL;1;real;50;200;1;0 +proflabour;minimal soil depth for ploughing (if soil compaction is activated);cm;PARAM;1;real;0;100;1;0 +profmes;depth of measurement of the soil water reserve;cm;PARTEC;1;real;10;1000;1;0 +profnod;maximum depth at which N2 fixation by legume crops is possible;cm;PARPLT;1;real;10;50;1;0 +profres;upper depth of organic residue incorporation ;cm;PARTEC;11;real;0;30;1;0 +profsem;depth of sowing;cm;PARTEC;1;real;0;10;1;0 +proftrav;maximum depth affected by soil tillage;cm;PARTEC;11;real;0;50;1;0 +proftravmin;minimal soil depth for chisel tillage (if soil compaction is activated);cm;PARAM;1;real;0;100;1;0 +prophumtassrec;soil moisture content (fraction of field capacity) above which compaction may occur and delay harvest;SD;PARAM;1;real;0.8;1.8;1;0 +prophumtasssem;soil moisture content (fraction of field capacity) above which compaction may occur and delay sowing;SD;PARAM;1;real;0.8;1.8;1;0 +propjgermin;minimal fraction of the duration nbjgerlim when the temperature is higher than the temperature threshold Tdmax ;%;PARPLT;1;real;0;1;1;0 +proprac;ratio of root mass to aerial mass at harvest;SD;PARAM;1;real;0.05;0.5;1;0 +propracfmax;fraction of fine roots emitted in the layer 0-1 cm (in length, maximum value over the root profile);SD;PARPLT;1;real;0.51;0.95;1;0 +Propres;maximal fraction of the biomass reserves that can be mobilized from aerial organs in all crops;SD;PARPLT;1;real;0;1;1;0 +propresP;maximal fraction of the biomass reserves that can be mobilized from storage organs in perennials;SD;PARPLT;1;real;0;1;1;0 +PropresPN;maximal fraction of the N reserves that can be mobilized from storage organs in perennials;SD;PARPLT;1;real;0;1;1;0 +ps0;initial density of the snow cover;kg.m-3;INIT;1;real;10;1000;1;0 +psihucc;soil water potential corresponding to field capacity ;MPa;PARAM;1;real;-5;-0.1;1;0 +psihumin;soil water potential corresponding to wilting point;MPa;PARAM;1;real;-5;-0.1;1;0 +psisto;potential of stomatal closing (absolute value);bars;PARPLT;1;real;1;25;1;1 +psiturg;potential of the beginning of decrease of the cellular extension (absolute value);bars;PARPLT;1;real;1;15;1;1 +q0;cumulative soil evaporation above which evaporation rate is decreased ;mm;PARSOL;1;real;0;50;1;0 +q10;Q10 used for the dormancy break calculation ;SD;PARPLT;1;real;1.5;3.5;1;0 +qmulchdec;maximal amount of decomposable mulch;t.ha-1;PARAM;21;real;0;5;1;0 +qmulchruis0;amount of mulch above which runoff is suppressed;t.ha-1;PARAM;21;real;0;5;1;0 +QNperenne0;initial value of nitrogen amount in storage organs in perennial crops ;kg.ha-1;INIT;1;real;0;500;1;0 +QNplante0;initial N amount in the plant (if the option to simulate N and C reserves is not activated);kg.ha-1;INIT;1;real;0;500;1;0 +QNplantenp0;initial N amount in non-perennial organs of the plant;kg.ha-1;INIT;1;real;0;200;1;0 +QNpltminINN;minimal amount of N in the plant required to compute INN;kg.ha-1;PARAM;1;real;0;50;1;0 +qres;mass of organic residues added to soil (fresh weight);t.ha-1;PARTEC;11;real;0;200;1;0 +Qtot_N;total amount of mineral N fertilizer applications ;kg.ha-1;PARTEC;1;real;0;200;1;0 +ra;aerodynamic resistance (used in volatilization module with the PET approach);s.m-1;STATION;1;real;10;70;1;0 +rapdia;ratio of coarse roots diameter to fine roots diameter;SD;PARPLT;1;real;1;9.12;1;0 +rapforme;ratio of thickness to width of the crop shape (negative when the base of the form < top);SD;PARPLT;1;real;-5;5;1;0 +rapNmindec;slope of the linear relationship between the fraction of mineral N available for residue decomposition and the amount of C in decomposing residues;g.g-1;PARAMV6;1;real;0;0.01;1;0 +rapsenturg;threshold soil water content active to simulate water senescence stress as a proportion of the turgor stress;SD;PARPLT;1;real;0.5;1.5;1;1 +ratiodenit;fraction of N2O emitted per unit of N denitrified;SD;PARAM;1;real;0;1;1;0 +ratiodurvieI;life span of early leaves expressed as a fraction of the life span of the last leaves emitted DURVIEF;SD;PARPLT;1;real;0;1;1;0 +ratiol;water stress index below which irrigation is started in automatic mode (0 in manual mode);SD;PARTEC;1;real;0.2;1;1;0 +ratiolN;nitrogen stress index below which fertilisation is started in automatic mode (0 in manual mode);SD;PARAMV6;1;real;0.2;1;1;0 +rationit;fraction of N2O emitted per unit of N nitrified;SD;PARAM;1;real;0;1;1;0 +ratiosen;fraction of senescent biomass (relative to total biomass);SD;PARPLT;1;real;0;1;1;0 +rayon;average radius of the roots;cm ;PARPLT;1;real;0.005;0.07;1;0 +rdrain;radius of the mole drains;cm;PARAM;1;real;1;100;1;0 +remobres;fraction of daily remobilisable C reserves;d-1;PARPLT;1;real;0;0.5;1;0 +repracpermax;maximum root biomass relative to total biomass (permanent trophic link);SD;PARPLT;1;real;0.1;0.9;1;0 +repracpermin;minimum root biomass relative to total biomass (permanent trophic link);SD;PARPLT;1;real;0.1;0.9;1;0 +repracseumax;maximum root biomass relative to total biomass (trophic link by thresholds);SD;PARPLT;1;real;0.1;0.9;1;0 +repracseumin;minimum root biomass relative to total biomass (trophic link by thresholds);SD;PARPLT;1;real;0.1;0.9;1;0 +resk;parameter 1/2 used to calculate profres (if code_auto_profres = 1): profres = proftrav *(1-exp(-resk.(proftrav-resz));cm-1;PARTEC;1;real;0.05;0.25;1;0 +resplmax;maximal reserve of biomass;t.ha-1;PARPLT;1;real;0;100;1;0 +ressuite;type of crop residue: roots / whole_crop / straw+roots / stubble+roots / prunings;SD;PARTEC;1;character;0;0;0;0 +restemp0;initial biomass of metabolic reserves in the perennial organs;t.ha-1;INIT;1;real;0;15;1;0 +restit;option of restitution in case of pasture yes (1), no (2);code 1/2;PARTEC;20;integer;1;2;0;0 +resz;parameter 2/2 used to calculate profres (if code_auto_profres = 1): profres = proftrav *(1-exp(-resk.(proftrav-resz));cm;PARTEC;1;real;1;10;1;0 +rsmin;minimal stomatal resistance of leaves;s.m-1;PARPLT;1;real;20;500;1;0 +RTD;root tissue density;g.cm-3;PARPLT;1;real;0.05;0.8;1;0 +rugochisel;roughness length of bare soil after chisel tillage (if soil compaction is activated);m;PARTEC;1;real;0.01;0.2;1;0 +rugolabour;roughness length of bare soil after mouldboard ploughing (if soil compaction is activated);m;PARTEC;1;real;0.01;0.2;1;0 +ruisolnu;fraction of runoff (relative to total rainfall) in a bare soil ;SD;PARSOL;1;real;0;1;1;0 +scale_tdenitopt;parameter related to the range of optimum temperature for denitrification;SD;PARAM;1;real;10;40;1;0 +scale_tnitopt;parameter related to the range of optimum temperature for nitrification;SD;PARAM;1;real;5;30;1;0 +Sdepth0;initial snow cover depth;m;INIT;1;real;0;3;1;0 +Sdry0;initial water in solid state in the snow cover;mm;INIT;1;real;0;300;1;0 +sea;specific area of fruit envelops;cm2.g-1;PARPLT;1;real;0;300;1;0 +sensanox;index of anoxia sensitivity (0 = insensitive, 1 = highly sensitive);SD;PARPLT;1;real;0;1;1;0 +sensiphot;index of photoperiod sensitivity (1 = insensitive, 0 = highly sensitive);SD;PARPLT;1;real;0;1;1;1 +sensrsec;index of root sensitivity to drought (1 = insensitive, 0 = highly sensitive);SD;PARPLT;1;real;0;1;1;0 +separateurrapport;column separator in rapport.sti file;SD;PARAM;1;character;0;0;0;0 +seuilLAIapex;maximal value of LAI+LAIapex when LAIapex is > 0;m2.m-2;PARPLT;1;real;0;10;1;0 +seuilmortalle;relative transpiration threshold to calculate tiller mortality;mm.d-1;PARPLT;1;real;0;10;1;0 +seuilreconspeupl;tiller density below which the entire population will not be regenerated;m-2;PARPLT;1;real;0;4000;1;0 +sigmadistalle;parameter used for calculating tiller mortality (gamma law) ;SD;PARPLT;1;real;0;0.5;1;0 +slamax;maximum SLA (specific leaf area) of green leaves;cm2.g-1;PARPLT;1;real;50;500;1;1 +slamin;minimum SLA (specific leaf area) of green leaves;cm2.g-1;PARPLT;1;real;50;500;1;0 +spfrmax;maximal sources/sinks value allowing the trophic stress calculation for fruit onset;SD;PARPLT;1;real;0.7;2;1;0 +spfrmin;minimal sources/sinks value allowing the trophic stress calculation for fruit onset;SD;PARPLT;1;real;0;1;1;0 +splaimax;maximal sources/sinks value allowing the trophic stress calculation for leaf growing;SD;PARPLT;1;real;0.7;2;1;0 +splaimin;minimal value of ratio sources/sinks for the leaf growth ;SD;PARPLT;1;real;0.01;1;1;0 +stade0;crop stage at the beginning of simulation;SD;INIT;1;character;0;0;0;0 +stadebbchamf;equivalent stage in BBCH-scale (amf= maximum acceleration of leaf growth, end of juvenile phase) ;SD;PARPLT;1;character;0;0;0;0 +stadebbchdebdes;equivalent stage in BBCH-scale (debdes= date of onset of water dynamics in harvested organs);SD;PARPLT;1;character;0;0;0;0 +stadebbchdrp;equivalent stage in BBCH-scale (drp = starting date of filling of harvested organs);SD;PARPLT;1;character;0;0;0;0 +stadebbchfindorm;equivalent stage in BBCH-scale (end of dormancy);SD;PARPLT;1;character;0;0;0;0 +stadebbchflo;equivalent stage in BBCH-scale (flowering);SD;PARPLT;1;character;0;0;0;0 +stadebbchger;equivalent stage in BBCH-scale (germination);SD;PARPLT;1;character;0;0;0;0 +stadebbchlax;equivalent stage in BBCH-scale (lax = maximum leaf area index, end of leaf growth );SD;PARPLT;1;character;0;0;0;0 +stadebbchlev;equivalent stage in BBCH-scale (emergence);SD;PARPLT;1;character;0;0;0;0 +stadebbchmat;equivalent stage in BBCH-scale (maturity);SD;PARPLT;1;character;0;0;0;0 +stadebbchnou;equivalent stage in BBCH-scale (fruit set);SD;PARPLT;1;character;0;0;0;0 +stadebbchplt;equivalent stage in BBCH-scale (sowing);SD;PARPLT;1;character;0;0;0;0 +stadebbchrec;equivalent stage in BBCH-scale (harvest);SD;PARPLT;1;character;0;0;0;0 +stadebbchsen;equivalent stage in BBCH-scale (senescence);SD;PARPLT;1;character;0;0;0;0 +stadecoupedf;stage of automatic cut for forage crops;SD;PARTEC;1;character;0;0;0;0 +stage_end_irrigauto;phenological stage for ending automatic irrigations (plt, ger, lev, amf, lax, drp ,flo, sen, rec, mat, debdorm, findorm);SD;PARTEC;1;character;0;0;0;0 +stage_start_irrigauto;phenological stage for starting automatic irrigations (plt, ger, lev, amf, lax, drp ,flo, sen, rec, mat, debdorm, findorm);SD;PARTEC;1;character;0;0;0;0 +stage_const_height;Stage at which the plant height remains constant (lax, sen, flo, drp, mat, rec, and no for nothing);SD;PARPLT;1;character;0;0;0;0 +stamflax;cumulative thermal time between the stages AMF (maximum acceleration of leaf growth, end of juvenile phase) and LAX (maximum leaf area index, end of leaf growth );degree_d;PARPLT;1;real;0;6000;1;1 +stdnofno;cumulative thermal time between the beginning and the end of nodulation;degree_d;PARPLT;1;real;0;500;1;0 +stdordebour;cumulative thermal time between the dormancy break and the bud break ;degree_d;PARPLT;1;real;0;20000;1;1 +stdrpdes;cumulative thermal time between the DRP stage (starting date of filling of harvested organs) and DEBDES (date of onset of water dynamics in harvested organs);degree_d;PARPLT;1;real;0;900;1;1 +stdrpmat;cumulative thermal time between the stages DRP (starting date of filling of harvested organs) and MAT (maturity);degree_d;PARPLT;1;real;0;2000;1;1 +stdrpnou;cumulative thermal time between the stages DRP (starting date of filling of harvested organs) and NOU (end of setting);degree_d;PARPLT;1;real;0;6000;1;1 +stemflowmax;maximal fraction of rainfall flowing down along the stems ;SD;PARPLT;1;real;0;1;1;0 +stflodrp;cumulative thermal time between FLO (anthesis) and DRP (starting date of filling of harvested organs) (only for indication);degree_d;PARPLT;1;real;0;500;1;1 +stfnofvino;cumulative thermal time between the end of the nodulation and the end of the nodule life ;degree_d;PARPLT;1;real;0;500;1;0 +stlaxsen;cumulative thermal time between the stages LAX (maximum leaf area index, end of leaf growth ) and SEN (beginning of leaf senescence) ;degree_d;PARPLT;1;real;0;6000;1;1 +stlevamf;cumulative thermal time between the stages LEV (emergence) and AMF (maximum acceleration of leaf growth, end of juvenile phase) ;degree_d;PARPLT;1;real;0;6000;1;1 +stlevdno;cumulative thermal time between emergence and the beginning of nodulation ;degree_d;PARPLT;1;real;0;500;1;0 +stlevdrp;cumulative thermal time between the stages LEV (emergence) and DRP (starting date of filling of harvested organs);degree_d;PARPLT;1;real;0;6000;1;1 +stoprac;stage when root growth stops (LAX= maximum leaf area index, end of leaf growth or SEN=beginning of leaf senescence);SD;PARPLT;1;character;0;0;0;0 +stpltger;cumulative thermal time allowing germination;degree_d;PARPLT;1;real;0;100;1;0 +stressdev;maximum phasic delay allowed due to stresses ;SD;PARPLT;1;real;0.1;0.9;1;0 +stsenlan;cumulative thermal time between the stages SEN (beginning of leaf senescence) and LAN;degree_d;PARPLT;1;real;0;6000;1;1 +stubblevegratio;fraction of unharvested biomass stubble to vegetative biomass at harvest;SD;PARTEC;1;real;0;1;1;0 +sucrerec;minimal sugar concentration at harvest (fresh matter);g.g-1;PARTEC;1;real;0.0001;0.5;1;0 +surfapex;equivalent surface of a transpiring apex;m2;PARPLT;1;real;0;0.0001;1;0 +surfouvre1;relative area of the shelter opened the first day of opening;SD;PARTEC;1;real;0.1;0.8;1;0 +surfouvre2;relative area of the shelter opened the second day of opening;SD;PARTEC;1;real;0.1;0.8;1;0 +surfouvre3;relative area of the shelter opened the third day of opening;SD;PARTEC;1;real;0.1;0.8;1;0 +Swet0;initial water in liquid state in the snow cover;mm;INIT;1;real;0;300;1;0 +swfacmin;minimal value for drought stress index (turfac, swfac, senfac);SD;PARPLT;1;real;0;1;1;1 +SWrf;degree day temperature index for snow refreezing;mm.degree_C-1.d-1;STATION;1;real;0;0.01;1;0 +tauxexportfauche;fraction of cut which is exported;SD;PARTEC;20;real;0;1;1;0 +tauxmortresP;mortality rate of perennial organs ;d-1;PARPLT;1;real;0;0.5;1;0 +tauxrecouvkmax;soil cover rate corresponding to the maximal crop coefficient for water requirement (plant surface / soil surface);m2.m-2;PARPLT;1;real;0.5;2;1;0 +tauxrecouvmax;maximal soil cover rate (plant surface / soil surface);m2.m-2;PARPLT;1;real;0.5;2;1;0 +tcmax;maximum temperature at which growth ceases;degree_C;PARPLT;1;real;10;50;1;0 +tcmin;minimum temperature at which growth ceases;degree_C;PARPLT;1;real;-10;15;1;0 +tcxstop;temperature beyond which foliar growth stops;degree_C;PARPLT;1;real;0;100;1;0 +tdebgel;temperature below which frost affects plant growth;degree_C;PARPLT;1;real;-5;5;1;0 +tdenitopt_gauss;optimum temperature for denitrification;degree_C;PARAM;1;real;0;60;1;0 +tdmax;maximum temperature above which development stops;degree_C;PARPLT;1;real;15;40;1;0 +tdmaxdeb;maximal temperature for hourly calculation of phasic duration between dormancy and bud breaks;degree_C;PARPLT;1;real;0;40;1;0 +tdmin;minimum temperature below which development stops;degree_C;PARPLT;1;real;-10;15;1;0 +tdmindeb;minimal thermal threshold for hourly calculation of phasic duration between dormancy and bud breaks;degree_C;PARPLT;1;real;0;40;1;0 +tdoptdeb;optimal temperature for calculation of phasic duration between dormancy and bud breaks;degree_C;PARPLT;1;real;0;30;1;0 +temax;maximal temperature above which plant growth stops;degree_C;PARPLT;1;real;15;40;1;0 +temin;minimum temperature for development;degree_C;PARPLT;1;real;-10;15;1;1 +tempdeshyd;increase in fruit dehydration rate due to the increase in crop temperature (Tcult-Tair);%.degree_C-1;PARPLT;1;real;0.0001;0.05;1;0 +tempfauche;cumulative thermal time between two cuts of forage crops ;degree_d;PARTEC;20;real;0;2000;1;0 +tempnod1;temperature parameter (1/4) used to calculate N fixation by legumes ;degree_C;PARPLT;1;real;-10;40;1;0 +tempnod2;temperature parameter (2/4) used to calculate N fixation by legumes ;degree_C;PARPLT;1;real;-10;40;1;0 +tempnod3;temperature parameter (3/4) used to calculate N fixation by legumes ;degree_C;PARPLT;1;real;-10;40;1;0 +tempnod4;temperature parameter (4/4) used to calculate N fixation by legumes ;degree_C;PARPLT;1;real;-10;40;1;0 +teopt;optimal temperature (1/2) for plant growth;degree_C;PARPLT;1;real;10;30;1;1 +teoptbis;optimal temperature (2/2) for plant growth;degree_C;PARPLT;1;real;10;30;1;0 +tfroid;optimal temperature for vernalisation;degree_C;PARPLT;1;real;-5;10;1;0 +tgelflo10;temperature resulting in 10% of frost damages on flowers and fruits;degree_C;PARPLT;1;real;-25;0;1;0 +tgelflo90;temperature resulting in 90% of frost damages on flowers and fruits;degree_C;PARPLT;1;real;-25;0;1;0 +tgeljuv10;temperature resulting in 10% of frost damage on LAI (juvenile stage);degree_C;PARPLT;1;real;-25;0;1;1 +tgeljuv90;temperature resulting in 90% of frost damage on LAI (juvenile stage);degree_C;PARPLT;1;real;-25;0;1;0 +tgellev10;temperature resulting in 10% of frost damages on plantlet;degree_C;PARPLT;1;real;-25;0;1;1 +tgellev90;temperature resulting in 90% of frost damages on plantlet;degree_C;PARPLT;1;real;-25;0;1;0 +tgelveg10;temperature resulting in 10% of frost damage on LAI (adult stage);degree_C;PARPLT;1;real;-25;0;1;1 +tgelveg90;temperature resulting in 90% of frost damage on LAI (adult stage);degree_C;PARPLT;1;real;-25;0;1;0 +tgmin;minimum temperature below which emergence is stopped;degree_C;PARPLT;1;real;-10;15;1;0 +tigefeuil;ratio stem (structural part)/leaf;SD;PARPLT;1;real;0;3;1;1 +tigefeuilcoupe;ratio stem (structural part)/leaf on the cutting day;SD;PARPLT;1;real;0;3;1;0 +tletale;lethal temperature for the plant;degree_C;PARPLT;1;real;-30;-1;1;0 +tmaxremp;maximal temperature above which grain filling stops;degree_C;PARPLT;1;real;10;40;1;0 +tmaxseuil;maximum temperature when snow cover is higher than prof;degree_C;STATION;1;real;-0.5;0.5;1;0 +Tmf;threshold temperature for snow melting;degree_C;STATION;1;real;0;1;1;0 +tmin_mineralisation;minimal temperature for decomposition of humified organic matter;degree_C;PARAM;1;real;0.05;0.5;1;0 +tminremp;minimal temperature below which grain filling stops;degree_C;PARPLT;1;real;0;20;1;0 +tminseuil;minimum temperature when snow cover is higher than prof;degree_C;STATION;1;real;-1;0;1;0 +tnitmax;maximal temperature above which nitrification stops;degree_C;PARAM;1;real;30;50;1;0 +tnitmin;minimal temperature below which nitrification stops;degree_C;PARAM;1;real;-10;20;1;0 +tnitopt;optimal temperature (1/2) for nitrification;degree_C;PARAM;1;real;10;40;1;0 +tnitopt_gauss;optimal temperature (1/2) for nitrification;degree_C;PARAM;1;real;0;50;1;0 +tnitopt2;optimal temperature (2/2) for nitrification;degree_C;PARAM;1;real;20;45;1;0 +transplastic;transmission coefficient of the plastic shelter;SD;PARTEC;1;real;0.3;0.9;1;0 +trefh;reference temperature for decomposition of humified organic matter;degree_C;PARAM;1;real;-10;20;1;0 +trefr;reference temperature for decomposition of organic residues;degree_C;PARAM;1;real;-10;20;1;0 +trmax;maximum air temperature (tmax) above which all precipitation is assumed to be rain;degree_C;STATION;1;real;0.5;1.5;1;0 +tsmax;maximum air temperature (tmax) below which all precipitation is assumed to be snow;degree_C;STATION;1;real;-3;-0.5;1;0 +tustressmin;water stress index (min(turfac,inns)) below which there is an extra LAI senescence;SD;PARPLT;1;real;0.3;1;1;0 +typecailloux;Pebbles type: 1 = Beauce limestone1, 2 = Beauce limestone, 3 = Lutetian limestone, 4 = Lutetian Brackish marl and limestone, 5 = morainic gravels, 6 = unweathered flint, sandstone or granite, 7 = weathered granite, 8 = Jurassic limestone 9 = Pebbles from Magneraud;SD;PARSOL;5;integer;1;10;0;0 +typsol;soil type;SD;PARSOL;1;character;0;0;0;0 +udlaimax;ulai from which the rate of leaf growth decreases ;SD;PARPLT;1;real;1;3;1;0 +upvttapI;thermal time from emergence (UPVT units) driving irrigation;degree_d;PARTEC;30;integer;0;200;0;0 +upvttapN;thermal time from emergence (UPVT units) driving fertilization;degree_d;PARTEC;20;integer;0;200;0;0 +usm;name of the USM;SD;USMXML;1;character;0;0;0;0 +Vabs2;N uptake rate at which fertilizer loss is divided by 2;kg.ha-1.d-1;PARAM;1;real;0.5;5;1;0 +variete;cultivar number corresponding to the cultivar name in the plant file;SD;PARTEC;1;integer;1;200;0;0 +vigueurbat;plant vigor index allowing to emerge through a soil crust ;SD;PARPLT;1;real;0.0001;1;1;0 +vitirazo;rate of increase of the N harvest index vs time;g.g-1.d-1;PARPLT;1;real;0.001;0.04;1;1 +vitircarb;rate of increase of the C harvest index vs time;g.g-1.d-1;PARPLT;1;real;0.001;0.02;1;1 +vitircarbT;rate of increase of the C harvest index vs thermal time;g.g-1.degree_d-1;PARPLT;1;real;0.00005;0.002;1;1 +vitno;rate of increase of the potential biological fixation rate after nodule onset, per unit of thermal time;number.degree_d-1;PARPLT;1;real;0.001;0.01;1;0 +vitprophuile;rate of increase of oil harvest index vs time;g.g-1.d-1;PARPLT;1;real;0.001;0.01;1;1 +vitpropsucre;rate of increase of sugar harvest index vs time;g.g-1.d-1;PARPLT;1;real;0.001;0.01;1;1 +vitreconspeupl;rate of regeneration of the tiller population;degree_C-1;PARPLT;1;real;0;0.1;1;0 +vlaimax;ulai at the inflexion point of the function DELTAI=f(ULAI);SD;PARPLT;1;real;1.5;2.5;1;0 +Vmax1;maximum specific N uptake rate with the low affinity transport system;micromole.cm-1.h-1;PARPLT;1;real;0.0002;0.01;1;0 +Vmax2;maximum specific N uptake rate with the high affinity transport system;micromole.cm-1.h-1;PARPLT;1;real;0.002;0.1;1;0 +vnitmax;maximum nitrification rate (if Michaelis-Menten formalism is used);mg.kg-1.d-1;PARAM;1;real;0;100;1;0 +voleng;maximal fraction of mineral fertilizer that can be volatilized ;SD;PARAM;8;real;0;1;1;0 +vpotdenit;potential rate of denitrification for the whole denitrifying layer;kg.ha-1.d-1;PARSOL;1;real;0.3;10;1;0 +wdata1;name of the first climate file;SD;USM;1;character;0;0;0;0 +wdata2;name of the last climate file;SD;USM;1;character;0;0;0;0 +wfpsc;WFPS (Water filled porosity space) threshold above which denitrification occurs;SD;PARAM;1;real;0.3;1;1;0 +Wh;N/C ratio of soil humus;g.g-1;PARAM;1;real;0.05;0.14;1;0 +Xorgmax;maximal amount of N immobilised in soil derived from the mineral fertilizer ;kg.ha-1;PARAM;1;real;100;500;1;0 +y0msrac;minimal amount of root mass at harvest (when aerial biomass is nil);t.ha-1;PARAM;1;real;0;5;1;0 +yres;Carbon assimilation yield by the microbial biomass during crop residues decomposition;SD;PARAM;21;real;0.3;0.7;1;0 +z0solnu;roughness length of bare soil;m;PARSOL;1;real;0.01;0.2;1;0 +zesx;maximal soil depth affected by soil evaporation;cm;PARSOL;1;real;10;150;1;0 +zlabour;depth of ploughing (reference profile);cm;PARPLT;1;real;0;100;1;0 +zpente;depth at which root density is 50% of the surface root density (reference profile);cm ;PARPLT;1;real;10;200;1;0 +zprlim;maximum depth of the root profile (reference profile);cm ;PARPLT;1;real;10;200;1;0 +zr;reference height of meteorological data measurement;m;STATION;1;real;2;10;1;0 +zrac0;initial depth of root apex of the crop;cm;INIT;1;real;0;200;1;0 +zracplantule;initial depth of root apex of the plantlet;cm;PARPLT;1;real;0;200;1;0 diff --git a/inst/stics/V11.0.0/config/internal_variables.csv b/inst/stics/V11.0.0/config/internal_variables.csv new file mode 100644 index 0000000..9fc2b7f --- /dev/null +++ b/inst/stics/V11.0.0/config/internal_variables.csv @@ -0,0 +1,249 @@ +name;definition;unit;name in code;english name;who +A_LAI;shapes of the senescence curve;SD;;;DR +absodrp;variable relecting the nitrogen status of the crop from the starting date of filling of harvested organs;SD;absodrp;;FF +absz;actual N uptake in each elementary soil layer;kg N ha-1 day-1;absz;;FF +albsol;albedo of the soil;SD;albsol;;ML +alloresp;daily coeffiscient of allocation of remobilised biomass between structural and reserves pools of perennial organs;SD;alloresp;;LS +amplsurf;daily thermal amplitude at the surface;degreesC;amplsurf;;JL +amplz;daily thermal amplitude;degreesC;amplz;;JL +azorac;amount of mineral nitrogen in the rooting zone;kg N ha-1;azorac;;FF +B_LAI;shapes of the growth curve;SD;;;DR +bpsisol;retention curve parameter 2;SD;bpsisol;;JL +CCper;carbon concentration in perennial organs;g C kg-1 DM;CCper;;FF +CCrac;carbon concentration in roots;g C kg-1 DM;CCRac;;FF +coeflev;ratio between the emerged and the germinated density depending on non-optimal water content and temperature conditions;SD;coeflev (l.268 de Stics_levee.f90);;DR +coeflevb;ratio between the emerged and the germinated density depending on the crust layer;SD;coeflev (l.270 de Stics_levee.f90);;ML +concN;mean nitrate concentration in each elementary soil layer;kg N ha-1 mm-1 water;concN;;FF +conv;daily convection flow of N in each elementary soil layer;kg N ha-1 day-1;conv;;FF +crust;indicator of crust conditions at the soil surface;0/1;null;;DR +CsurNper;C/N ratio of the storage organs;SD;;;DR +CsurNresid;C/N ratio of falling leaves;SD;CsurNresid;CN_ratio_falling_leaves;DR +CsurNressuite;C/N ratio of calculated crop residue for the next crop;SD;CsurNressuite;CN_ratio_residu_returning_in_soil;DR +CsurNsol;C to N ratio of soil throughout time;SD;CsurNsol;;FF +cuh;chilling hourly units;degrees C;cuh;;DR +cumoffrN;sum of nitrogen soil supply over the profile;kg N ha-1;cumoffrN;sum_soil_N_supply;DR +da;bulk soil density;g cm-3;daz??;bulk_soil_density;AM +DELTABSO;nitrogen dependant biomass growth;t ha-1 day-1;?;;AM variable +deltai_1;daily increase of the green leaf index for determinate crops;m2 leaf m-2 soil;?;;AM +deltai_2;daily increase of the green leaf index for indeterminate crops;m2 leaf m-2 soil;?;;AM +deltai_dens; density component of deltai; plant m-2; ??; density_component_deltai;AM +deltai_dev;phasic development component of deltai;m2 plant-1 degree.day-1;;deltai_dev;AM +deltai_stress;stress component of deltai;SD;;deltai_stress;AM +deltai_T;thermal component of deltai;degree.days;;deltai_T;AM +deltaimax;maximum increase in leaf expansion;m2 leaf m-2 soil;?;;AM +DELTAMSRESEN;senescence rate of residual dry matter after forage crop cutting;t DM ha-1 day-1;?;;AM +deltat;gradient of the relationship between saturation pressure and temperature;mbars;deltat;saturation_deficit;DR +deltatemp;difference in mean daily temperature inside and outside a greenhouse;degrees C;deltatemp;;ML +deltaz_stress;Stress component of deltaz;SD;??;stress_component_deltaz;AM +deltaz_T;Thermal component of deltaz;cm day-1;??;thermal_component_deltaz;AM +densiteger;density of germinated plants;plants.m-2;densiteger;;ML +densitelev;density of emerged plants;plants.m-2;densitelev;;ML +diff;diffusion flow of N in each elementary soil layer;kg N ha-1 day-1;diff;;FF +difNe;effective diffusion coefficient of nitrate in soil;cm2 day-1;diff;;FF +dltafv;daily biomass partitioning to the structural part of green leaves;t DM ha-1;dltafv;;LS +dltamsrac;daily root gowth;t DM ha-1 day-1;dltamsrac;;FF +dltamsracmort;daily dead root biomass on the root depth;t DM ha-1 day-1;dltamsracmort;dailydeadrootbiomass?;DR +dltaQCracmort; Cumulative amount of C lost by dead roots over the soil profile;kg N ha-1 day-1;;;DR +dltaQNracmort; Cumulative amount of N lost by dead roots over the soil profile;kg N ha-1 day-1;;;DR +dltaremobsen;daily biomass remobilised during leaves senescence;t DM ha-1;dltaremobsen;;LS +dltares;daily biomass partitioning to the temporary reserves;t DM ha-1;deltares;;LS +dltaresper;daily biomass remobilised from temporary reserves allocated to perennial organs reserves;t DM ha-1;dltaresper;;LS +dltarestemp;daily biomass remobilised from temporary reserves to perennial organs;t DM ha-1;dltarestemp;;LS +dltarestemp2;daily biomass remobilised from temporary reserves to perennial organs;t DM ha-1;dltarestemp;;LS +dltat;daily biomass partitioning to the structural part of stems;t DM ha-1;dltat;;LS +dos;saturation deficit within the canopy;mbars;dos;;ML +dpHvol;increase of soil pH after manure application;SD;dpHvol;;FF +dpHvolm;maximum pH increase following the application of slurry (taking into account the amount of inorganic N applied) ;SD;dpHvolm;;FF +drlsenf;length of dead fine roots in layer iz on day n;cm cm-2 soil;;;DR +drlseng;length of dead coarse roots in layer iz on day n;cm cm-2 soil;;;DR +dsat;air saturation deficit;mbars;dsat;air_saturation_deficit;DR +DURAGE;natural lifespan of leaves;Q10;?;;AM +DURVIEFv;maximal lifespan of an adult leaf;Q10;?;;AM +DURVIEIp;lifespan of a young leal (at the AMF stage) expressed as a proportion of DURVIEF;SD;?;;AM +E;snow compaction parameter;mm mm-1 day-1;E;E_snow_compaction;DR +Edirectm;maximum value of Edirect;mm day-1;Edirectm;;ML +effN;Nitrogen use efficiency;SD;effN;NUE;DR +elong;elongation of the coleoptile;cm;elong;;DR +emissa;emissivity of the atmosphere;0-1;emissa;;ML +epz;daily transpiration flow in each elementary soil layer;mm day-1;epz;;FF +ePT(t);potential evapotranspiration according to Priestley-Taylor formula;mm day-1;pas dans le code;;ML +estimet;evapotranspiration estimated from the water balance for the previous day and the climatic demand of the day in case of greenhouse;mm day-1;estimet;;ML +esz;evaporation soil profile;mm day-1 cm-1;esz;;ML +etmax;maximum value of daily evaporation flux;W m-2;etmax;;ML +etmin;minimum value of daily evaporation flux;W m-2;etmin;;ML +FGELJUV;frost index acting on LAI during the juvenile phase;SD;?;;AM +fgellev;frost index acting on plant density during the plantlet phase;SD;fgellev;;DR +FGELVEG;frost index acting on LAI during the vegetative phase;SD;?;;AM +fh;moisture factor on humus and residue decomposition rates;SD;fh;;FF +fluxrac;potential N uptake rate in each elementary soil layer;kg N ha-1 day-1;fluxrac;;FF +fluxsol;daily soil N supply in each elementary soil layer;kg N ha-1 day-1;fluxsol;;FF +FPH;soil pH effect on the volatilisation;pH;volmax;volatilisation_pH_reduction;DR +Fr;ratio of rain in repartition between rain and snow rain;0-1;?;;DR +fracinsol;insolation fraction;0-1;fracinsol;;ML +fruis;proportion of run-off water above the activation threshold (pminruis);SD;fruis;;ML +Fs;ratio of snow in repartition between rain and snow rain;0-1;fs;;DR +ftempremp;thermal stress index as a function of temperature using cardinal temperatures (tminremp et tmaxremp);0-1;ftempremp;;PL +FsNH3;potential ammonia volatilization rate;microgram m-2 day-1;FsNH3;;FF +fth;temperature factor on humus mineralisation rate;SD;fth;;FF +ftr;temperature factor on residue decomposition rate;SD;ftr;;FF +gamma;psychrometrc constant;mb degreeC-1;gamma;gamma_psychometric_constant;DR +gmax;maximum value of daily soil heat flux;W m-2;GMAX;;ML +gmin;minimum value of daily soil heat flux;W m-2;GMIN;;ML +grainsnb;number of grains per square meter;grains m-2;??;grainsnb;BD +ha;residual soil water content in the sed bed;mm water cm soil-1;ha;;ML +HB;soil layer between the seedbe and the root front;cm;null;;DR +hn;wilting point mean in the seed bed;mm water cm soil-1;hn;;DR +hucc;elementary layer soil water content at field capacity;mm water cm soil-1;hucc;;JL +HCUM;available water over the rooting zone;mm water g soil-1 x 100;pas dans le code;;ML +humin;elementary layer soil water content at wilting point;mm water cm soil-1;humin;;JL +humirac;influence of soil water content on germination and root growth;SD;humirac;soil_water_content_germination_roor;AM +humsol;soil moisture;mm water cm soil-1;humsol;;DR +hur;microporosity elementary layer soil water content;mm water cm soil-1;hur;;JL +hx;mean water content at field capacity in the sed bed;mm water cm soil-1;hx;;DR +ilets;date of the plantlet stage;days;ilets;;DR +IMB;date of the beginning of seed moistening;days;null;;DR +INNI;instantaneous nitrogen index;SD;?;;AM variable +jvi;vernalizing contribution of a given day;nb days;;;ML +K;melting rate;mm degrees C-1 day-1;K;K_snow;DR +K_LAI;maximal LAI produced;m2 m-2;;;DR +K2;actual mineralisation rate of humus;day-1;K2;;FF +K2hum;potential mineralisation rate of humus;day-1;K2hum;;FF +kgdiffus;proportion of diffusive radiation reaching the soil;SD;?;;AM +kgdirect;proportion of direct radiation reaching the soil;SD;?;;AM +kh;coefficient of heat transfer in the cold shelter;W m-2 K-1;kh;;ML +ks;coefficient of energy losses between the outside and inside of the shelter;W m-2 K-1;ks;;ML +L;latent heat of vaporization;MJ kg-1;L;latent_heat;DR +laieffcum;LAI removed;SD;laieffcum;LAI_removed;DR +lairognecum;sum of topped leaf area index ;m2 m-2;lairognecum;sum_lai_topped;DR +longsperacf;specific fine root length;cm g-1;;;DR + AM Variable calculated in chap root +longsperacg;specific coarse root length;cm g-1;;;DR + AM Variable calculated in chap root +lracsentot; total length of senescent roots;cm root cm-2 soil; lracsentot; total_death_root;AM devrait etre dans variable +lracsenz; death root length density at depth z;cm root cm-3 soil; lracsenz; death_root_length_density_z;AM unite a verifier +lracz;efficient root length density;cm root cm-3 soil;??;efficient_root_length_density;AM +M;snow in the process of melting;mm day-1;M;M_melting_snow;DR +MASECABSO;biomass accounting for nitrogen absorption;t DM ha-1;?;;AM variable +mouill;water retained on the foliage;mm;mouill;water_retained_by_foliage;DR +Mrf;liquid water in the snow cover in the process of refreezing;mm day-1;Mrf;M_liquid_snow;DR +msracmort;dead root biomass on the root depth;t ha-1;deadrootbiomass?;;DR +nbgraingel; number of frozen grains per square meter;grains m-2;nbgraingel;;PL +nbgrains; number of grains per square meter;grains m-2;nbgrains;;PL +nbjgrauto;days of autotrophy for a moistened seed;days;nbjgrauto;;ML +nbjhumec;maximal period that seedcan be in a moist status without seed death occurs ;days;nbjhumec;;DR +NH3g;ammonia concentration in the gaseous soil phase;mol l-1;NH3g;;FF +NH3surf;ammonia concentration at the soil surface;microgram N m-3;NH3surf;;FF +nit;amount of NO3-N in an elementary layer; kg N ha-1;nit;;JL +nodn;coefficient used to take into account the effect of the soil mineral N content on the potential N fixation;SD;nodn;;FF +Nvolatorg;volatilizable NH4;kg N ha-1;Nvolatorg;;FF +Nvolorg;actual ammonia volatilization rate;kg N ha-1 day-1;Nvolorg;;FF devrait etre ds variables de sortie +offrN;mineral N available for root uptake in each elementary soil layer;kg N ha-1;offrN;;FF +pgraingel; weight of frozen grains per square meter;g m-2;pgraingel;;PL +pgrain; weight of grains per square meter;g m-2;pgrain;;PL +pHvol;soil surface pH varying after organic residue application (such as slurry);SD;pHvol;;FF +propfixpot;phenology-dependent coefficient used to calculate potential N fixation;SD;propfixpot;;FF +propvolat;proportion of the volatilizable N fraction of the residue;SD;propvolat;;FF +ps;density of the snow cover;kg m-3;ps_in;ps_snow_density;DR +psisol;soil potential of the elementary layer;Mpa;psisol;;JL +psisols;retention curve parameter 1;MPa;psisols;;JL +QNplantule;amount of nitrogen in the plantlet;kg N ha-1;null;;DR +QNplmax;maximal amount of N possible in the crop;kg N ha-1;QNplmax;maximal_N_in_plant;DR +raa;aerodynamic resistance between the canopy and the reference height of weather measurements;s m-1;raa;;FF +raamax;maximum daily value of the aerodynamic resistance between the cover et the reference level zr;W m-2;raamax;;ML +raamin;minimum daily value of the aerodynamic resistance between the cover et the reference level zr;W m-2;raamin;;ML +racinepsi;efficient root length density participating in predawn potential, located in the moist layers (PSISOL < -1.5 Mpa), else =0.;cm root cm-3 soil;racinepsi;root_psi;JL un moment racinepsi=lracz comprend pas +rac;resistance of the canopy boundary layer;s m-1;rac;;ML +Ratm;atmospheric component of the long wave radiation;MJ m-2 day-1;Ratm;;ML +rc;resistance of canopy;s m-1;?;;ML +rdiffus;diffusive radiation;MJ m-2 day-1;?;;AM +rdirect;direct radiation;MJ m-2 day-1;?;;AM +rdroit;radiation not intercepted by the crop;MJ m-2 day-1;rdroit;;AM +reprac;underground/total biomass partitioning coefficient;SD; reprac; root_over_total_biomass_partitioning_coefficient;AM +rgex;extraterrestrial radiation;MJ m-2 day-1;rgex;;ML +Rglo;long wave radiation;MJ m-2 day-1;RGLO;;ML +rgmax;maximum daily value of the global radiation;W m-2;rgmax;;ML +rgmin;minimum daily value of the global radiation;W m-2;rgmin;;ML +rl;root length density at depth z;cm root cm-3 soil; rl; root_length_density_z;AM devrait etre dans variable +rlf;length of fine roots in layer iz on day n;cm cm-2 soil;;;DR +rlg;length of coarse roots in layer iz on day n;cm cm-2 soil;;;DR +rlj_dens; plant density component of rlj;plant m-2; ??; plant_density_component_rlj;AM +rlj_dev; plant density component of rlj;m root plant-1 degree-day-1; ??; plant_density_component_rlj;AM +rlj_stress; stress component of root length growth rlj;SD; ??; stress_component_rlj;AM +rlj_T; thermal component of root length growth rlj;degreeC day-1; ??; thermal_component_of_rlj;AM +rljfront; root length growth at the root front; m root m-2 day-1; ??; rlj_at_root_front;AM +rnet_PE;Net radiation for Brunt formula;MJ m-2;rnet;net_radiation;DR +rnet_PT;Net radiation for Priestley-Taylor evapotranspiration calculation;MJ m-2;rnet dans calceeq;net_radiation;DR +rnetmax;maximum value of daily net radiation;W m-2;rnetmax dans caltcult.f90;;ML +rnetmin;minimum value of daily net radiation;W m-2;rnetmin dans caltcult.f90;;ML +rnetP;net radiation affecting the crop;MJ m-2;;;ML +Rsol;surface comopnent of the long wave radiation;MJ m-2 day-1;Rsolglo;;ML +RsRso;total to extraterrestrial radiation ratio;SD;RsRso;;AM +rtransmis;radiation transmistted through the crop;MJ m-2 day-1;rtransmis;;AM +Sdry;water in solid state in the snow cover;mm;Sdry;;PL +S_WE;ratio between the snow water equivalent;mm;;;DR +Swet;water in liquid state in the snow cover;mm;Swet;;PL +sat;macroporosity elementary layer soil water content;mm water cm soil-1;sat;;JL +SB;seed bed;cm;null;;DR +sbv;specific surface area of biomass;cm2 g-1;sbvmax;specific_surface_area_biomass;DR +sbvmax;leaf expansion allowed per unit of biomass accumulated;cm2 g-1;?;;AM +sla;maximum SLA (specific leaf area) of green leaves;cm2 g-1;slamax;maximum_specific_leaf_area;DR +somger;growing degree-days from planting in the seed bed;degrees C;somger;;DR +SOMSEN;current thermal time for senescence;Q10;?;;AM +ST_LAI;growing degree-days since emergence;degreesC;;;DR +stdebsenrac_p; life span of roots;degreeC day-1; ??; life_span_root; AM devrait etre dans parameters +SURFAO;fraction of surface in the shade;SD;?;;AM +SURFAS;fraction of surface in the sun;SD;?;;AM +surfouvre;proportion of vents related to the total surface area of the greenhouse;0-1;surfouvre;;ML +tair;mean air temperature (measured );degreesC;tairveille;mean_air_temperature;DR +TDEW;dewpoint temperature;degreesC;TDEW;;ML +teta;available water content in the root zone;cm3 water cm-3 soil;?;;AM variable +tetsen;threshold soil water content accelering senescence;cm3 water cm-3 soil;?;;AM parameter? tetstomate and teturg designed as variable? or parameter? +TF_LAI;growing degree-days for the point of inflexion of the complete senescence;degrees C;;;DR +TI_LAI;growing degree-days for the point of inflexion of the growth curve ;degrees C;;;DR +tmin;minimum temperature ;degreesC;tmin(n);min_air_temperature;DR +tnh;normalized time (day) for humus mineralization;SD;tnh;;FF +tpm;vapour pressure in air;mbars;tpm;;ML +TRECOUVMAXp;proportion of the soil covered by isolated plant;SD;?;;AM +tsol;soil temperature ;degrees C;tsol;Soil_temp;DR +TURSAL;mean water stress TURFAC experienced since emergence;SD;?;;AM +TVAR;saturating vapour pressure as a function of temperature;mbars;TVAR;;ML +Vabs;specific N absorption capacity of the roots;micromole N h-1 cm-1 root;Vabs;;FF +vabsmoy;Nitrogen uptake rate;Kg N ha-1 day-1;vabsmoy;Nitrogen_uptake_rate;DR +VABSN;nitrogen accumulation rate in the plant (uptake and fixation);kg N ha-1 day-1;?;;AM variable +wfps;water filled pore space;SD;wfps;;BM +wfpscc;water filled pore space at fied capacity;SD;wfpscc;;BM +wsat;total porosity;SD;wsat;;JL +XMULCH;thickness of mulch created by evaporation from the soil;cm;pas dans le code;;ML +z0;crop roughness;m;z0;;ML +z0s;soil or understorey crop roughness;m;z0solnu;;ML +zdemi;root depth that ensures at least an extraction near the soil surface of 20% of the water available;cm; zdemi; threshold_extraction_20%_water_available;AM +znonli;root depth if no obstacle;cm; znonli; root_depth_without_obstacle;AM +code_diff_rac;1 two types of roots (fine and coarse roots or 2 a single mean type of root;SD;codediffroot;;AM voir si cela est bien ce nom parameter +codeinstal;Technical code to describe either seedling or already installed crop;SD;codeinstal;;AM parameter +nhet;number of days of heterotrophy during germination;day;nhet;;AM calcule dans chap root +newrac;root length growth thanks to seed reserve remobilization during germination;m day-1;newrac;;AM variable calculee dans chap root +dis;A voir avec Nicolas;?;dis;;AM variable calculee dans chap root +debsenracf;thermal time units defining the begining of root senescence for fine roots;degreeC day-1;debsenracf;;AM parameter chap root +debsenracg;thermal time units defining the begining of root senescence for coarse roots;degreeC day-1;debsenracg;;AM parameter chap root +drliz;daily root length emission per elementary layer;cm root cm-3 soil;drliz;;AM variable calculee dans chap root +Wi;index of soil water availability (0-1);SD;;;DR +aevap;soil evaporation parameter combining climatic and soils aspects;mm;;;DR +EVAP0;accumulation of evaporative fluxes (esol, Emd, emulch);mm;;;DR +RNETP1;net radiation affecting the crop (use for direct evaporation);MJ m-2 day-1;;;DR +RNETP2;net radiation affecting the crop (use for transpiration);MJ m-2 day-1;;;DR +dh;displacement height;m;;;DR +hmin;water content at permanent wilting point of macro layer;%weight;;;DR +vnit;nitrification rate;mg N kg-1 day-1;vnit;;FF +vnitpot;potential nitrification rate;mg N kg-1 day-1;vnitpot;;FF +theta_sat;volumic soil water content at saturation;cm3 cm-3;theta_sat;;FF +devjour;daily development rate;ND;devjourfr;;PL +k;growth compartment;ND;i;;PL +croifruit;fruit growth;g m-2;croifruit;;PL +teaugrain;Water content of (harvested) organs;g g-1;teaugrain;;PL +dltazo;daily increase of grain nitrogen content;kgN.ha-1.day-1;dltazo;;PL-BD +potcroifruit;potential growth of a fruit;g.fruit-1.day-1;potcroifruit;;BD +dfr;fruit development stage of each age class;SD;dfr;;BD +mafraisfeuille;leaf fresh matter;t.ha-1;mafraisfeuille;;BD +mafraistige;structural stem fresh matter;t.ha-1;mafraistige;;BD +mafraisres;reserve fresh matter;t.ha-1;mafraisres;;BD +resperenne0;initial biomass reserve;t.ha-1;resperenne0;;BD +sum_eos;sum of daily maximum evaporation flux;mm;;;DR +z;soil elementary layer of 1 cm;cm;z;;DR diff --git a/inst/stics/V11.0.0/config/interpolation_lai.def b/inst/stics/V11.0.0/config/interpolation_lai.def new file mode 100644 index 0000000..29f19d6 --- /dev/null +++ b/inst/stics/V11.0.0/config/interpolation_lai.def @@ -0,0 +1,5 @@ +wheat 6.2 0.0097 720 0.0022 1980 +corn 4.27 0.012 647 0.0074 1657 +soybean 3.8 0.016 523 0.004 1589 +salad 0.983 0.0024 260 0.0202 2500 +tomato 3.8 0.016 523 0.004 1589 \ No newline at end of file diff --git a/inst/stics/V11.0.0/config/outputs.csv b/inst/stics/V11.0.0/config/outputs.csv new file mode 100644 index 0000000..2ff7c1a --- /dev/null +++ b/inst/stics/V11.0.0/config/outputs.csv @@ -0,0 +1,830 @@ +Name;Definition;Unit;Source;Type;VarIndex;PltExpoIndex +abso(n);N uptake rate by the crop;kg.ha-1.d-1;p;real;n;2 +age_prairie;age of the forage crop since sowing;year;p;integer;0;1 +airg(n);daily amount of irrigation water;mm.d-1;sc;real;n;0 +albedolai;albedo of the crop including soil and vegetation;SD;sc;real;0;0 +allocfruit;allocation ratio of assimilates to the fruits;0-1;p;real;0;2 +amm_1_30;amount of NH4-N in the soil layer 1 to 30 cm;kg.ha-1;sc;real;0;0 +amm_31_60;amount of NH4-N in the soil layer 31-60 cm;kg.ha-1;sc;real;0;0 +amm_61_90;amount of NH4-N in the soil layer 61-90 cm;kg.ha-1;sc;real;0;0 +ammomes;amount of NH4-N in soil over the depth profmes;kg.ha-1;function;real;0;0 +amptcultmat;mean daily temperature range (tcult) during the reproductive phase (stages lax - rec);degreeC;c;real;0;0 +anit(n);daily amount of fertiliser-N added to crop;kg.ha-1.d-1;sc;real;n;0 +anit_engrais(n);Daily nitrogen provided by fertiliser;kgN.ha-1 j-1;sc;real;n;0 +anit_uree(n);amount of animal urine returned to the soil;kgN.ha-1 j-1;sc;real;n;0 +anoxmoy;index of anoxia over the root depth;0-1;p;real;0;1 +AZamm(1);amount of NH4-N in soil layer 1;kg.ha-1;sc;real;1;0 +AZamm(2);amount of NH4-N in soil layer 2;kg.ha-1;sc;real;2;0 +AZamm(3);amount of NH4-N in soil layer 3;kg.ha-1;sc;real;3;0 +AZamm(4);amount of NH4-N in soil layer 4;kg.ha-1;sc;real;4;0 +AZamm(5);amount of NH4-N in soil layer 5;kg.ha-1;sc;real;5;0 +azlesd;daily amount of NO3-N leached in mole drains;kg.ha-1.d-1;soil;real;0;0 +AZnit(1);amount of NO3-N in soil layer 1;kg.ha-1;soil;real;1;0 +AZnit(2);amount of NO3-N in soil layer 2;kg.ha-1;soil;real;2;0 +AZnit(3);amount of NO3-N in soil layer 3;kg.ha-1;soil;real;3;0 +AZnit(4);amount of NO3-N in soil layer 4;kg.ha-1;soil;real;4;0 +AZnit(5);amount of NO3-N in soil layer 5;kg.ha-1;soil;real;5;0 +azomes;amount of NO3-N in soil over the depth profmes;kg.ha-1;function;real;0;0 +azsup_by_horizon(1);lixiviation under the horizon 1;kgN.ha-1;sc;real;1;0 +azsup_by_horizon(2);lixiviation under the horizon 2;kgN.ha-1;sc;real;2;0 +azsup_by_horizon(3);lixiviation under the horizon 3;kgN.ha-1;sc;real;3;0 +azsup_by_horizon(4);lixiviation under the horizon 4;kgN.ha-1;sc;real;4;0 +azsup_by_horizon(5);lixiviation under the horizon 5;kgN.ha-1;sc;real;5;0 +azsup_under_profmes;lixiviation under the depth of measurement profmes;kgN.ha-1;sc;real;0;0 +bouchon;index showing if the shrinkage slots are opened (0) or closed (1);code 0/1;sc;real;0;0 +Cb;amount of C in the microbial biomass decomposing organic residues mixed with soil;kg.ha-1;sc;real;0;0 +Cbmulch;amount of C in the microbial biomass decomposing organic residues at soil surface (mulch);kg.ha-1;sc;real;0;0 +cdemande;cumulative amount of N needed by the plant (plant needs);kg.ha-1;p;real;0;1 +cEdirect;total evaporation (water evaporated by the soil + intercepted by leaves and mulch) integrated over the cropping season;mm;sc;real;0;1 +cEdirecttout;total evaporation (water evaporated by the soil + intercepted by leaves and mulch) integrated over the simulation period;mm;sc;real;0;1 +cep;cumulative transpiration over the cropping season of plant 1;mm;p;real;0;1 +cep2;cumulative transpiration over the cropping season of plants 1 and 2;mm;sc;real;0;1 +ces;cumulative evaporation over the cropping season;mm;p;real;0;1 +cestout;cumulative evaporation over the simulation period;mm;sc;real;0;0 +cet;cumulative evapotranspiration over the cropping season;mm;p;real;0;1 +cet_from_lev;cumulative evapotranspiration over the cropping season (from emergence or budbreak);mm;sc;real;0;1 +cet_from_plt;cumulative evapotranspiration over the cropping season (from planting or budbreak);mm;sc;real;0;1 +cetm;cumulative maximum evapotranspiration over the cropping season;mm;p;real;0;1 +Cetmtout;cumulative maximum evapotranspiration over the simulation period;mm;c;real;0;0 +cetp;cumulative potential evapotranspiration (PET) over the cropping season;mm;p;real;0;1 +chargefruit;number of filling grains or ripe fruits;m-2;p;real;0;1 +Chuma;amount of active C in humified organic matter;kg.ha-1;sc;real;0;0 +Chumi;amount of inert C in humified organic matter;kg.ha-1;sc;real;0;0 +Chumt;amount of C in humified organic matter (active + inert fractions);kg.ha-1;sc;real;0;0 +cintermulch;cumulative amount of rain intercepted by the mulch;mm;sc;real;0;0 +cinterpluie;cumulative amount of rain intercepted by the leaves;mm;p;real;0;1 +Cmulch;amount of C in the whole plant mulch;kg.ha-1;sc;real;0;0 +Cmulchdec;amount of C in the decomposable mulch;kg.ha-1;sc;real;0;0 +Cmulchnd;amount of C in the non decomposable mulch;kg.ha-1;sc;real;0;0 +CNgrain;N concentration in fruits;% dry weight;p;real;0;2 +Cnondec(1);amount of C in the undecomposable mulch made of residues of type 1;kg.ha-1;sc;real;1;0 +Cnondec(10);amount of C in the undecomposable mulch made of residues of type 10;kg.ha-1;sc;real;10;0 +Cnondec(2);amount of C in the undecomposable mulch made of residues of type 2;kg.ha-1;sc;real;2;0 +Cnondec(3);amount of C in the undecomposable mulch made of residues of type 3;kg.ha-1;sc;real;3;0 +Cnondec(4);amount of C in the undecomposable mulch made of residues of type 4;kg.ha-1;sc;real;4;0 +Cnondec(5);amount of C in the undecomposable mulch made of residues of type 5;kg.ha-1;sc;real;5;0 +Cnondec(6);amount of C in the undecomposable mulch made of residues of type 6;kg.ha-1;sc;real;6;0 +Cnondec(7);amount of C in the undecomposable mulch made of residues of type 7;kg.ha-1;sc;real;7;0 +Cnondec(8);amount of C in the undecomposable mulch made of residues of type 8;kg.ha-1;sc;real;8;0 +Cnondec(9);amount of C in the undecomposable mulch made of residues of type 9;kg.ha-1;sc;real;9;0 +CNplante;N concentration in the aboveground plant;% dry weight;p;real;0;2 +CO2(n);atmospheric CO2 concentration above 330 ppm;ppm;c;real;n;0 +CO2hum;daily amount of CO2-C emitted due to the mineralisation of soil humus;kg.ha-1.d-1;sc;real;0;0 +CO2res;daily amount of CO2-C emitted due to the mineralisation of organic residues;kg.ha-1.d-1;sc;real;0;0 +CO2sol;daily amount of CO2-C emitted due to soil mineralisation (humus and organic residues);kg.ha-1.d-1;sc;real;0;0 +codebbch_output;code of the bbch stage (see plant file);0-99;p;integer;0;1 +concN_W_drained;daily nitrate concentration in drainage water;mg NO3.l-1.day;soil;real;0;0 +concNO3les;nitrate concentration in drained water;mg NO3.l-1;soil;real;0;0 +concNO3sol(1);nitrate concentration in soil layer 1;mg NO3.l-1;sc;real;1;0 +concNO3sol(2);nitrate concentration in soil layer 2;mg NO3.l-1;sc;real;2;0 +concNO3sol(3);nitrate concentration in soil layer 3;mg NO3.l-1;sc;real;3;0 +concNO3sol(4);nitrate concentration in soil layer 4;mg NO3.l-1;sc;real;4;0 +concNO3sol(5);nitrate concentration in soil layer 5;mg NO3.l-1;sc;real;5;0 +condenit;ratio of actual to potential denitrifying rate;0-1;soil;real;0;0 +couvermulch;cover ratio of mulch;0-1;sc;real;0;0 +cpluie;cumulative amount of rain over the simulation period;mm;sc;real;0;0 +cprecip;cumulative water supply over the cropping season (precipitation + irrigation);mm;p;real;0;1 +cpreciptout;cumulative water supply over the simulation period (precipitation + irrigation);mm;sc;real;0;0 +Cr;amount of C in organic residues mixed with soil in the profhum layer;kg.ha-1;sc;real;0;0 +Cresiduprofil(1);amount of C in residues over the soil depth profhum in the residue type 1;kg.ha-1;sc;real;1;0 +Cresiduprofil(10);amount of C in residues over the soil depth profhum in the residue type 10;kg.ha-1;sc;real;10;0 +Cresiduprofil(2);amount of C in residues over the soil depth profhum in the residue type 2;kg.ha-1;sc;real;2;0 +Cresiduprofil(3);amount of C in residues over the soil depth profhum in the residue type 3;kg.ha-1;sc;real;3;0 +Cresiduprofil(4);amount of C in residues over the soil depth profhum in the residue type 4;kg.ha-1;sc;real;4;0 +Cresiduprofil(5);amount of C in residues over the soil depth profhum in the residue type 5;kg.ha-1;sc;real;5;0 +Cresiduprofil(6);amount of C in residues over the soil depth profhum in the residue type 6;kg.ha-1;sc;real;6;0 +Cresiduprofil(7);amount of C in residues over the soil depth profhum in the residue type 7;kg.ha-1;sc;real;7;0 +Cresiduprofil(8);amount of C in residues over the soil depth profhum in the residue type 8;kg.ha-1;sc;real;8;0 +Cresiduprofil(9);amount of C in residues over the soil depth profhum in the residue type 9;kg.ha-1;sc;real;9;0 +crg;cumulative global radiation over the cropping season;MJ.m-2;p;real;0;1 +crgtout;cumulative global radiation over the simulation period;MJ.m-2;c;real;0;0 +Crprof;amount of C in deep organic residues mixed with soil (below the profhum depth);kg.ha-1;sc;real;0;0 +Crtout;total amount of C in organic residues present over the whole soil profile;kg.ha-1;sc;real;0;0 +CsurNrac;C/N ratio of living roots; g g-1;function;real;0;0 +CsurNracmort;C/N ratio of dead roots (cumulative); g g-1;function;real;0;0 +CsurNres_pature;C/N ratio of residues in case of pasture; g g-1;sc;real;0;0 +CsurNsol;C/N ratio of soil organic matter in the profhum layer; g g-1;soil;real;0;0 +ctairtout;cumulative air temperature (tair) over the simulation period;degreeC;c;real;0;0 +ctcult;cumulative crop temperature (tcult) over the cropping season;degreeC;p;real;0;1 +ctculttout;cumulative crop temperature (tcult) over the simulation period;degreeC;c;real;0;0 +ctetptout;cumulative potential evapotranspiration (pet) over the simulation period;mm;c;real;0;0 +ctmoy;cumulative air temperature over the cropping season;degreeC;p;real;0;1 +cum_et0;cumulative maximum evapotranspiration over the cropping season (eop+eos);mm;p;real;0;0 +cum_et0_from_lev;cumulative maximum evapotranspiration over the cropping season from germination or budbreak (eop+eos);mm;sc;real;0;0 +cum_immob;cumulative amount of N immobilised by the microbial biomass decomposing residues;kg.ha-1;sc;real;0;0 +cum_immob_positif;cumulative amount of N immobilised by the microbial biomass decomposing residues (positive value);kg.ha-1;sc;real;0;0 +cumlracz;cumulative length of active roots per soil surface;cm.cm-2;p;real;0;1 +cumraint;cumulative intercepted radiation;MJ.m-2;p;real;0;1 +cumrg;cumulative global radiation during the stage sowing-harvest;MJ.m-2;p;real;0;1 +cumvminh;daily amount of N mineralised from humus;kg.ha-1.d-1;soil;real;0;0 +cumvminr;daily amount of N mineralised from organic residues;kg.ha-1.d-1;soil;real;0;0 +da(1);bulk density of the layer 1 (recalculated by the model if codeDSTtass is 1);g.cm-3;soil;real;1;0 +da(2);bulk density of the layer 2 (recalculated by the model if codeDSTtass is 1);g.cm-3;soil;real;2;0 +date_irrigations(1);date of irrigation;julian day;sc;integer;1;0 +date_irrigations(10);date of irrigation;julian day;sc;integer;10;0 +date_irrigations(11);date of irrigation;julian day;sc;integer;11;0 +date_irrigations(12);date of irrigation;julian day;sc;integer;12;0 +date_irrigations(13);date of irrigation;julian day;sc;integer;13;0 +date_irrigations(14);date of irrigation;julian day;sc;integer;14;0 +date_irrigations(15);date of irrigation;julian day;sc;integer;15;0 +date_irrigations(16);date of irrigation;julian day;sc;integer;16;0 +date_irrigations(17);date of irrigation;julian day;sc;integer;17;0 +date_irrigations(18);date of irrigation;julian day;sc;integer;18;0 +date_irrigations(19);date of irrigation;julian day;sc;integer;19;0 +date_irrigations(2);date of irrigation;julian day;sc;integer;2;0 +date_irrigations(20);date of irrigation;julian day;sc;integer;20;0 +date_irrigations(21);date of irrigation;julian day;sc;integer;21;0 +date_irrigations(22);date of irrigation;julian day;sc;integer;22;0 +date_irrigations(23);date of irrigation;julian day;sc;integer;23;0 +date_irrigations(24);date of irrigation;julian day;sc;integer;24;0 +date_irrigations(25);date of irrigation;julian day;sc;integer;25;0 +date_irrigations(26);date of irrigation;julian day;sc;integer;26;0 +date_irrigations(27);date of irrigation;julian day;sc;integer;27;0 +date_irrigations(28);date of irrigation;julian day;sc;integer;28;0 +date_irrigations(29);date of irrigation;julian day;sc;integer;29;0 +date_irrigations(3);date of irrigation;julian day;sc;integer;3;0 +date_irrigations(30);date of irrigation;julian day;sc;integer;30;0 +date_irrigations(4);date of irrigation;julian day;sc;integer;4;0 +date_irrigations(5);date of irrigation;julian day;sc;integer;5;0 +date_irrigations(6);date of irrigation;julian day;sc;integer;6;0 +date_irrigations(7);date of irrigation;julian day;sc;integer;7;0 +date_irrigations(8);date of irrigation;julian day;sc;integer;8;0 +date_irrigations(9);date of irrigation;julian day;sc;integer;9;0 +day_after_begin_simul;number of days from the beginning of simulation;days;function;integer;0;0 +day_after_emergence;number of days after emergence;days;p;integer;0;1 +day_after_sowing;days after sowing or planting;days;sc;integer;0;0 +day_cut;cut day;julian day;p;integer;0;0 +DCbmulch;change in C amount in microbial biomass decomposing mulch between the beginning and the end of simulation;kg.ha-1;function;real;0;0 +DChumt;change in humified organic C in soil between beginning and end of simulation;kg.ha-1;function;real;0;0 +DCmulch;change in mulch C between the beginning and end of simulation;kg.ha-1;function;real;0;0 +DCr;change in C of organic residues between begining and end of simulation;kg.ha-1;function;real;0;0 +DCrprof;change in deep root C between the beginning and end of simulation;kg.ha-1;function;real;0;0 +deltai(n);daily increase in green leaf index per soil surface;m2.m-2.d-1;p;real;n;2 +deltaz;rate of deepening of the root front;cm.d-1;p;real;0;1 +demande;daily N requirement of the plant to maximise crop growth;kg.ha-1.d-1;p;real;0;2 +demandeper;daily N requirement of the perennial organs to maximise crop growth;kg.ha-1.d-1;p;real;0;2 +demanderac;daily N requirementof the roots to maximise crop growth;kg.ha-1.d-1;p;real;0;2 +demandetot;daily N requirement of the plant to maximise crop growth after susbtracting N fixation;kg.ha-1.d-1;p;real;0;0 +densite;actual sowing density;plants.m-2;p;real;0;1 +densiteequiv;equivalent plant density for the understorey crop;plants.m-2;p;real;0;1 +dfol;within the shape leaf density;m2.m-3;p;real;0;1 +diftemp1intercoupe;mean difference between crop and air temperatures during the vegetative phase (emergence - maximum LAI);degreeC;p;real;0;0 +diftemp2intercoupe;mean difference between crop and air temperatures during the reproductive phase (maximum LAI - maturity);degreeC;p;real;0;0 +dltags;daily growth rate of the plantlets;t.ha-1.d-1;p;real;0;2 +dltaisen;daily change in the senescent leaf area index;m2.m-2.d-1;p;real;0;2 +dltams(n);daily growth rate of the plant;t.ha-1.d-1;p;real;n;2 +dltamsen;daily senescence rate of the plant;t.ha-1.d-1;p;real;0;2 +dltaremobil;daily amount of perennial reserves remobilised;t.ha-1.d-1;p;real;0;2 +dltaremobilN;daily amount of perennial N reserves remobilised;kg.ha-1.d-1;p;real;0;2 +dltmsrac_plante;pour sorties ArchiSTICS: biomasse journaliere allouee aux racines; g.m2.sol;p;real;0;0 +DNbmulch;change in biomass N associated with the mulch between beginning and end of simulation;kg.ha-1;function;real;0;0 +DNhumt;change in humified organic N in soil between beginning and end of simulation;kg.ha-1;function;real;0;0 +DNmulch;change in mulch N between beginning and end of simulation;kg.ha-1;function;real;0;0 +DNr;change in N of organic residues between begining and end of simulation;kg.ha-1;function;real;0;0 +DNrprof;change in N of deep dead roots between begining and end of simulation;kg.ha-1;function;real;0;0 +DQNtot2;change in N content of the two plants (aerial + root + perennial organs) between beginning and end of simulation;kg.ha-1;sc;real;0;0 +drain;daily amount of water drained at the base of the soil profile;mm.d-1;sc;real;0;0 +drain_from_lev;cumulative amount of water drained at the base of the soil profile during the crop cycle (emergence or budbreak to harvest);mm;sc;real;0;0 +drain_from_plt;cumulative amount of water drained at the base of the soil profile during the crop cycle (planting to harvest);mm;sc;real;0;0 +drat;cumulative amount of water drained at the base of the soil profile during the simulation period;mm;sc;real;0;0 +drlsenmortalle;root biomass corresponding to dead tillers;t.ha-1.d-1;p;real;0;0 +DSMN;change in soil mineral N between beginning and end of simulation;kg.ha-1;function;real;0;0 +DSOC;change in soil organic C (without residues) between beginning and end of simulation;kg.ha-1;function;real;0;0 +DSOCtot;change in total soil organic C (with residues) between beginning and end of simulation;kg.ha-1;function;real;0;0 +DSON;change in soil organic N (without residues) between beginning and end of simulation;kg.ha-1;function;real;0;0 +DSONtot;change in total soil organic N (with residues) between beginning and end of simulation;kg.ha-1;function;real;0;0 +DSTN;change in total soil N (mineral + organic) between beginning and end of simulation;kg.ha-1;function;real;0;0 +dtj(n);thermal time for root growth;degreeC.d;p;real;n;0 +dureehumec;number of hours which are wet (rainy days or days when tcult < dew point);hour;c;real;0;0 +dureeRH;number of night hours during which relative humidity exceeds a 90% threshold;hour;c;real;0;0 +durvie(n);actual life span of the leaf surface;degreeC;p;real;n;3 +eai;equilvalent leaf area for ear;m2.m-2;p;real;0;2 +ebmax;maximum value of radiation use efficiency;cg.MJ-1;p;real;0;1 +ebmax_gr; Maximum radiation use efficiency during the vegetative stage (AMF-DRP);g MJ-1;function;real;0;0 +Edirect;daily amount of water evaporated by the soil + intercepted by leaves and mulch;mm.d-1;sc;real;0;0 +efda;reduction factor on root growth due to physical constraint (through bulk density);0-1;p;real;0;0 +efdensite;density factor on leaf area growth;0-1;p;real;0;0 +efdensite_rac;density factor on root growth;0-1;p;real;0;0 +ef_elongation;Shoot elongation effect due to plant shading;0-1;p;real;n;0 +efNrac_mean;reduction factor on root growth rate due to mineral N concentration;0-1;p;real;0;0 +em_N2O;daily amount of N2O-N emitted from soil;kg.ha-1.d-1;sc;real;0;0 +em_N2Oden;daily amount of N2O-N emitted from soil by denitrification;kg.ha-1.d-1;sc;real;0;0 +em_N2Onit;daily amount of N2O-N emitted from soil by nitrification;kg.ha-1.d-1;sc;real;0;0 +Emd;daily amount of water directly evaporated after leaves interception;mm.d-1;p;real;0;1 +emulch;daily amount of water directly evaporated after mulch interception;mm.d-1;sc;real;0;0 +eo;intermediary variable for the computation of evapotranspiration;mm.d-1;sc;real;0;0 +eop;daily maximum transpiration flux;mm.d-1;p;real;0;2 +eos;daily maximum evaporation flux;mm.d-1;sc;real;0;0 +ep;daily actual transpiration flux;mm.d-1;p;real;0;2 +epc_recal(1);thickness of the soil layer 1 (recalculated by the model if codeDSTtass is 1);cm;soil;real;1;0 +epc_recal(2);thickness of the soil layer 2 (recalculated by the model if codeDSTtass is 1);cm;soil;real;2;0 +epc_recal(3);thickness of the soil layer 3 (recalculated by the model if codeDSTtass is 1);cm;soil;real;3;0 +epc_recal(4);thickness of the soil layer 4 (recalculated by the model if codeDSTtass is 1);cm;soil;real;4;0 +epc_recal(5);thickness of the soil layer 5 (recalculated by the model if codeDSTtass is 1);cm;soil;real;5;0 +epsib;radiation use efficiency;t.ha-1.MJ-1.m2;p;real;0;2 +esol;daily actual soil evaporation flux;mm.d-1;sc;real;0;0 +et;daily evapotranspiration (esol + ep);mm.d-1;sc;real;0;0 +et0;daily maximun evapotranspiration flux (transpiration + soil evaporation);mm;p;real;0;0 +etm;daily maximum evapotranspiration (esol + eop);mm.d-1;sc;real;0;0 +etm_etr1moy;etm/etr ratio on the vegetative phase;0-1;p;real;0;1 +etm_etr2moy;etm/etr ratio on the reproductive phase;0-1;p;real;0;1 +etpp(n);daily potential evapotranspiration as given by the formula of Penman;mm.d-1;c;real;n;0 +etr_etm1moy;etr/etm ratio on the vegetative phase;0-1;p;real;0;1 +etr_etm2moy;etr/etm ratio on the reproductive phase;0-1;p;real;0;1 +exces(1);amount of water in the macroporosity of the layer 1;mm;sc;real;1;0 +exces(2);amount of water in the macroporosity of the layer 2;mm;sc;real;2;0 +exces(3);amount of water in the macroporosity of the layer 3;mm;sc;real;3;0 +exces(4);amount of water in the macroporosity of the layer 4;mm;sc;real;4;0 +exces(5);amount of water in the macroporosity of the layer 5;mm;sc;real;5;0 +exobiom;reduction factor on biomass growth due to water excess;0-1;p;real;0;1 +exofac;waterlogging index;0-1;p;real;0;1 +exofac1moy;mean value of the waterlogging index during the vegetative stage (emergence - fruit establishment);0-1;p;real;0;1 +exofac2moy;mean value of the waterlogging index during the reproductive stage (fruit establishment - maturity);0-1;p;real;0;1 +exolai;reduction factor on leaf growth due to water excess;0-1;p;real;0;1 +fapar;proportion of the radiation intercepted;0-1;p;real;0;2 +fco2;specie-dependant CO2 effect on radiation use efficiency;SD;p;real;0;0 +fco2s;specie-dependant CO2 effect onstomate closure;SD;p;real;0;0 +fgelflo;reduction factor on the number of fruits due to frost;0-1;p;real;0;1 +fixmaxvar;maximal rate of BNF (symbiotic fixation);kg.ha-1.d-1;p;real;0;2 +fixpot;potential rate of BNF (symbiotic fixation);kg.ha-1.d-1;p;real;0;2 +fixreel;actual rate of BNF (symbiotic fixation);kg.ha-1.d-1;p;real;0;2 +flurac;daily amount of N taken up by the plant when N uptake is limited by the plant capacity absorption;kg.ha-1.d-1;p;real;0;1 +flusol;daily amount of N taken up by the plant when N uptake is limited by the transfer from soil to root;kg.ha-1.d-1;p;real;0;1 +fpari;radiation effect on conversion efficiency;g.MJ-1;p;real;0;1 +fpari_gr;radiation factor on the calculation of conversion efficiency;g MJ-1;function;real;0;0 +fpft;daily sink capacity of fruits;g.m-2.d-1;p;real;0;2 +fpv(n);daily sink capacity of growing leaves;g.m-2.d-1;p;real;n;2 +FsNH3;daily amount of NH3-N emitted from soil by volatilisation;micro g.m-2.d-1;sc;real;0;0 +fstressgel;reduction factor on leaf growth due to frost;0-1;p;real;0;1 +ftemp;reduction factor on biomass growth due to temperature-related epsibmax;0-1;p;real;0;1 +fxa;reduction factor on BNF (symbiotic fixation) due to soil anoxia;0-1;sc;real;0;0 +fxn;reduction factor on BNF (symbiotic fixation) due to mineral N concentration;0-1;sc;real;0;0 +fxt;reduction factor on BNF (symbiotic fixation) due to soil temperature;0-1;sc;real;0;0 +fxw;reduction factor on BNF (symbiotic fixation) due to soil water content;0-1;sc;real;0;0 +gel1;stress factor on leaves damaged by frost before amf stage (end of juvenile phase );0-1;p;real;0;0 +gel1_percent;proportion of leaves damaged by frost before amf stage (end of juvenile phase );%;function;real;0;0 +gel2;stress factor on leaves damaged by frost after amf stage (end of juvenile phase );0-1;p;real;0;0 +gel2_percent;proportion of leaves damaged by frost after amf stage (end of juvenile phase );%;function;real;0;0 +gel3;stress factor on flowers or fruits damaged by frost;0-1;p;real;0;0 +gel3_percent;proportion of flowers or fruits damaged by frost;%;function;real;0;0 +GHG;Greenhouse Gas emission (CO2 + N2O) expressed in CO2eq/ha =Qem_N2O*44/28*296 -DSOC*44/12;kg.ha-1;sc;real;0;0 +grain_dry_weight_mg;Grain unit dry weight;mg;p;real;0;0 +H2Orec;water content of harvested organs;0-1;p;real;0;2 +H2Orec_percent;water content of harvested organs;% fresh weight;function;real;0;2 +hauteur;height of canopy;m;p;real;0;2 +HI_C;harvest index for carbon;0-1;function;real;0;0 +HI_N;harvest index for nitrogen;0-1;function;real;0;0 +Hmax;maximum height of water table between drains;cm;soil;real;0;0 +hnappe;height of water table affecting plant growth;cm;soil;real;0;0 +Hpb;minimum depth of perched water table;cm;soil;real;0;0 +Hph;maximum depth of perched water table;cm;soil;real;0;0 +HR(1);water content of the soil layer 1;% dry weight;sc;real;1;0 +HR(2);water content of the soil layer 2;% dry weight;sc;real;2;0 +HR(3);water content of the soil layer 3;% dry weight;sc;real;3;0 +HR(4);water content of the soil layer 4;% dry weight;sc;real;4;0 +HR(5);water content of the soil layer 5;% dry weight;sc;real;5;0 +HR_mm(1);water content of the soil layer 1;mm;sc;real;1;0 +HR_mm(2);water content of the soil layer 2;mm;sc;real;2;0 +HR_mm(3);water content of the soil layer 3;mm;sc;real;3;0 +HR_mm(4);water content of the soil layer 4;mm;sc;real;4;0 +HR_mm(5);water content of the soil layer 5;mm;sc;real;5;0 +HR_mm_1_30;water content of the layer 1-30 cm;mm;sc;real;0;0 +HR_mm_31_60;water content of the layer 31-60 cm;mm;sc;real;0;0 +HR_mm_61_90;water content of the layer 61-90 cm;mm;sc;real;0;0 +HR_vol_1_10;water content of the layer 1-10 cm;mm-3.mm-3;sc;real;0;0 +HR_vol_1_30;water content of the layer 1-30 cm (table);mm-3.mm-3;sc;real;0;0 +HR_vol_121_150;water content of the layer 121-150 cm (table);mm-3.mm-3;sc;real;0;0 +HR_vol_151_180;water content of the layer 151-180 cm (table);mm-3.mm-3;sc;real;0;0 +HR_vol_31_60;water content of the layer 31-60 cm (table);mm-3.mm-3;sc;real;0;0 +HR_vol_61_90;water content of the layer 61-90 cm (table);mm-3.mm-3;sc;real;0;0 +HR_vol_91_120;water content of the layer 91-120 cm (table);mm-3.mm-3;sc;real;0;0 +huile;oil content of harvested organs;0-1;p;real;0;2 +huile_percent;oil content of harvested organs;% fresh weight;function;real;0;2 +humair;air moisture content;0-1;c;real;0;0 +humair_percent;air moisture content;% saturation;c;real;0;0 +humidite;air moisture content in the canopy;0-1;sc;real;0;0 +humidite_percent;air moisture content in the canopy;% saturation;sc;real;0;0 +humirac_mean;reduction factor on root growth due to soil water content (mean value over the root profile);0-1;p;real;0;1 +hur_10_vol;soil water content in the soil at 10 cm ;cm/cm;sc;real;0;0 +husup_by_horizon(1);drainage under the horizon 1;mm;sc;real;1;0 +husup_by_horizon(2);drainage under the horizon 2;mm;sc;real;2;0 +husup_by_horizon(3);drainage under the horizon 3;mm;sc;real;3;0 +husup_by_horizon(4);drainage under the horizon 4;mm;sc;real;4;0 +husup_by_horizon(5);drainage under the horizon 5;mm;sc;real;5;0 +husup_under_profmes;drainage under the depth of measurement profmes;mm;sc;real;0;0 +iamfs;date of amf stage (maximum acceleration of leaf growth, end of juvenile phase );julian day;p;integer;0;1 +idebdess;date of onset of water dynamics in harvested organs;julian day;p;integer;0;1 +idebdorms;date of entry into dormancy;julian day;p;integer;0;1 +idrps;starting date of filling of harvested organs;julian day;p;integer;0;1 +ifindorms;date of emergence from dormancy;julian day;p;integer;0;1 +iflos;date of flowering;julian day;p;integer;0;1 +iflos_minus_150;date of flowering minus150 degrees day;julian day;p;integer;0;1 +iflos_plus_150;date of flowering plus 150 degrees day;julian day;p;integer;0;1 +igers;date of germination;julian day;p;integer;0;1 +ilans;date of lan stage (leaf index nil);julian day;p;integer;0;1 +ilaxs;date of lax stage (leaf index maximum);julian day;p;integer;0;1 +ilevs;date of emergence;julian day;p;integer;0;1 +imats;date of start of physiological maturity;julian day;p;integer;0;1 +imontaisons;date of start of stem elongation;julian day;p;integer;0;0 +infil_recal(1);infiltrability parameter at the base of the layer 1;mm.d-1;soil;real;1;0 +infil_recal(2);infiltrability parameter at the base of the layer 2;mm.d-1;soil;real;2;0 +infil_recal(3);infiltrability parameter at the base of the layer 3;mm.d-1;soil;real;3;0 +infil_recal(4);infiltrability parameter at the base of the layer 4;mm.d-1;soil;real;4;0 +infil_recal(5);infiltrability parameter at the base of the layer 5;mm.d-1;soil;real;5;0 +init_H2O_balance;total initial water balance over the simulation period;mm;function;real;0;0 +final_H2O_balance;total final water balance over the simulation period;mm;function;real;0;0 +init_plant_N_balance;total initial plant nitrogen balance over the simulation period;kg.ha-1;function;real;0;0 +final_plant_N_balance;total final plant nitrogen balance over the simulation period;kg.ha-1;function;real;0;0 +init_soil_mineral_N_balance;total initial soil mineral nitrogen balance over the simulation period;kg.ha-1;function;real;0;0 +final_soil_mineral_N_balance;total final soil mineral nitrogen balance over the simulation period;kg.ha-1;function;real;0;0 +init_soil_organic_N_balance;total initial soil organic nitrogen balance over the simulation period;kg.ha-1;function;real;0;0 +final_soil_organic_N_balance;total final soil organic nitrogen balance over the simulation period;kg.ha-1;function;real;0;0 +init_soil_organic_C_balance;total initial soil organic carbon balance over the simulation period;kg.ha-1;function;real;0;0 +final_soil_organic_C_balance;total final soil organic carbon balance over the simulation period;kg.ha-1;function;real;0;0 +inn;nitrogen nutrition index (NNI);0-2;p;real;0;2 +inn1intercoupe;average NNI during the cut (cut crop vegetative phase: emergence to maximum LAI);0-2;p;real;0;0 +inn1moy;average NNI during the vegetative stage;0-2;p;real;0;1 +inn2intercoupe;average NNI during the cut (cut crop reproductive phase: maximum LAI to maturity);0-2;p;real;0;0 +inn2moy;average NNI during the reproductive stage;0-2;p;real;0;1 +innlai;reduction factor on leaf growth due to NNI (nitrogen deficiency);innmin to 1;p;real;0;2 +inns;reduction factor on biomass growth due to NNI (nitrogen deficiency);innmin to 1;p;real;0;2 +innsenes;nitrogen stress index affecting leaves death;innmin to 1;p;real;0;2 +inous;ending date for setting of harvested organs;julian day;p;real;0;1 +intermulch;daily amount of water intercepted by the mulch (vegetal);mm.d-1;sc;real;0;0 +interpluie;daily amount of water intercepted by leaves;mm.d-1;p;real;0;2 +iplts;date of sowing or planting;julian day;p;integer;0;1 +irazo(n);nitrogen harvest index;0-1;p;real;n;2 +ircarb(n);carbon harvest index;0-1;p;real;n;2 +irecs;date of harvest (first if several);julian day;p;integer;0;1 +irrigjN;daily amount of mineral N added by irrigation;kg.ha-1.d-1;sc;real;0;0 +irrigN;cumulative amount of mineral N added by irrigation;kg.ha-1;sc;real;0;0 +isens;date of begninning leaf senescence stage;julian day;p;integer;0;1 +is_dominant;1 if the plant is dominant, 0 otherwise;code 0/1;p;logical;0;0 +izrac;water excess stress index on roots;0-1;p;real;0;1 +jjul;julian day of the year corresponding to the current simulation day (resets each year);d;sc;integer;0;0 +lai(n);leaf area index (table);m2.m-2;p;real;n;2 +lai_mx_av_cut;LAI before cut (for cut crops , for others = lai(n) );SD;p;real;0;1 +laimax;maximum leaf area index;m2.m-2;p;real;0;2 +laisen(n);leaf area index of senescent leaves (table);m2.m-2;p;real;n;2 +largeur;width of the plant shape;m;p;real;0;2 +leaching_from_lev;cumulative amount of NO3-N leached at the base of the soil profile during the crop cycle ( emergence or budbreak to harvest);kg.ha-1;sc;real;0;0 +leaching_from_plt;cumulative amount of NO3-N leached at the base of the soil profile during the crop cycle (planting to harvest);kg.ha-1;sc;real;0;0 +leai;Leaf+ear area index = lai +eai;m2.m-2;p;real;0;2 +lessiv;daily amount of NO3-N leached at the base of the soil profile;kg.ha-1.d-1;sc;real;0;0 +lracf(1);root length density of fine roots in layer 1;cm.cm-3;p;real;1;0 +lracf(2);root length density of fine roots in layer 2;cm.cm-3;p;real;2;0 +lracf(3);root length density of fine roots in layer 3;cm.cm-3;p;real;3;0 +lracf(4);root length density of fine roots in layer 4;cm.cm-3;p;real;4;0 +lracf(5);root length density of fine roots in layer 5;cm.cm-3;p;real;5;0 +lracg(1);root length density of coarse roots in layer 1;cm.cm-3;p;real;1;0 +lracg(2);root length density of coarse roots in layer 2;cm.cm-3;p;real;2;0 +lracg(3);root length density of coarse roots in layer 3;cm.cm-3;p;real;3;0 +lracg(4);root length density of coarse roots in layer 4;cm.cm-3;p;real;4;0 +lracg(5);root length density of coarse roots in layer 5;cm.cm-3;p;real;5;0 +LRACH(1);root length density in soil layer 1;cm.cm-3;p;real;1;0 +LRACH(2);root length density in soil layer 2;cm.cm-3;p;real;2;0 +LRACH(3);root length density in soil layer 3;cm.cm-3;p;real;3;0 +LRACH(4);root length density in soil layer 4;cm.cm-3;p;real;4;0 +LRACH(5);root length density in soil layer 5;cm.cm-3;p;real;5;0 +lracsentotf;cumulative length of senescent roots;cm root.cm-2 soil;p;real;0;1 +lracsentotg;cumulative length of senescent roots;cm root.cm-2 soil;p;real;0;1 +mabois;biomass removed by pruning;t.ha-1;p;real;0;2 +maenfruit;biomass of harvested organ envelops;t.ha-1;p;real;0;2 +mafauche;biomass of forage cuts;t.ha-1;p;real;0;0 +mafauchetot;cumulative biomass of forage cuts;t.ha-1;p;real;0;0 +mafeuil;biomass of leaves;t.ha-1;p;real;0;2 +mafeuil_kg_ha;Dry matter of leaves;kg.ha-1;function;real;0;0 +mafeuiljaune;biomass of yellow leaves;t.ha-1;p;real;0;2 +mafeuiltombe;biomass of fallen leaves;t.ha-1;p;real;0;2 +mafeuiltombefauche;biomass of fallen leaves between two cuts;t.ha-1;p;real;0;1 +mafeuilverte;biomass of green leaves;t.ha-1;p;real;0;2 +mafou;biomass of harvested organs for cut crops;t.ha-1;p;real;0;1 +mafrais;aboveground fresh matter;t.ha-1;p;real;0;2 +mafruit;biomass of harvested organs;t.ha-1;function;real;0;1 +mafruit_kg_ha;Dry matter of harvested organs;kg.ha-1;function;real;0;0 +maperenne;biomass of perennial organs;t.ha-1;p;real;0;2 +maperennemort;biomass of dead perennial organs;t.ha-1;p;real;0;2 +masec(n);biomass of aboveground plant (table);t.ha-1;p;real;n;2 +masec_kg_ha;Aboveground dry matter;kg.ha-1;function;real;0;0 +masec_mx_av_cut;Aboveground dry matter before cut(for cut crops, for others = masec(n) );t.ha-1;p;real;0;1 +masecneo;biomass of newly-formed organs;t.ha-1;p;real;0;2 +masecnp;biomass of aerials and non perennial organs;t.ha-1;p;real;n;2 +masectot;total plant biomass (aerials + roots + perennial organs);t.ha-1;p;real;0;1 +masecveg;biomass of vegetative organs;t.ha-1;p;real;0;2 +matigestruc;biomass of stems (only structural parts);t.ha-1;p;real;0;2 +matigestruc_kg_ha;Dry matter of stems (only structural parts);kg.ha-1;function;real;0;0 +matuber;biomass of tuber (harvested organs, only calculated for sugarbeet);t.ha-1;p;real;0;1 +mean_swfac_flo_p_m_150;swfac mean on the period flowering minus 150 degrees day to flowering plus 150 degrees days;0-1;p;real;0;1 +mortalle;daily number of dying tillers;d-1;p;real;0;1 +mortmasec;cumulative biomass of dead tillers;t.ha-1;p;real;0;1 +mortreserve;biomass of reserves corresponding to dead tillers;t.ha-1.d-1;p;real;0;1 +mouillmulch;amount of water retained by the mulch;mm;sc;real;0;0 +MSexporte;cumulative amount of harvested biomass;t.ha-1;p;real;0;1 +msjaune;senescent biomass of the plant;t.ha-1;p;real;0;2 +msneojaune;newly-formed senescent biomass;t.ha-1;p;real;0;2 +msrac(n);biomass of roots;t.ha-1;p;real;n;0 +msracf(1);biomass of fine roots in layer 1;t.ha-1;p;real;1;0 +msracf(2);biomass of fine roots in layer 2;t.ha-1;p;real;2;0 +msracf(3);biomass of fine roots in layer 3;t.ha-1;p;real;3;0 +msracf(4);biomass of fine roots in layer 4;t.ha-1;p;real;4;0 +msracf(5);biomass of fine roots in layer 5;t.ha-1;p;real;5;0 +msracg(1);biomass of coarse roots in layer 1;t.ha-1;p;real;1;0 +msracg(2);biomass of coarse roots in layer 2;t.ha-1;p;real;2;0 +msracg(3);biomass of coarse roots in layer 3;t.ha-1;p;real;3;0 +msracg(4);biomass of coarse roots in layer 4;t.ha-1;p;real;4;0 +msracg(5);biomass of coarse roots in layer 5;t.ha-1;p;real;5;0 +msracmort;Biomass of dead roots;t.ha-1;p;real;0;0 +msracmortf(1);cumulative biomass of dead fine roots in layer 1;t.ha-1;p;real;1;0 +msracmortf(2);cumulative biomass of dead fine roots in layer 2;t.ha-1;p;real;2;0 +msracmortf(3);cumulative biomass of dead fine roots in layer 3;t.ha-1;p;real;3;0 +msracmortf(4);cumulative biomass of dead fine roots in layer 4;t.ha-1;p;real;4;0 +msracmortf(5);cumulative biomass of dead fine roots in layer 5;t.ha-1;p;real;5;0 +msracmortg(1);cumulative biomass of dead coarse roots in layer 1;t.ha-1;p;real;1;0 +msracmortg(2);cumulative biomass of dead coarse roots in layer 2;t.ha-1;p;real;2;0 +msracmortg(3);cumulative biomass of dead coarse roots in layer 3;t.ha-1;p;real;3;0 +msracmortg(4);cumulative biomass of dead coarse roots in layer 4;t.ha-1;p;real;4;0 +msracmortg(5);cumulative biomass of dead coarse roots in layer 5;t.ha-1;p;real;5;0 +msrec_fou;biomass of harvested forage;t.ha-1;p;real;0;1 +msrec_fou_coupe;Dry matter of harvested organs for forages at cutting;t.ha-1;p;real;0;0 +msrec_fou_tot;Dry matter of harvestable organs for forages cumulated over the USM ;t.ha-1;p;real;0;0 +MSrecycle;cumulative amount of biomass returned to soil (unexported at harvest + fallen leaves);t.ha-1;p;real;0;1 +msresjaune;senescent residual dry matter;t.ha-1;p;real;0;2 +mstot;biomass of whole plant (aerial + root + perennial organs);t.ha-1;p;real;0;0 +N_mineralisation;cumulative amount of N mineralized from humus and organic residues;kg.ha-1;sc;real;0;0 +n_tot_irrigations;total number of rrigations;SD;sc;integer;0;0 +N_volatilisation;cumulative amount of N volatilised from fertilizer and organic inputs;kg.ha-1;soil;real;0;0 +Nb;amount of N in the microbial biomass decomposing organic residues mixed with soil;kg.ha-1;sc;real;0;0 +nb_days_frost_amf_120;number of days of tcultmin< tdebgel from amf stage to amf+120 degrees day;d;p;integer;0;1 +nb_days_humair_gt_90_percent1;number of days when humair_percent >=90% between amf and lax;days;sc;integer;0;0 +nb_days_humair_gt_90_percent2;number of days when humair_percent >=90% between lax and drp;days;sc;integer;0;0 +nbfeuille;number of leaves on main stem;SD;p;integer;0;1 +nbinflo_recal;number of inflorescences per plant;SD;function;real;0;1 +nbj0remp;number of shrivelling days;d;p;integer;0;1 +nbjechaudage;number of shrivelling days between lax and rec;d;c;integer;0;0 +nbjgel;number of frosting days active on the plant;d;p;integer;0;1 +nbjpourdecirecolte;number of days until harvest is launched when it is postponed by the harvest decision option;d;p;integer;0;1 +nbjpourdecisemis;number of days until sowing is launched when it is postponed by the sowing decision option;d;p;integer;0;1 +Nbmulch;amount of N in microbial biomass decomposing the decomposable mulch;kg.ha-1;sc;real;0;0 +NCbio;N/C ratio of biomass decomposing organic residues;SD;sc;real;0;0 +Ndenit;daily denitrification rate in soil (if option denitrification is activated);kg.ha-1.d-1;soil;real;0;0 +Ndfa;proportion of total plant N issued from N fixation;0-1;p;real;0;0 +Nexporte;cumulative amount of N removed by crop harvests;kg.ha-1;p;real;0;1 +nfruit(1);number of fruits in box 1;SD;p;real;1;2 +nfruit(2);number of fruits in box 2;SD;p;real;2;2 +nfruit(3);number of fruits in box 3;SD;p;real;3;2 +nfruit(4);number of fruits in box 4;SD;p;real;4;2 +nfruit(5);number of fruits in box 5;SD;p;real;5;2 +nfruit(nboite);number of fruits in last box;SD;function;real;0;2 +nfruit(nboite-1);number of fruits in last but one box;SD;function;real;0;2 +nfruitnou;number of set fruits;fruits.m-2;p;real;0;2 +Nhuma;amount of N in active soil organic matter;kg.ha-1;sc;real;0;0 +Nhumi;amount of N in inert soil organic matter;kg.ha-1;sc;real;0;0 +Nhumt;amount of N in humus soil organic matter (active + inert fractions);kg.ha-1;sc;real;0;0 +nit_1_30;amount of NO3-N in the soil layer 1 to 30 cm;kg.ha-1;sc;real;0;0 +nit_31_60;amount of NO3-N in the soil layer 31 to 60 cm;kg.ha-1;sc;real;0;0 +nit_61_90;amount of NO3-N in the soil layer 61 to 90 cm;kg.ha-1;sc;real;0;0 +soilN_rootdepth;amount of NO3-N in soil in the maximum root depth;kg.ha-1;sc;real;0;0 +nitetcult(n);number of iterations to calculate tcult;SD;c;integer;n;0 +nitrifj;daily nitrification rate in soil (if option nitrification is activated);kg.ha-1;soil;real;0;0 +Nmineral_from_lev;cumulative amount of N mineralized during the crop cycle ( emergence or budbreak-harvest);kg.ha-1;sc;real;0;0 +Nmineral_from_plt;cumulative amount of N mineralized during the crop cycle (sowing-harvest);kg.ha-1;sc;real;0;0 +Nmulch;amount of N in the plant mulch;kg.ha-1;sc;real;0;0 +Nmulchdec;amount of N in the decomposable mulch;kg.ha-1;sc;real;0;0 +Nmulchnd;amount of N in the non decomposable mulch;kg.ha-1;sc;real;0;0 +Nnondec(1);amount of N in the undecomposable mulch derived from residues type 1;kg.ha-1;sc;real;1;0 +Nnondec(10);amount of N in the undecomposable mulch derived from residues type 10;kg.ha-1;sc;real;10;0 +Nnondec(2);amount of N in the undecomposable mulch derived from residues type 2;kg.ha-1;sc;real;2;0 +Nnondec(3);amount of N in the undecomposable mulch derived from residues type 3;kg.ha-1;sc;real;3;0 +Nnondec(4);amount of N in the undecomposable mulch derived from residues type 4;kg.ha-1;sc;real;4;0 +Nnondec(5);amount of N in the undecomposable mulch derived from residues type 5;kg.ha-1;sc;real;5;0 +Nnondec(6);amount of N in the undecomposable mulch derived from residues type 6;kg.ha-1;sc;real;6;0 +Nnondec(7);amount of N in the undecomposable mulch derived from residues type 7;kg.ha-1;sc;real;7;0 +Nnondec(8);amount of N in the undecomposable mulch derived from residues type 8;kg.ha-1;sc;real;8;0 +Nnondec(9);amount of N in the undecomposable mulch derived from residues type 9;kg.ha-1;sc;real;9;0 +nodn;reduction factor on nodulation establishment (potential BNF) due to mineral N stress;0-1;sc;real;0;0 +Norgeng;daily amount of N immobilized from fertiliser;kg.ha-1.d-1;soil;real;0;0 +Nr;amount of N in the decomposing organic residues mixed with soil;kg.ha-1;sc;real;0;0 +Nrecycle;cumulative amount of N returned to soil (unexported at harvest + fallen leaves);kg.ha-1;p;real;0;1 +Nresiduprofil(1);amount of N in organic residues over the profhum depth, derived from residues type 1;kg.ha-1;sc;real;1;0 +Nresiduprofil(10);amount of N in organic residues over the profhum depth, derived from residues type 10;kg.ha-1;sc;real;10;0 +Nresiduprofil(2);amount of N in organic residues over the profhum depth, derived from residues type 2;kg.ha-1;sc;real;2;0 +Nresiduprofil(3);amount of N in organic residues over the profhum depth, derived from residues type 3;kg.ha-1;sc;real;3;0 +Nresiduprofil(4);amount of N in organic residues over the profhum depth, derived from residues type 4;kg.ha-1;sc;real;4;0 +Nresiduprofil(5);amount of N in organic residues over the profhum depth, derived from residues type 5;kg.ha-1;sc;real;5;0 +Nresiduprofil(6);amount of N in organic residues over the profhum depth, derived from residues type 6;kg.ha-1;sc;real;6;0 +Nresiduprofil(7);amount of N in organic residues over the profhum depth, derived from residues type 7;kg.ha-1;sc;real;7;0 +Nresiduprofil(8);amount of N in organic residues over the profhum depth, derived from residues type 8;kg.ha-1;sc;real;8;0 +Nresiduprofil(9);amount of N in organic residues over the profhum depth, derived from residues type 9;kg.ha-1;sc;real;9;0 +Nrprof;amount of N in deep organic residues mixed with soil (below the profhum depth);kg.ha-1;sc;real;0;0 +Nrtout;total amount of N in organic residues present over the whole soil profile;kg.ha-1;sc;real;0;0 +Nsurplus;Difference between N inputs and outputs to the soil, including organic fertilizer inputs;kg.ha-1;sc;real;0;0 +Nsurplus_min;Difference between N inputs and outputs to the soil, without organic fertilizer inputs;kg.ha-1;sc;real;0;0 +numcoupe;cut number;SD;p;integer;0;1 +numcult;crop season number;SD;sc;integer;0;0 +Nvolat_from_lev;cumulative amount of N volatilised during the crop cycle( emergence or budbreak-harvest);kg.ha-1;sc;real;0;0 +Nvolat_from_plt;cumulative amount of N volatilised during the crop cycle (planting-harvest);kg.ha-1;sc;real;0;0 +Nvoleng;daily amount of N volatilised from fertiliser;kg.ha-1.d-1;soil;real;0;0 +Nvolorg;daily amount of N volatilised from organic inputs;kg.ha-1.d-1;soil;real;0;0 +offrenod;daily amount of N fixed symbiotically (BNF);kg.ha-1.d-1;p;real;0;2 +p1000grain;1000 grains weight (dry weight);g;function;real;0;1 +pdsfruit(1);weight of fruits in box 1;g.m-2;p;real;1;2 +pdsfruit(2);weight of fruits in box 2;g.m-2;p;real;2;2 +pdsfruit(3);weight of fruits in box 3;g.m-2;p;real;3;2 +pdsfruit(4);weight of fruits in box 4;g.m-2;p;real;4;2 +pdsfruit(5);weight of fruits in box 5;g.m-2;p;real;5;2 +pdsfruit(nboite);weight of fruits in last box;g.m-2;function;real;0;2 +pdsfruit(nboite-1);weight of fruits in last but one box;g.m-2;function;real;0;2 +pdsfruitfrais;weight of fresh fruits;g.m-2;p;real;0;2 +penfruit;ratio of fruit envelops to plant biomass;0-1;p;real;0;2 +pfeuil(n);ratio of leaves to plant biomass;0-1;p;real;n;2 +pfeuiljaune;ratio of yellow leaves to plant biomass;0-1;p;real;0;2 +pfeuilverte(n);ratio of green leaves to non-senescent plant biomass;0-1;p;real;n;2 +phoi;photoperiod;hour;c;real;0;0 +pHvol;pH of soil surface as affected by organic residues application (slurry);SD;soil;real;0;0 +pousfruit;number of fruits transferred from one box to the next;SD;p;real;0;2 +poussracmoy;mean reduction factor on the root growth due to soil constraints (option true density);0-1;p;real;0;1 +precip;daily amount of water added to soil (precipitation + irrigation - mulch interception - runoff at the surface);mm.d-1;sc;real;0;0 +precipjN;daily amount of mineral N added to soil due to precipitation;kg.ha-1.d-1;sc;real;0;0 +precipN;cumulative amount of mineral N added to soil due to precipitation;kg.ha-1;sc;real;0;0 +preciprec(n);recalculated daily precipitation;mm.d-1;c;real;n;0 +preserve;proportion of reserve in total plant biomass;0-1;p;real;0;2 +profexteau;average depth of water absorption by plant;cm;p;real;0;1 +profextN;average depth of N absorption by plant;cm;p;real;0;1 +profnappe;depth of water table;cm;soil;real;0;0 +psibase;predawn leaf water potential;MPa;p;real;0;1 +ptigestruc;proportion of structural stems in total plant biomass;0-1;p;real;0;2 +q_irrigations(1);amount of irrigation;mm;sc;real;1;0 +q_irrigations(10);amount of irrigation;mm;sc;real;10;0 +q_irrigations(11);amount of irrigation;mm;sc;real;11;0 +q_irrigations(12);amount of irrigation;mm;sc;real;12;0 +q_irrigations(13);amount of irrigation;mm;sc;real;13;0 +q_irrigations(14);amount of irrigation;mm;sc;real;14;0 +q_irrigations(15);amount of irrigation;mm;sc;real;15;0 +q_irrigations(16);amount of irrigation;mm;sc;real;16;0 +q_irrigations(17);amount of irrigation;mm;sc;real;17;0 +q_irrigations(18);amount of irrigation;mm;sc;real;18;0 +q_irrigations(19);amount of irrigation;mm;sc;real;19;0 +q_irrigations(2);amount of irrigation;mm;sc;real;2;0 +q_irrigations(20);amount of irrigation;mm;sc;real;20;0 +q_irrigations(21);amount of irrigation;mm;sc;real;21;0 +q_irrigations(22);amount of irrigation;mm;sc;real;22;0 +q_irrigations(23);amount of irrigation;mm;sc;real;23;0 +q_irrigations(24);amount of irrigation;mm;sc;real;24;0 +q_irrigations(25);amount of irrigation;mm;sc;real;25;0 +q_irrigations(26);amount of irrigation;mm;sc;real;26;0 +q_irrigations(27);amount of irrigation;mm;sc;real;27;0 +q_irrigations(28);amount of irrigation;mm;sc;real;28;0 +q_irrigations(29);amount of irrigation;mm;sc;real;29;0 +q_irrigations(3);amount of irrigation;mm;sc;real;3;0 +q_irrigations(30);amount of irrigation;mm;sc;real;30;0 +q_irrigations(4);amount of irrigation;mm;sc;real;4;0 +q_irrigations(5);amount of irrigation;mm;sc;real;5;0 +q_irrigations(6);amount of irrigation;mm;sc;real;6;0 +q_irrigations(7);amount of irrigation;mm;sc;real;7;0 +q_irrigations(8);amount of irrigation;mm;sc;real;8;0 +q_irrigations(9);amount of irrigation;mm;sc;real;9;0 +QCapp;cumulative amount of organic C added to soil;kg.ha-1;sc;real;0;0 +QCO2hum;cumulative amount of CO2-C emitted due to mineralisation of humus;kg.ha-1;sc;real;0;0 +QCO2mul;cumulative amount of CO2-C emitted due to mineralisation of residues in the mulch;kg.ha-1;sc;real;0;0 +QCO2res;cumulative amount of CO2-C emitted due to mineralisation of residues (including mulch);kg.ha-1;sc;real;0;0 +QCO2sol;cumulative amount of CO2-C emitted due to heterotrophic respiration (QCO2res + QCO2hum);kg.ha-1;sc;real;0;0 +QCperennemort;cumulative amount of C in dead perennial organs;kg.ha-1;p;real;0;2 +QCperennemort2;cumulative amount of C in dead perennial organs of the two plants;kg.ha-1;sc;real;0;0 +QCplantetombe;cumulative amount of C added to soil by fallen leaves due to senescence;kg.ha-1;p;real;0;2 +QCplantetombe2;cumulative amount of C added to soil by fallen leaves due to senescence for the two plants;kg.ha-1;sc;real;0;0 +QCprimed;cumulative amount of C mineralised by priming effect;kg.ha-1;sc;real;0;0 +QCrac;amount of C in living roots;kg.ha-1;p;real;0;1 +QCracmort;cumulative amount of C added to soil by dead roots;kg.ha-1;p;real;0;1 +QCracmort2;cumulative amount of C added to soil by dead roots of the two plants;kg.ha-1;sc;real;0;1 +QCresorg;cumulative amount of C added to soil through organic exogenous residues;kg.ha-1;sc;real;0;0 +QCressuite;cumulative amount of C added to soil due to aerial residues at harvest;kg.ha-1;p;real;0;1 +QCressuite2;cumulative amount of C added to soil due to aerial residues at harvest for the two plants;kg.ha-1;sc;real;0;1 +QCressuite_tot;cumulative amount of C added to soil by aerial residues from all harvests;t.ha-1;p;real;0;1 +QCressuite_tot2;cumulative amount of C added to soil by aerial residues from all harvests of the two plants;kg.ha-1;sc;real;0;1 +QCrogne;cumulative amount of C added to soil by fallen leaves due to trimming;kg.ha-1;p;real;0;0 +QCrogne2;cumulative amount of C added to soil by fallen leaves due to trimming of the two plants;kg.ha-1;sc;real;0;0 +Qdrain;water flow rate in mole drains;mm.d-1;soil;real;0;0 +Qdraincum;cumulative amount of water flowing in mole drains;mm;soil;real;0;0 +Qem_N2O;cumulative amount of N2O-N emitted from soil;kg.ha-1;sc;real;0;0 +Qem_N2Oden;cumulative amount of N2O-N emitted from soil by denitrification;kg.ha-1;sc;real;0;0 +Qem_N2Onit;cumulative amount of N2O-N emitted from soil by nitrification;kg.ha-1;sc;real;0;0 +qexport;biomass exported out of the field;t.ha-1;p;real;0;0 +Qfix;amount of N fixed symbiotically (BNF) between two cuts;kg.ha-1;p;real;0;2 +Qfixtot;cumulative amount of N fixed symbiotically (BNF);kg.ha-1;p;real;0;2 +Qfixtot2;cumulative amount of N fixed symbiotically (BNF) by the two plants;kg.ha-1;sc;real;0;0 +Qles;cumulative amount of NO3-N leached at the base of the soil profile;kg.ha-1;sc;real;0;0 +Qlesd;cumulative amount of NO3-N leached into mole drains;kg.ha-1;soil;real;0;0 +Qmin;cumulative amount of mineralized N from soil;kg.ha-1;sc;real;0;0 +Qminh;cumulative amount of mineralized N derived from humus decomposition;kg.ha-1;sc;real;0;0 +Qminr;cumulative amount of mineralized N derived from organic residues decomposition;kg.ha-1;sc;real;0;0 +qmulch;biomass of plant mulch;t.ha-1;sc;real;0;0 +QNabso;cumulative N absorbed by the crop (fixation not included);kg.ha-1;p;real;0;2 +QNabso2;cumulative N absorbed by the two crops (fixation not included);kg.ha-1;sc;real;0;0 +QNabsoaer;cumulative N absorbed by the crop and allocated to the aerials;kg.ha-1;p;real;0;2 +QNabsoper;cumulative N absorbed by the crop and allocated to the perennial organs;kg.ha-1;p;real;0;2 +QNabsorac;cumulative N absorbed by the crop and allocated to the roots;kg.ha-1;p;real;0;2 +QNabsotot;cumulative N taken up by the crop, including N fixation ;kg.ha-1;p;real;0;2 +QNapp;cumulative amount of organic N added to soil (straw + roots + fallen leaves + organic fertilisers );kg.ha-1;sc;real;0;0 +QNdenit;cumulative amount of N denitrified during the simulation period;kg.ha-1;soil;real;0;0 +QNdenit_from_lev;cumulative amount of N denitrified during the crop cycle ( emergence or budbreak-harvest);kg.ha-1;sc;real;0;0 +QNdenit_from_plt;cumulative amount of N denitrified during the crop cycle;kg.ha-1;sc;real;0;0 +QNexport;Amount of nitrogen exported at harvest (harvested and removed parts);kg.ha-1;p;real;0;0 +QNexport2;Amount of nitrogen exported at harvest from the two plants;kg.ha-1;sc;real;0;0 +QNfauche;Amount of N exported in each cut;kg.ha-1;p;real;0;0 +QNfauchetot;Cumulative amount of N exported by all cuts;kg.ha-1;p;real;0;0 +QNfauchetot2;Cumulative amount of N exported by all cuts of the two plants;kg.ha-1;sc;real;0;0 +QNfeuille;N content of structural part of the leaves;kg.ha-1;p;real;0;0 +QNfeuilleres;N content of the leaves (structural + RubisCO);kg.ha-1;function;real;0;0 +QNgaz;cumulative amount of gaseous N losses (through volatilisation and denitrification) ;kg.ha-1;soil;real;0;0 +QNgrain;amount of N in harvested organs (grains / fruits);kg.ha-1;p;real;0;2 +Qnitrif;cumulative amount of N nitrified in soil (if option nitrification is activated);kg.ha-1;sc;real;0;0 +QNorgeng;cumulative amount of N immobilized from fertiliser;kg.ha-1;soil;real;0;0 +QNperenne;amount of N in perennial organs;kg.ha-1;p;real;0;2 +QNperennemort;cumulative amount of N in dead perennial organs;kg.ha-1;p;real;0;2 +QNperennemort2;cumulative amount of N in dead perennial organs of the two plants;kg.ha-1;sc;real;0;0 +QNplante;amount of N in plants (aerial + perennial organs), without roots;kg.ha-1;p;real;0;0 +QNplante_mx_av_cut;Amount of nitrogen taken up by the plant before cut (for cut crops, for others = QNplante);kg.ha-1;p;real;0;1 +QNplantenp;amount of N in non perennial organs (aerials + roots);kg.ha-1;p;real;n;2 +QNplantetombe;cumulative amount of N added to soil by fallen leaves;kg.ha-1;p;real;0;2 +QNplantetombe2;cumulative amount of N added to soil by fallen leaves of the two plants;kg.ha-1;sc;real;0;0 +QNprimed;cumulative amount of N mineralised by priming effect;kg.ha-1;sc;real;0;0 +QNrac;amount of N in roots;kg.ha-1;p;real;0;1 +QNracmort;cumulative amount of N added to soil by dead roots;kg.ha-1;p;real;0;1 +QNracmort2;cumulative amount of N added to soil by dead roots of the two plants;kg.ha-1;sc;real;0;1 +QNresorg;cumulative amount of organic exogenous N added to soil;kg.ha-1;sc;real;0;0 +QNresperenne;amount of N in perennial reserves;kg.ha-1;p;real;0;2 +QNresperennestruc;amount of N in the structural pool of perennial organs;kg.ha-1;p;real;0;0 +QNressuite;cumulative amount of N added to soil by aerial residues at harvest;kg.ha-1;p;real;0;1 +QNressuite_tot;cumulative amount of N added to soil by aerial residues from all harvests;kg.ha-1;p;real;0;1 +QNressuite_tot2;cumulative amount of N added to soil by aerial residues from all harvests of the two plants;kg.ha-1;sc;real;0;1 +QNressuite2;cumulative amount of N added to soil by aerial residues of the two plants;kg.ha-1;sc;real;0;1 +QNrestemp;amount of N in temporary reserves of vegetative organs that can be remobilised;kg.ha-1;p;real;0;0 +QNrogne;cumulative amount of N added to soil due to trimming;kg.ha-1;p;real;0;1 +QNrogne2;cumulative amount of N added to soil due to trimming of the two plants;kg.ha-1;sc;real;0;1 +QNtige;Structural nitrogen content in stems;kg.ha-1;p;real;0;0 +QNtot;amount of N in whole plant (aerial + root + perennial organs);kg.ha-1;p;real;0;0 +QNtot2;amount of N in whole plant (aerial + root + perennial organs) of the two plants;kg.ha-1;sc;real;0;0 +QNveg;amount of N in vegetative organs;kg.ha-1;p;real;0;0 +QNvegstruc;amount of N in the structural part of vegetative organs;kg.ha-1;p;real;0;0 +QNvoleng;cumulative amount of N volatilised from fertiliser;kg.ha-1;soil;real;0;0 +QNvolorg;cumulative amount of N volatilised from organic inputs;kg.ha-1;soil;real;0;0 +qres_pature;amount of crop residue by pasture applied to the soil (fresh weight);t MF ha-1;sc;real;0;0 +Qressuite;biomass of residues from the previous crop returned to soil at harvest (without fallen leaves);t.ha-1;p;real;0;1 +Qressuite_tot;amount of total harvest residues (aerials + roots);t.ha-1;p;real;0;1 +ra_recal;aerodynamic resistance between the canopy and the reference level zr;s.m-1;sta;real;0;0 +raint;photosynthetic active radiation intercepted by the canopy;MJ.m-2;p;real;0;2 +ras;aerodynamic resistance between the soil and the canopy;s.m-1;sc;real;0;0 +ratioFT;Leaves to stem ratio;SD;function;real;0;0 +ratioTF;Stem to leaves ratio, taking the value of 0 or P_tigefeuil;SD;p;real;0;0 +Ratm;atmospheric radiation;MJ.m-2;sc;real;0;0 +rc;resistance of canopy;s.m-1;p;real;0;1 +rdif;ratio of diffuse radiation to global radiation;0-1;sc;real;0;0 +remobilj;daily amount of biomass remobilized for growth;t.ha-1.d-1;p;real;0;2 +remontee;capillary uptake from the base of the soil profile;mm.d-1;soil;real;0;0 +rendementsec;biomass of harvested organs (0% moisture);t.ha-1;p;real;0;1 +resmes;amount of soil water integrated on the measurement depth;mm;function;real;0;0 +resperenne;biomass of metabolic reserves in the perennial organs;t.ha-1;p;real;0;2 +resrac;soil water reserve in the root zone;mm;p;real;0;1 +restemp;biomass reserves (carbohydrates) in shoots that can be accumulated or mobilized for crop growth;t.ha-1;p;real;0;2 +rfpi;reduction factor on plant development due to photoperiod;0-1;p;real;0;1 +rfvi;reduction factor on plant development due to vernalization;0-1;p;real;0;1 +rlj;rate of root length growth;cm.cm-2.d-1;p;real;0;1 +rltot;total root length (accounting for senescent roots);cm.cm-2;function;real;0;1 +rltotf;total length of fine roots (accounting for senescent roots);cm.cm-2;p;real;0;1 +rltotg;total length of coarse roots (accounting for senescent roots);cm.cm-2;p;real;0;1 +rmaxi;maximum water reserve used;mm;p;real;0;1 +rnet;net radiation;MJ.m-2;sc;real;0;0 +rnetS;net radiation at the soil surface;MJ.m-2;sc;real;0;0 +rombre;fraction of the total radiation in the shade;0-1;p;real;0;1 +rsoleil;fraction of the total radiation in the full sun;0-1;p;real;0;1 +RsurRU;fraction of plant available water over the soil profile;0-1;function;real;0;0 +RsurRUrac;fraction of plant available water over the root profile;0-1;p;real;0;1 +RU;plant available water content over the soil profile;mm;function;real;0;0 +ruissel;daily amount of water in total runoff (surface + overflow);mm.d-1;sc;real;0;0 +ruisselsurf;daily amount of water in runoff at soil surface;mm.d-1;sc;real;0;0 +ruisselt;cumulative amount of water in total runoff (surface + overflow);mm;sc;real;0;0 +runoff_from_lev;cumulative amount of water in runoff (surface + overflow) during the crop cycle ( emergence or budbreak-harvest);mm;sc;real;0;0 +runoff_from_plt;cumulative amount of water in runoff (surface + overflow) during the crop cycle (sowing-harvest);mm;sc;real;0;0 +RUrac;maximum plant available water content over the root profile;mm;p;real;0;1 +saturation;amount of water in the soil macroporosity;mm;sc;real;0;0 +Sdepth(n);snow cover depth;m;c;real;n;0 +senfac;reduction factor on leaf life span due to water stress (increasing senescence rate);0-1;p;real;0;2 +sla;specific leaf area;cm2.g-1;p;real;0;2 +SMN;amount of soil mineral N content over the soil profile;kg.ha-1;sc;real;0;0 +SMNmes;amount of soil mineral N content over the depth profmes;kg.ha-1;function;real;0;0 +Snowaccu(n);daily snowfall accumulation (mm water equivalent);mm.d-1;c;real;n;0 +Snowmelt(n);daily snowmelt (mm water equivalent);mm.d-1;c;real;n;0 +SOC;amount of soil organic C (= Chumt + Cb) over the profhum depth;kg.ha-1;sc;real;0;0 +SOCL(1);amount of soil organic C (= Chumt + Cb) in the layer 1;kg.ha-1;sc;real;0;0 +SOCL(2);amount of soil organic C (= Chumt + Cb) in the layer 2;kg.ha-1;sc;real;0;0 +SOCL(3);amount of soil organic C (= Chumt + Cb) in the layer 3;kg.ha-1;sc;real;0;0 +SOCL(4);amount of soil organic C (= Chumt + Cb) in the layer 4;kg.ha-1;sc;real;0;0 +SOCL(5);amount of soil organic C (= Chumt + Cb) in the layer 5;kg.ha-1;sc;real;0;0 +SOC0;amount of soil organic C (= Chumt + Cb) over the profhum depth at time 0;kg.ha-1;sc;real;0;0 +SOCbalance;Soil organic C balance (inputs-outputs) over the whole soil profile;kg.ha-1;function;real;0;0 +SOCinputs;Soil organic C inputs to the whole soil profile;kg.ha-1;sc;real;0;0 +SOCtot;amount of soil organic C (all organic pools) over the whole soil profile;kg.ha-1;sc;real;0;0 +SoilAvW;amount of plant available water in soil over the depth profmes;mm;sc;real;0;0 +SoilAvW_by_layers(1);amount of plant available water in soil for layer 1;mm;function;real;1;0 +SoilAvW_by_layers(2);amount of plant available water in soil for layer 2;mm;function;real;2;0 +SoilAvW_by_layers(3);amount of plant available water in soil for layer 3;mm;function;real;3;0 +SoilAvW_by_layers(4);amount of plant available water in soil for layer 4;mm;function;real;4;0 +SoilAvW_by_layers(5);amount of plant available water in soil for layer 5;mm;function;real;5;0 +SoilWatM;amount of plant available water in soil over the depth profmesW;mm;sc;real;0;0 +som_HUR;cumulative water content of the soil microporosity;mm;sc;real;0;0 +som_sat;cumulative amount of water in the soil macroporosity;mm;sc;real;0;0 +somcour;cumulative units of development (upvt) between two stages;degreeC.d;p;real;0;1 +somcourdrp;cumulative units of development (upvt) between two reproductive stages;degreeC.d;p;real;0;1 +somcourfauche;sum of temperature beetwen 2 cuts of forage crop;degreeC.d;p;real;0;1 +somcourmont;cumulative units of development from the start of vernalisation;degreeC.d;p;real;0;1 +somdifftculttair;cumulative temperature difference (tcult-tair) during the simulation period;degreeC;c;real;0;0 +somtemp;sum of temperatures (expressed in Q10 =sum (2.0 ** (udevair ou udevcult / 10.));degreeC.d;p;real;0;1 +somudevair;sum of air temperature (udevair) from sowing to harvest;degreeC;p;real;0;1 +somudevcult;sum of crop temperature (udevcult) from sowing to harvest;degreeC;p;real;0;1 +somupvtsem;sum of development units (upvt) from sowing to harvest;degreeC;p;real;0;1 +SON;amount of soil organic N (= Nhumt + Nb) over the profhum depth;kg.ha-1;sc;real;0;0 +SONL(1);amount of soil organic N (= Nhumt + Nb) in the layer 1;kg.ha-1;sc;real;0;0 +SONL(2);amount of soil organic N (= Nhumt + Nb) in the layer 2;kg.ha-1;sc;real;0;0 +SONL(3);amount of soil organic N (= Nhumt + Nb) in the layer 3;kg.ha-1;sc;real;0;0 +SONL(4);amount of soil organic N (= Nhumt + Nb) in the layer 4;kg.ha-1;sc;real;0;0 +SONL(5);amount of soil organic N (= Nhumt + Nb) in the layer 5;kg.ha-1;sc;real;0;0 +SON0;amount of soil organic N (= Nhumt + Nb) over the profhum depth at time 0;kg.ha-1;sc;real;0;0 +SONbalance;Soil organic N balance (inputs-outputs) over the whole soil profile;kg.ha-1;function;real;0;0 +SONinputs;Soil organic N inputs to the whole soil profile;kg.ha-1;sc;real;0;0 +SONtot;amount of soil organic N (all organic pools) over the whole soil profile;kg.ha-1;sc;real;0;0 +sourcepuits;source to sink ratio of assimilates in the plant;SD;p;real;0;2 +spfruit;reduction factor on the fruits number due to trophic stress;0-1;p;real;0;2 +splai;source to sink ratio of assimilates in the leaves;SD;p;real;0;2 +stemflow;daily amount of water runoff along the stem;mm.d-1;p;real;0;1 +STN;total soil N (mineral + organic);kg.ha-1;sc;real;0;0 +str1intercoupe;average stomatal water stress index during the vegetative phase (emergence - maximum LAI) of forage crops;0-1;p;real;0;0 +str2intercoupe;average stomatal water stress index during the reproductive phase (maximum LAI - maturity) of forage crops;0-1;p;real;0;0 +stu1intercoupe;average turgescence water stress index during the vegetative phase (emergence - maximum LAI) of forage crops;0-1;p;real;0;0 +stu2intercoupe;average turgescence water stress index during the reproductive phase (maximum LAI - maturity) of forage crops;0-1;p;real;0;0 +sucre;sugar content of harvested organs;0-1;p;real;0;2 +sucre_percent;sugar content of harvested organs;% fresh weight;function;real;0;2 +surf(ao);fraction of the soil surface in the shade;0-1;p;real;ao;0 +surf(as);fraction of the soil surface in the sun;0-1;p;real;as;0 +swfac;stomatic water stress index;0-1;p;real;0;2 +swfac1moy;average stomatic water stress index over the vegetative stage;0-1;p;real;0;1 +swfac2moy;average stomatic water stress index over the reproductive stage;0-1;p;real;0;1 +tairveille;mean air temperature at the previous day;degreeC;sc;real;0;0 +tauxcouv(n);cover rate of the canopy;SD;function;real;n;0 +tcult;crop surface temperature (daily average);degreeC;sc;real;0;0 +tcult_tairveille;difference between canopy temperature and air temperature;degreeC;sc;real;0;0 +tcultmax;crop surface temperature (daily maximum);degreeC;sc;real;0;0 +tcultmin;crop surface temperature (daily minimum);degreeC;sc;real;0;0 +tempeff;efficient temperature for growth;degreeC;p;real;0;1 +tetp(n);efficient potential evapotranspiration (entered or calculated);mm.d-1;c;real;n;0 +tetstomate;threshold of soil water content limiting transpiration and photosynthesis;% vol;p;real;0;1 +teturg;threshold of soil water content limiting the growth of leaves (in surface area);% vol;p;real;0;1 +tmax(n);maximum active temperature of atmosphere;degreeC;c;real;n;0 +tmaxext(n);maximum temperature of external atmosphere;degreeC;c;real;n;0 +tmaxrec(n);recalculated daily maximum temperature (with presence of a snow cover);degreeC;c;real;n;0 +tmin(n);minimum active temperature of atmosphere;degreeC;c;real;n;0 +tminext(n);minimum temperature of external atmsphere;degreeC;c;real;n;0 +tminrec(n);recalculated daily minimum temperature (with presence of a snow cover);degreeC;c;real;n;0 +tmoy(n);mean active temperature of atmosphere;degreeC;c;real;n;0 +tmoyext(n);mean temperature of external atmosphere;degreeC;c;real;n;0 +tmoyIpltJuin;mean temperature from sowing or planting (iplt stage) until June 30;degreeC;function;real;0;1 +tmoyIpltSept;mean temperature from sowing or planting (iplt stage) until September 30;degreeC;function;real;0;1 +tncultmat;average of minimum crop temperatures (tcultmin) between the stages lax and rec;degreeC;c;real;0;0 +tnhc;cumulative normalized time for the mineralisation of humus;d;sc;real;0;0 +tnrc;cumulative normalized time for the mineralisation of organic residues;d;sc;real;0;0 +totapN;cumulative amount of mineral N added by mineral fertilisers and organic fertilisers;kg.ha-1;sc;real;0;0 +totapNres;cumulative amount of mineral N added by organic fertilisers;kg.ha-1;sc;real;0;0 +totir;cumulative amount of irrigation water;mm;function;real;0;0 +tpm(n);water vapour pressure in air;hPa;c;real;n;0 +trg(n);active radiation (entered or calculated);MJ.m-2;c;real;n;0 +trgext(n);exterior radiation;MJ.m-2;c;real;n;0 +trr(n);daily rainfall;mm.d-1;c;real;n;0 +TS(1);mean soil temperature (in layer 1);degreeC;sc;real;1;0 +TS(2);mean soil temperature (in layer 2);degreeC;sc;real;2;0 +TS(3);mean soil temperature (in layer 3);degreeC;sc;real;3;0 +TS(4);mean soil temperature (in layer 4);degreeC;sc;real;4;0 +TS(5);mean soil temperature (in layer 5);degreeC;sc;real;5;0 +tsol(10);temperature in the soil at 10 cm ;degrees;sc;real;0;0 +tsol_mean_0_profsem;daily min soil temperature on the layer 1 to sowing depth;d;p;real;0;1 +tsol_mean_ger_lev_0_dpthsow;mean soil temperature on the layer 1 to sowing depth from germination date to emergence;degreeC.d;p;real;0;1 +tsol_mean_plt_ger_0_dpthsow;mean soil temperature on the layer 1 to sowing depth from sowing date to germination ;degreeC.d;p;real;0;1 +tsol_min_0_profsem;daily mean soil temperature on the layer 1 to sowing depth;d;p;real;0;1 +tsol_min_ger_lev_0_dpthsow;min soil temperature on the layer 1 to sowing depth from germination date to emergence;degreeC.d;p;real;0;1 +tsol_min_plt_ger_0_dpthsow;min soil temperature on the layer 1 to sowing depth from sowing date to germination ;degreeC.d;p;real;0;1 +turfac;turgescence water stress index;0-1;p;real;0;2 +turfac1moy;average turgescence water stress index during the vegetative stage;0-1;p;real;0;1 +turfac2moy;average turgescence water stress index during the reproductive stage;0-1;p;real;0;1 +tustress;reduction factor on leaf growth due to the effective water stress (= min(turfac,innlai));0-1;sc;real;0;0 +tvent(n);mean daily wind speed at 2 m high above soil;m.s-1;c;real;n;0 +udevair;effective temperature for crop development, computed with tair;degreeC.d;p;real;0;1 +udevcult;effective temperature for crop development, computed with tcult;degreeC.d;p;real;0;1 +ulai(n);relative development unit for LAI;0-3;p;real;n;2 +upvt(n);development unit;degreeC.d;p;real;n;0 +urac;daily relative development unit for root growth;1-3;p;real;0;1 +vitmoy;mean canopy growth rate;g.m-2.d-1;p;real;0;2 +xmlch1;thickness of the dry layer created by evaporation from the soil and mulch;cm;sc;real;0;0 +zrac;maximum depth reached by root system;cm;p;real;0;1 +zracmax;maximum rooting depth;cm;p;real;0;1 +varrapforme;Ratio between plant heigth and plant width;factor;p;real;0;2 +rnet_plant;Net radiation for the plant layer;MJ.m-2;p;real;0;1 +ef_n_w_height;effect of water and nitrogen deficit on height (0-1);0-1;p;real;0;2 +potential_height;plant height without stress;cm;p;real;0;2 diff --git a/inst/stics/V11.0.0/config/param_gen.xml b/inst/stics/V11.0.0/config/param_gen.xml new file mode 100644 index 0000000..52bea0c --- /dev/null +++ b/inst/stics/V11.0.0/config/param_gen.xml @@ -0,0 +1,711 @@ + + + + + + + + + + + + + + + + + + 31 + + + 0.2 + + + 0.48000 + 0.83 + + + 0.08150 + 0.20000 + 0.70000 + + + 0.70000 + 1.40000 + 2.00000 + + + 1.40000 + 0.50000 + 0.04500 + 10.00000 + 20.00000 + 0.00000 + + + + 0.0 + 0.12000 + 25.00000 + 15.00000 + 0.10300 + 12.00000 + 15.00000 + 0.0007 + 0.02519 + 0.015 + 0.11200 + 8.50000 + 0.06000 + 11.00000 + 0.10500 + 5.50000 + 8.50000 + 2.00000 + 400.00000 + 0.25000 + 0.90000 + 0.00500 + 1.00000 + 8.60000 + 0.50000 + 0.25000 + 0.50000 + 0.04000 + 0.50000 + 3.00000 + + + 0.30 + 0.90 + 4 + 7.2 + 1.0 + 5.6 + 9.2 + 0.62 + 47 + 25 + 148 + 3.0 + + + + + + + + + + 5.00000 + 0.00537 + 0.77000 + 1.00000 + -1.50000 + -0.03000 + 1.20000 + 1.00000 + + + + 30.0 + 5.00000 + + + + + + + diff --git a/inst/stics/V11.0.0/config/param_newform.xml b/inst/stics/V11.0.0/config/param_newform.xml new file mode 100644 index 0000000..bf23eb0 --- /dev/null +++ b/inst/stics/V11.0.0/config/param_newform.xml @@ -0,0 +1,85 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/config/preferences.xml b/inst/stics/V11.0.0/config/preferences.xml new file mode 100644 index 0000000..953b631 --- /dev/null +++ b/inst/stics/V11.0.0/config/preferences.xml @@ -0,0 +1,8 @@ + + + +Javastics user preferences +{modulostics_linux stics_modulo}, +modulostics_linux +/tmp/RtmpaBydt6/data-master/study_case_1/V11.0/XmlFiles + diff --git a/inst/stics/V11.0.0/config/prof.mod b/inst/stics/V11.0.0/config/prof.mod new file mode 100644 index 0000000..e0b00c6 --- /dev/null +++ b/inst/stics/V11.0.0/config/prof.mod @@ -0,0 +1,4 @@ +2 +Chum +10 +01 01 2000 diff --git a/inst/stics/V11.0.0/config/profil.csv b/inst/stics/V11.0.0/config/profil.csv new file mode 100644 index 0000000..03dc363 --- /dev/null +++ b/inst/stics/V11.0.0/config/profil.csv @@ -0,0 +1,21 @@ +Name;Definition;Unit;Source +ammonium;Amount of ammonium NH4 by layer;kg.ha-1;soil +C_allresidues;total amount of C for all residues by layer;kg.ha-1;sc +Chum;Quantity of C in humus in each layer;kg.ha-1;sc +efnrac;effect of mineral nitrogen on the roots;0-1;plant +humirac;soil dryness on the roots;0-1;plant +hur;soil water content;mm.cm-1;sc +husup_by_cm;water drainage under each layer of 1 cm;mm;sc +lracz;efficient root density profile;cm.cm-3sol;plant +msrac;biomass of roots;t.ha-1;function +N_allresidues;total amount of N for all residues by layer;kgN.ha-1;sc +Nhum;Quantity of N in humus in each layer;kgN.ha-1;sc +nit;profile of soil nitrates NO3;kgN.ha-1;soil +p_rl;percentage of root length in relation to total length;%;function +p_rlf;percentage of fine roots;%;function +p_rlg;percentage of coarse roots;%;function +rl;length of coarse roots plus length of fine roots;cm.cm-2sol;function +rlf;length of fine roots;cm.cm-2sol;plant +rlg;length of coarse roots;cm.cm-2sol;plant +sat;Amount of water remaining in the soil macroporosity by layer mm;mm.cm-1;sc +tsol;profile of soil temperature;degrees.C;sc diff --git a/inst/stics/V11.0.0/config/rap.mod b/inst/stics/V11.0.0/config/rap.mod new file mode 100644 index 0000000..d64396c --- /dev/null +++ b/inst/stics/V11.0.0/config/rap.mod @@ -0,0 +1,15 @@ +1 +1 +2 +1 +rec +masec(n) +mafruit +iflos +imats +irecs +laimax +cprecip +cet +QNplante +Qles diff --git a/inst/stics/V11.0.0/config/var.def b/inst/stics/V11.0.0/config/var.def new file mode 100644 index 0000000..3bc7e59 --- /dev/null +++ b/inst/stics/V11.0.0/config/var.def @@ -0,0 +1,45 @@ +lai(n) +masec(n) +mafruit +HR(1) +HR(2) +HR(3) +HR(4) +HR(5) +resmes +drain +esol +et +zrac +tcult +AZnit(1) +AZnit(2) +AZnit(3) +AZnit(4) +AZnit(5) +Qles +QNplante +azomes +inn +chargefruit +AZamm(1) +AZamm(2) +AZamm(3) +AZamm(4) +AZamm(5) +CNgrain +concNO3les +drat +fapar +hauteur +Hmax +humidite +LRACH(1) +LRACH(2) +LRACH(3) +LRACH(4) +LRACH(5) +mafrais +pdsfruitfrais +Qdrain +rnet diff --git a/inst/stics/V11.0.0/config/var.mod b/inst/stics/V11.0.0/config/var.mod new file mode 100644 index 0000000..9a91098 --- /dev/null +++ b/inst/stics/V11.0.0/config/var.mod @@ -0,0 +1,69 @@ +lai(n) +masec(n) +mafruit +HR(1) +HR(2) +HR(3) +HR(4) +HR(5) +resmes +drain +esol +et +zrac +tcult +AZnit(1) +AZnit(2) +AZnit(3) +AZnit(4) +AZnit(5) +Qles +QNplante +azomes +chargefruit +AZamm(1) +AZamm(2) +AZamm(3) +AZamm(4) +AZamm(5) +CNgrain +concNO3les +drat +fapar +hauteur +Hmax +humidite +LRACH(1) +LRACH(2) +LRACH(3) +LRACH(4) +LRACH(5) +mafrais +pdsfruitfrais +Qdrain +rnet +QNgrain +psibase +mabois +H2Orec +mafeuiljaune +mafeuilverte +humirac_mean +tempeff +deltai(n) +ulai(n) +tustress +efdensite +densite +exolai +dltams(n) +remobilj +exofac +exobiom +inn +innlai +inns +turfac +swfac +Qminh +Qminr diff --git a/inst/stics/V11.0.0/custom_exe/stics_custom.exe b/inst/stics/V11.0.0/custom_exe/stics_custom.exe new file mode 100644 index 0000000..7c089c1 Binary files /dev/null and b/inst/stics/V11.0.0/custom_exe/stics_custom.exe differ diff --git a/inst/stics/V11.0.0/custom_exe/stics_custom_lin b/inst/stics/V11.0.0/custom_exe/stics_custom_lin new file mode 100755 index 0000000..112c04a Binary files /dev/null and b/inst/stics/V11.0.0/custom_exe/stics_custom_lin differ diff --git a/inst/stics/V11.0.0/default/Mais_tec.xml b/inst/stics/V11.0.0/default/Mais_tec.xml new file mode 100644 index 0000000..fdf7a23 --- /dev/null +++ b/inst/stics/V11.0.0/default/Mais_tec.xml @@ -0,0 +1,433 @@ + + + + + + + + + + + + + + + 112 + 1 + 1.00 + 42.00 + 60.00 + 0.00 + 0.00 + + + + + + + + + + + + + 112 + 0.00 + 25.00 + + + + + 117 + 5.00000 + 9.50000 + 4 + + + + + + + + 1.00000 + + + 120.00000 + + + 0.11000 + + + + + + + + + + 112 + 220.00 + 2 + + + + + + 300 + straw+roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/default/climaisj.1996 b/inst/stics/V11.0.0/default/climaisj.1996 new file mode 100644 index 0000000..79a95a5 --- /dev/null +++ b/inst/stics/V11.0.0/default/climaisj.1996 @@ -0,0 +1,366 @@ +climais 1996 1 1 1 8.0 11.1 1.2 0.1 17.0 -999.9 -999.9 330.0 +climais 1996 1 2 2 7.2 9.4 1.7 0.4 0.5 -999.9 -999.9 330.0 +climais 1996 1 3 3 2.2 8.6 2.6 0.2 0.5 -999.9 -999.9 330.0 +climais 1996 1 4 4 1.4 8.9 1.6 0.4 2.5 -999.9 -999.9 330.0 +climais 1996 1 5 5 5.2 8.8 0.9 0.4 9.2 -999.9 -999.9 330.0 +climais 1996 1 6 6 3.8 9.5 1.4 0.0 27.0 -999.9 -999.9 330.0 +climais 1996 1 7 7 7.8 12.2 3.1 0.6 2.5 -999.9 -999.9 330.0 +climais 1996 1 8 8 5.9 12.5 4.2 0.7 1.0 -999.9 -999.9 330.0 +climais 1996 1 9 9 8.6 12.1 2.6 0.6 5.5 -999.9 -999.9 330.0 +climais 1996 1 10 10 6.5 8.7 1.4 0.0 7.5 -999.9 -999.9 330.0 +climais 1996 1 11 11 5.7 9.4 1.6 0.2 5.5 -999.9 -999.9 330.0 +climais 1996 1 12 12 6.3 11.7 4.3 0.4 0.0 -999.9 -999.9 330.0 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4.195; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 7; 24; 206; 5.036; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 7; 25; 207; -999.99; 8.962; 0.0; -999.99; -999.99; -999.99; 175.4 +1996; 8; 2; 215; 5.024; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 8; 9; 222; 4.996; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 8; 14; 227; -999.99; 12.367; 0.0; -999.99; -999.99; -999.99; 178.1 +1996; 8; 20; 233; 4.885; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 9; 3; 247; -999.99; 17.94; 6.13; -999.99; -999.99; -999.99; 233.0 +1996; 9; 12; 256; 4.565; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 10; 15; 289; -999.99; 20.5; 10.52; -999.99; -999.99; -999.99; 257.5 +1996; 10; 23; 297; -999.99; -999.99; -999.99; 45.0; 49.0; 25.0; -999.99 diff --git a/inst/stics/V11.0.0/default/prof.mod b/inst/stics/V11.0.0/default/prof.mod new file mode 100644 index 0000000..e0b00c6 --- /dev/null +++ b/inst/stics/V11.0.0/default/prof.mod @@ -0,0 +1,4 @@ +2 +Chum +10 +01 01 2000 diff --git a/inst/stics/V11.0.0/default/rap.mod b/inst/stics/V11.0.0/default/rap.mod new file mode 100644 index 0000000..d64396c --- /dev/null +++ b/inst/stics/V11.0.0/default/rap.mod @@ -0,0 +1,15 @@ +1 +1 +2 +1 +rec +masec(n) +mafruit +iflos +imats +irecs +laimax +cprecip +cet +QNplante +Qles diff --git a/inst/stics/V11.0.0/default/sols.xml b/inst/stics/V11.0.0/default/sols.xml new file mode 100644 index 0000000..c1c5293 --- /dev/null +++ b/inst/stics/V11.0.0/default/sols.xml @@ -0,0 +1,242 @@ + + + + + 22.0 + 0.1200 + 35.0000 + 1.0000 + 7.0000 + 0.0000 + 0.2000 + 0.0000 + 0.0000 + 200.0000 + 50.0000 + 0.5000 + 60.0000 + 5.0000 + 0.0100 + 0.0000 + 0.65000 + 0.3300 + + + + + + + + + + + + + + + + + + + 25.00 + 22.50 + 8.50 + 1.16 + 0.00 + 1 + 50.00 + 10 + + + 30.00 + 25.40 + 11.60 + 1.29 + 0.00 + 1 + 50.00 + 10 + + + 35.00 + 25.80 + 15.30 + 1.15 + 0.00 + 1 + 50.00 + 10 + + + 30.00 + 28.70 + 19.00 + 0.91 + 0.00 + 1 + 50.00 + 10 + + + 0.00 + 0.00 + 0.00 + 0.00 + 0.00 + 1 + 50.00 + 10 + + + + diff --git a/inst/stics/V11.0.0/default/usms.xml b/inst/stics/V11.0.0/default/usms.xml new file mode 100644 index 0000000..4b370e1 --- /dev/null +++ b/inst/stics/V11.0.0/default/usms.xml @@ -0,0 +1,28 @@ + + + + 112 + 360 + mais_ini.xml + solmais + climaisj_sta.xml + climaisj.1996 + climaisj.1996 + 1 + 1 + 0 + + corn_plt.xml + Mais_tec.xml + mais.lai + maize.obs + + + null + null + null + null + + + + diff --git a/inst/stics/V11.0.0/default/var.mod b/inst/stics/V11.0.0/default/var.mod new file mode 100644 index 0000000..9a91098 --- /dev/null +++ b/inst/stics/V11.0.0/default/var.mod @@ -0,0 +1,69 @@ +lai(n) +masec(n) +mafruit +HR(1) +HR(2) +HR(3) +HR(4) +HR(5) +resmes +drain +esol +et +zrac +tcult +AZnit(1) +AZnit(2) +AZnit(3) +AZnit(4) +AZnit(5) +Qles +QNplante +azomes +chargefruit +AZamm(1) +AZamm(2) +AZamm(3) +AZamm(4) +AZamm(5) +CNgrain +concNO3les +drat +fapar +hauteur +Hmax +humidite +LRACH(1) 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2013 5 29 149 7.5 13.2 16.5 3.2 0.5 3.5 9.0 375.0 +Auzeville 2013 5 30 150 8.6 14.8 10.5 2.3 36.0 3.3 11.4 375.0 +Auzeville 2013 5 31 151 11.2 17.5 15.4 3.6 4.5 4.3 12.6 375.0 +Auzeville 2013 6 1 152 12.7 19.7 14.8 3.7 5.0 4.0 14.4 375.0 +Auzeville 2013 6 2 153 12.0 19.4 13.2 3.2 0.0 3.3 14.3 375.0 +Auzeville 2013 6 3 154 10.9 21.5 27.0 5.3 0.0 2.6 11.4 375.0 +Auzeville 2013 6 4 155 7.8 20.6 21.3 3.7 0.0 1.2 11.0 375.0 +Auzeville 2013 6 5 156 9.1 25.4 30.2 5.6 0.0 2.3 13.0 375.0 +Auzeville 2013 6 6 157 13.3 24.7 30.3 6.4 0.0 3.5 14.3 375.0 +Auzeville 2013 6 7 158 13.4 25.5 26.0 5.7 0.0 3.1 15.1 375.0 +Auzeville 2013 6 8 159 13.7 17.8 6.6 1.8 10.0 1.7 14.8 375.0 +Auzeville 2013 6 9 160 12.1 18.0 10.7 2.3 12.0 1.9 14.5 375.0 +Auzeville 2013 6 10 161 13.3 20.5 15.9 3.4 1.0 2.1 15.2 375.0 +Auzeville 2013 6 11 162 10.8 24.5 23.1 4.2 0.0 1.1 15.5 375.0 +Auzeville 2013 6 12 163 13.4 28.4 30.0 5.7 0.0 0.9 17.5 375.0 +Auzeville 2013 6 13 164 14.4 19.7 6.7 1.7 2.5 2.0 17.1 375.0 +Auzeville 2013 6 14 165 13.1 27.7 27.6 5.2 0.0 0.8 18.0 375.0 +Auzeville 2013 6 15 166 16.4 24.3 21.8 4.7 0.0 1.6 16.7 375.0 +Auzeville 2013 6 16 167 13.2 28.1 29.7 6.5 0.0 3.6 16.5 375.0 +Auzeville 2013 6 17 168 18.9 26.7 19.0 5.9 11.5 5.2 20.3 375.0 +Auzeville 2013 6 18 169 16.0 24.9 11.6 3.1 14.0 2.2 21.1 375.0 +Auzeville 2013 6 19 170 13.9 19.1 10.4 2.4 13.5 1.6 15.9 375.0 +Auzeville 2013 6 20 171 12.8 20.8 21.1 4.1 0.0 1.9 14.7 375.0 +Auzeville 2013 6 21 172 10.4 18.6 12.9 2.4 2.0 1.6 13.9 375.0 +Auzeville 2013 6 22 173 12.8 23.0 23.6 4.7 0.0 2.0 14.3 375.0 +Auzeville 2013 6 23 174 14.2 20.1 14.8 4.0 0.5 3.4 13.7 375.0 +Auzeville 2013 6 24 175 10.9 19.1 16.7 3.7 0.0 2.6 11.6 375.0 +Auzeville 2013 6 25 176 11.2 21.2 21.5 4.3 0.0 2.1 11.8 375.0 +Auzeville 2013 6 26 177 11.0 22.9 30.4 5.6 0.0 2.0 11.4 375.0 +Auzeville 2013 6 27 178 9.9 23.0 27.7 5.2 0.0 2.2 11.2 375.0 +Auzeville 2013 6 28 179 14.6 20.7 11.9 3.3 0.5 2.7 14.1 375.0 +Auzeville 2013 6 29 180 15.1 22.4 12.7 3.5 0.0 2.9 16.0 375.0 +Auzeville 2013 6 30 181 15.8 25.6 25.4 5.2 0.0 1.6 17.3 375.0 +Auzeville 2013 7 1 182 12.9 29.7 27.4 5.3 0.0 0.8 18.0 375.0 +Auzeville 2013 7 2 183 14.5 26.1 25.7 5.4 4.5 2.7 17.1 375.0 +Auzeville 2013 7 3 184 17.3 22.5 8.4 2.4 2.0 2.3 19.5 375.0 +Auzeville 2013 7 4 185 15.1 24.8 25.0 5.2 0.0 2.3 17.0 375.0 +Auzeville 2013 7 5 186 13.9 29.7 30.1 5.8 0.0 1.0 18.3 375.0 +Auzeville 2013 7 6 187 14.2 31.6 30.1 6.1 0.0 1.0 17.9 375.0 +Auzeville 2013 7 7 188 16.1 31.4 29.7 6.2 0.0 1.2 18.8 375.0 +Auzeville 2013 7 8 189 17.1 33.0 28.3 6.3 0.0 1.3 18.4 375.0 +Auzeville 2013 7 9 190 17.6 32.8 28.7 6.9 0.0 2.3 17.0 375.0 +Auzeville 2013 7 10 191 17.0 32.1 17.0 4.3 0.0 1.0 20.0 375.0 +Auzeville 2013 7 11 192 16.9 31.2 24.5 5.4 0.0 1.1 18.5 375.0 +Auzeville 2013 7 12 193 17.0 32.4 27.0 5.7 0.0 0.7 19.3 375.0 +Auzeville 2013 7 13 194 19.0 32.6 19.7 5.0 4.5 1.3 23.2 375.0 +Auzeville 2013 7 14 195 17.9 28.5 13.2 3.3 0.0 0.7 21.0 375.0 +Auzeville 2013 7 15 196 18.5 31.2 27.2 6.0 0.0 1.2 20.1 375.0 +Auzeville 2013 7 16 197 17.5 32.1 20.1 4.8 0.0 1.1 21.3 375.0 +Auzeville 2013 7 17 198 18.2 29.7 21.8 5.1 0.5 1.6 21.7 375.0 +Auzeville 2013 7 18 199 18.3 29.8 20.3 4.8 0.0 1.3 21.5 375.0 +Auzeville 2013 7 19 200 16.6 32.6 26.4 5.9 0.0 1.4 20.7 375.0 +Auzeville 2013 7 20 201 19.6 32.4 26.3 6.6 0.0 2.6 22.5 375.0 +Auzeville 2013 7 21 202 18.5 33.6 26.6 6.5 0.0 2.1 20.9 375.0 +Auzeville 2013 7 22 203 18.4 34.2 27.3 6.1 0.0 0.9 20.5 375.0 +Auzeville 2013 7 23 204 19.5 32.4 18.8 4.7 0.0 1.1 22.1 375.0 +Auzeville 2013 7 24 205 19.9 31.2 22.1 5.1 0.0 1.0 22.9 375.0 +Auzeville 2013 7 25 206 18.5 35.6 27.2 7.1 0.0 2.9 22.2 375.0 +Auzeville 2013 7 26 207 22.3 33.6 23.4 6.8 0.0 3.2 23.7 375.0 +Auzeville 2013 7 27 208 22.8 33.2 24.1 7.3 0.5 4.1 24.9 375.0 +Auzeville 2013 7 28 209 19.3 28.2 17.0 4.1 8.5 1.1 20.9 375.0 +Auzeville 2013 7 29 210 15.7 26.8 24.0 5.1 0.0 1.9 17.7 375.0 +Auzeville 2013 7 30 211 15.1 28.3 27.2 5.2 0.0 0.8 17.4 375.0 +Auzeville 2013 7 31 212 15.1 34.6 27.9 5.9 0.0 1.0 17.6 375.0 +Auzeville 2013 8 1 213 20.9 33.4 27.5 8.3 0.0 4.7 20.5 375.0 +Auzeville 2013 8 2 214 22.6 33.0 25.4 8.4 0.0 5.4 22.0 375.0 +Auzeville 2013 8 3 215 21.0 29.7 23.7 6.1 0.0 2.3 18.1 375.0 +Auzeville 2013 8 4 216 19.7 31.0 26.2 5.7 0.0 1.0 18.4 375.0 +Auzeville 2013 8 5 217 18.3 30.4 21.9 5.3 0.0 2.5 21.0 375.0 +Auzeville 2013 8 6 218 20.7 28.1 13.6 3.6 7.0 1.4 22.0 375.0 +Auzeville 2013 8 7 219 17.1 25.0 11.4 2.9 26.5 1.5 20.9 375.0 +Auzeville 2013 8 8 220 15.5 24.1 18.1 4.1 0.5 2.4 16.4 375.0 +Auzeville 2013 8 9 221 16.5 25.7 19.2 4.5 0.0 2.5 17.0 375.0 +Auzeville 2013 8 10 222 16.7 26.3 23.5 5.0 0.0 1.9 17.2 375.0 +Auzeville 2013 8 11 223 13.4 29.5 26.3 4.9 0.0 0.7 17.1 375.0 +Auzeville 2013 8 12 224 14.4 32.5 25.0 5.1 0.0 1.0 18.8 375.0 +Auzeville 2013 8 13 225 20.3 27.8 19.5 5.2 0.0 2.5 18.2 375.0 +Auzeville 2013 8 14 226 15.1 28.3 26.1 5.4 0.0 1.7 14.3 375.0 +Auzeville 2013 8 15 227 11.8 30.9 25.9 4.7 0.0 0.6 15.2 375.0 +Auzeville 2013 8 16 228 13.7 31.3 23.5 4.9 2.0 1.7 17.7 375.0 +Auzeville 2013 8 17 229 17.9 29.2 22.9 4.9 0.0 1.2 19.2 375.0 +Auzeville 2013 8 18 230 14.0 31.9 25.0 4.8 0.0 0.7 17.4 375.0 +Auzeville 2013 8 19 231 17.7 24.1 7.1 2.5 0.0 2.3 19.0 375.0 +Auzeville 2013 8 20 232 12.5 27.5 25.4 4.7 0.0 1.2 14.0 375.0 +Auzeville 2013 8 21 233 10.1 31.6 25.3 4.5 0.0 0.7 13.8 375.0 +Auzeville 2013 8 22 234 12.0 29.3 24.5 4.8 0.0 2.6 16.5 375.0 +Auzeville 2013 8 23 235 19.0 27.6 14.1 3.6 0.0 1.9 20.6 375.0 +Auzeville 2013 8 24 236 18.6 24.8 9.1 3.4 0.0 3.0 18.4 375.0 +Auzeville 2013 8 25 237 15.2 24.8 18.4 4.1 2.5 2.2 16.4 375.0 +Auzeville 2013 8 26 238 15.8 23.7 16.6 3.7 0.0 2.2 16.6 375.0 +Auzeville 2013 8 27 239 15.4 25.7 14.9 3.7 0.0 2.1 16.2 375.0 +Auzeville 2013 8 28 240 14.1 25.5 20.1 4.0 0.0 1.6 14.5 375.0 +Auzeville 2013 8 29 241 13.8 26.8 22.3 4.4 0.0 1.5 14.3 375.0 +Auzeville 2013 8 30 242 10.6 26.9 21.6 4.1 0.0 1.6 12.3 375.0 +Auzeville 2013 8 31 243 15.1 27.1 20.9 4.6 0.0 2.1 13.3 375.0 +Auzeville 2013 9 1 244 16.0 27.5 21.3 4.8 0.0 2.3 15.1 375.0 +Auzeville 2013 9 2 245 13.7 28.1 21.1 4.1 0.0 1.1 13.3 375.0 +Auzeville 2013 9 3 246 9.5 31.9 22.6 4.2 0.0 1.0 12.7 375.0 +Auzeville 2013 9 4 247 11.7 31.7 22.3 5.0 0.0 2.8 15.0 375.0 +Auzeville 2013 9 5 248 18.8 30.7 21.6 5.5 0.0 3.0 18.4 375.0 +Auzeville 2013 9 6 249 18.9 26.1 11.8 3.0 8.5 1.4 19.6 375.0 +Auzeville 2013 9 7 250 16.3 17.8 2.1 0.5 8.5 1.5 18.1 375.0 +Auzeville 2013 9 8 251 15.6 18.4 5.8 1.6 0.5 1.6 16.7 375.0 +Auzeville 2013 9 9 252 10.8 23.7 19.8 3.3 3.0 1.3 13.6 375.0 +Auzeville 2013 9 10 253 15.7 22.0 9.6 2.5 2.0 2.0 17.6 375.0 +Auzeville 2013 9 11 254 13.2 21.6 14.6 3.3 0.0 2.3 13.1 375.0 +Auzeville 2013 9 12 255 13.2 21.9 13.6 3.2 0.0 2.7 13.2 375.0 +Auzeville 2013 9 13 256 15.7 24.3 14.5 3.0 0.0 1.5 18.2 375.0 +Auzeville 2013 9 14 257 11.2 26.6 18.2 3.1 4.5 1.1 15.9 375.0 +Auzeville 2013 9 15 258 12.4 19.1 14.1 3.0 0.0 2.8 12.9 375.0 +Auzeville 2013 9 16 259 8.7 21.0 11.5 2.2 0.5 2.0 13.2 375.0 +Auzeville 2013 9 17 260 13.3 19.2 7.0 2.1 0.0 2.5 13.8 375.0 +Auzeville 2013 9 18 261 15.7 23.1 11.5 2.9 3.0 3.1 17.6 375.0 +Auzeville 2013 9 19 262 14.1 20.6 11.9 2.9 0.5 3.1 14.4 375.0 +Auzeville 2013 9 20 263 14.2 22.3 11.7 2.3 0.0 1.5 16.6 375.0 +Auzeville 2013 9 21 264 11.9 23.6 18.2 2.9 0.0 1.2 15.4 375.0 +Auzeville 2013 9 22 265 8.7 27.9 18.9 2.9 0.0 0.7 14.1 375.0 +Auzeville 2013 9 23 266 9.9 27.3 18.9 3.6 0.0 2.5 13.5 375.0 +Auzeville 2013 9 24 267 16.9 27.4 18.0 4.3 0.0 3.8 19.2 375.0 +Auzeville 2013 9 25 268 16.8 28.3 16.7 4.0 0.0 3.6 21.0 375.0 +Auzeville 2013 9 26 269 17.8 27.6 15.9 4.0 0.0 4.1 21.0 375.0 +Auzeville 2013 9 27 270 20.1 26.8 12.7 4.1 0.0 5.3 22.5 375.0 +Auzeville 2013 9 28 271 20.2 24.4 8.7 3.0 0.0 4.2 21.3 375.0 +Auzeville 2013 9 29 272 14.7 24.3 10.3 2.2 0.5 1.4 17.4 375.0 +Auzeville 2013 9 30 273 11.9 23.6 9.8 1.8 0.0 0.7 15.8 375.0 +Auzeville 2013 10 1 274 12.3 29.2 12.6 2.5 0.0 0.9 17.4 375.0 +Auzeville 2013 10 2 275 15.2 30.5 11.8 3.4 0.0 3.0 19.8 375.0 +Auzeville 2013 10 3 276 19.4 20.7 2.6 1.8 3.5 6.9 19.9 375.0 +Auzeville 2013 10 4 277 17.2 19.8 1.1 0.7 32.5 3.0 18.9 375.0 +Auzeville 2013 10 5 278 15.2 22.1 12.4 2.3 5.5 2.0 18.0 375.0 +Auzeville 2013 10 6 279 13.7 20.0 10.5 2.1 0.5 2.0 14.8 375.0 +Auzeville 2013 10 7 280 10.9 21.6 15.7 2.2 0.0 1.3 13.8 375.0 +Auzeville 2013 10 8 281 9.1 21.8 13.1 1.9 0.0 1.5 13.3 375.0 +Auzeville 2013 10 9 282 14.1 19.1 6.6 1.9 0.0 1.8 13.2 375.0 +Auzeville 2013 10 10 283 12.8 15.4 4.7 1.8 0.5 2.3 11.7 375.0 +Auzeville 2013 10 11 284 3.8 15.3 11.5 1.5 0.0 1.3 8.2 375.0 +Auzeville 2013 10 12 285 3.0 18.7 10.9 1.5 0.0 1.6 9.0 375.0 +Auzeville 2013 10 13 286 6.8 21.6 12.9 1.7 0.0 0.9 10.8 375.0 +Auzeville 2013 10 14 287 9.1 22.1 12.6 1.7 0.0 0.9 12.6 375.0 +Auzeville 2013 10 15 288 13.1 20.6 5.2 1.3 2.5 1.6 15.0 375.0 +Auzeville 2013 10 16 289 15.8 23.1 7.3 1.6 1.5 1.4 19.0 375.0 +Auzeville 2013 10 17 290 14.0 20.6 11.7 1.7 0.0 0.8 15.4 375.0 +Auzeville 2013 10 18 291 11.2 21.2 12.1 2.3 0.0 4.0 13.8 375.0 +Auzeville 2013 10 19 292 15.9 22.4 6.2 1.9 1.5 5.1 18.4 375.0 +Auzeville 2013 10 20 293 15.6 23.9 10.4 1.9 0.0 2.3 19.3 375.0 +Auzeville 2013 10 21 294 16.9 23.4 8.9 2.2 0.0 4.1 19.3 375.0 +Auzeville 2013 10 22 295 18.5 22.5 4.9 2.2 0.0 4.3 19.0 375.0 +Auzeville 2013 10 23 296 13.7 24.7 12.1 1.8 0.0 1.0 16.2 375.0 +Auzeville 2013 10 24 297 9.5 21.4 10.8 1.6 0.0 3.9 14.0 375.0 +Auzeville 2013 10 25 298 17.8 22.6 5.1 2.3 0.0 6.1 18.5 375.0 +Auzeville 2013 10 26 299 19.2 23.6 5.8 2.3 0.0 4.5 20.6 375.0 +Auzeville 2013 10 27 300 15.0 23.7 9.9 1.7 0.0 1.0 16.6 375.0 +Auzeville 2013 10 28 301 12.4 24.6 10.7 2.2 6.5 3.0 15.5 375.0 +Auzeville 2013 10 29 302 11.5 16.3 7.8 1.4 0.0 1.9 12.4 375.0 +Auzeville 2013 10 30 303 7.5 14.3 10.7 1.1 0.0 1.6 10.2 375.0 +Auzeville 2013 10 31 304 2.2 15.3 11.4 0.8 0.0 0.9 8.7 375.0 +Auzeville 2013 11 1 305 0.3 16.6 6.3 1.0 0.5 1.9 8.2 375.0 +Auzeville 2013 11 2 306 13.5 23.4 8.8 1.7 7.5 1.9 15.9 375.0 +Auzeville 2013 11 3 307 12.4 15.5 4.2 1.1 4.5 1.7 12.9 375.0 +Auzeville 2013 11 4 308 9.6 14.7 3.3 0.9 7.0 2.5 12.0 375.0 +Auzeville 2013 11 5 309 11.8 17.6 1.8 0.7 11.5 3.6 14.7 375.0 +Auzeville 2013 11 6 310 14.6 19.3 4.8 1.1 1.5 2.1 17.0 375.0 +Auzeville 2013 11 7 311 11.1 21.2 8.9 0.9 0.5 0.6 16.3 375.0 +Auzeville 2013 11 8 312 10.0 18.6 4.4 0.9 1.0 1.4 14.3 375.0 +Auzeville 2013 11 9 313 9.6 14.9 7.1 1.1 8.0 2.1 10.8 375.0 +Auzeville 2013 11 10 314 10.8 14.0 1.6 0.6 8.5 4.0 12.4 375.0 +Auzeville 2013 11 11 315 8.2 14.0 8.8 1.3 0.5 2.4 8.8 375.0 +Auzeville 2013 11 12 316 8.3 13.5 2.6 0.3 4.0 1.3 12.2 375.0 +Auzeville 2013 11 13 317 12.2 14.3 2.1 0.9 1.0 2.7 13.1 375.0 +Auzeville 2013 11 14 318 7.5 12.0 6.0 1.2 2.0 3.8 9.4 375.0 +Auzeville 2013 11 15 319 4.9 6.0 1.5 0.5 6.0 2.9 7.6 375.0 +Auzeville 2013 11 16 320 2.5 6.6 1.9 0.2 5.5 0.8 7.7 375.0 +Auzeville 2013 11 17 321 5.9 8.6 1.8 0.2 4.0 0.8 9.5 375.0 +Auzeville 2013 11 18 322 7.4 8.5 1.0 0.1 18.0 1.5 9.9 375.0 +Auzeville 2013 11 19 323 5.6 8.3 2.4 0.7 12.0 3.4 8.7 375.0 +Auzeville 2013 11 20 324 3.0 8.8 6.4 1.1 6.5 3.2 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19.2 4.8 0.0 3.0 18.4 400.0 +Auzeville 2014 7 22 203 15.2 26.3 25.6 5.3 0.0 2.3 17.1 400.0 +Auzeville 2014 7 23 204 15.7 29.7 25.6 5.3 0.0 1.3 17.9 400.0 +Auzeville 2014 7 24 205 18.2 30.4 23.8 5.3 9.0 1.2 20.6 400.0 +Auzeville 2014 7 25 206 19.0 22.3 7.5 2.0 1.5 1.3 21.4 400.0 +Auzeville 2014 7 26 207 14.3 27.9 21.9 4.4 0.0 1.3 19.8 400.0 +Auzeville 2014 7 27 208 18.7 28.1 25.9 5.7 0.0 1.9 19.6 400.0 +Auzeville 2014 7 28 209 17.1 25.6 13.1 3.5 7.0 2.0 20.3 400.0 +Auzeville 2014 7 29 210 14.6 22.8 16.3 4.0 0.5 3.0 15.1 400.0 +Auzeville 2014 7 30 211 16.5 25.7 18.6 4.3 0.0 2.2 18.3 400.0 +Auzeville 2014 7 31 212 14.1 27.9 26.5 5.1 0.0 1.1 17.1 400.0 +Auzeville 2014 8 1 213 14.4 28.5 18.8 3.9 10.0 1.0 19.7 400.0 +Auzeville 2014 8 2 214 17.9 26.7 18.6 4.0 0.5 0.9 21.5 400.0 +Auzeville 2014 8 3 215 15.1 28.4 23.4 4.6 3.0 1.1 20.3 400.0 +Auzeville 2014 8 4 216 17.7 23.9 13.7 3.0 5.0 1.2 20.9 400.0 +Auzeville 2014 8 5 217 17.5 26.4 26.1 5.3 0.0 1.6 17.9 400.0 +Auzeville 2014 8 6 218 13.1 27.3 21.9 4.3 0.0 1.3 16.3 400.0 +Auzeville 2014 8 7 219 17.4 28.4 16.6 3.7 0.0 0.9 21.2 400.0 +Auzeville 2014 8 8 220 16.9 31.7 22.0 5.1 13.5 1.9 23.7 400.0 +Auzeville 2014 8 9 221 17.1 26.9 17.8 4.0 0.0 2.4 21.4 400.0 +Auzeville 2014 8 10 222 19.7 30.7 21.9 5.3 4.0 2.6 25.0 400.0 +Auzeville 2014 8 11 223 18.2 23.0 14.9 3.7 0.0 2.0 17.0 400.0 +Auzeville 2014 8 12 224 15.5 24.9 19.3 3.8 5.5 0.9 16.3 400.0 +Auzeville 2014 8 13 225 16.2 22.6 20.1 4.5 0.5 3.0 16.0 400.0 +Auzeville 2014 8 14 226 14.6 24.3 18.9 4.3 0.0 2.4 15.6 400.0 +Auzeville 2014 8 15 227 14.2 21.7 14.4 3.2 2.0 2.0 14.8 400.0 +Auzeville 2014 8 16 228 13.1 23.3 19.9 4.0 0.0 1.8 14.0 400.0 +Auzeville 2014 8 17 229 9.9 26.2 26.1 4.3 0.0 0.7 14.1 400.0 +Auzeville 2014 8 18 230 10.8 26.7 21.7 3.9 1.5 1.2 15.8 400.0 +Auzeville 2014 8 19 231 16.8 22.2 10.4 2.9 0.0 1.5 15.0 400.0 +Auzeville 2014 8 20 232 11.9 21.4 14.5 3.0 0.0 1.8 12.7 400.0 diff --git a/inst/stics/V11.0.0/example/AuzevilleJ_sta.xml b/inst/stics/V11.0.0/example/AuzevilleJ_sta.xml new file mode 100644 index 0000000..ec99c59 --- /dev/null +++ b/inst/stics/V11.0.0/example/AuzevilleJ_sta.xml @@ -0,0 +1,86 @@ + + + + 2.50000 + 0.00000 + 0.02 + 43.6 + 1000.00000 + 20.000000 + + + + + + + + 50.00000 + 0.23000 + 0.18000 + 0.62000 + 1.00000 + + + + + 0.70000 + 6.00000 + 0.50000 + 0.16000 + 0.00400 + 0.59000 + + + + + + diff --git a/inst/stics/V11.0.0/example/BareSoil.obs b/inst/stics/V11.0.0/example/BareSoil.obs new file mode 100644 index 0000000..a606e95 --- /dev/null +++ b/inst/stics/V11.0.0/example/BareSoil.obs @@ -0,0 +1,11 @@ +ian;mo;jo;jul;HR(1);HR(2);HR(3);HR(4);resmes;AZnit(1);AZnit(2);AZnit(3);AZnit(4) +1998; 8; 3; 215; 16.4; 13.4; 15.1; 17.3; 266.70; 13.7; 4.9; 6.5; 26.4 +1998; 8; 7; 219; 15.3; 13.0; 15.1; 17.3; 260.72; 14.5; 3.0; 6.5; 26.4 +1998; 8; 25; 237; 15.3; 13.3; 15.2; 16.1; 257.06; 25.4; 3.9; 6.0; 26.1 +1998; 9; 10; 253; 16.9; 13.4; 15.8; 16.0; 265.92; 33.1; 5.7; 8.3; 26.4 +1998; 9; 24; 267; 17.7; 14.6; 15.9; 17.5; 281.39; 29.4; 8.4; 6.3; 25.4 +1998; 10; 9; 282; 21.7; 15.7; 16.7; 16.7; 301.60; 26.5; 8.8; 10.6; 21.2 +1998; 10; 23; 296; 21.1; 19.5; 18.0; 15.9; 317.91; 28.5; 26.7; 11.9; 22.1 +1998; 11; 6; 310; 21.6; 21.2; 24.4; 21.0; 378.74; 10.8; 19.7; 25.4; 31.6 +1998; 11; 20; 324; 27.3; 21.5; 23.1; 20.0; 391.79; 10.9; 14.2; 31.5; 30.9 +1998; 12; 10; 344; 24.7; 22.7; 24.1; 18.7; 385.53; 14.1; 15.6; 26.6; 21.8 diff --git a/inst/stics/V11.0.0/example/Ble_tec.xml b/inst/stics/V11.0.0/example/Ble_tec.xml new file mode 100644 index 0000000..96e4c9c --- /dev/null +++ b/inst/stics/V11.0.0/example/Ble_tec.xml @@ -0,0 +1,405 @@ + + + + + + + + + + + + + + + 297 + 1 + 2.00 + 42.00 + 60.00 + 0.00 + 0.00 + + + + + + + + + + + + + 297 + 0.00 + 22.00 + + + + + 297 + 2.50000 + 311.00000 + 2 + + + + + + + + 1.00000 + + + 60.00000 + + + 0.00000 + + + + + + + + + + 417 + 60.00 + 1 + + + 447 + 120.00 + 1 + + + 482 + 120.00 + 1 + + + + + + 700 + straw+roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/Colza_tec.xml b/inst/stics/V11.0.0/example/Colza_tec.xml new file mode 100644 index 0000000..1b30555 --- /dev/null +++ b/inst/stics/V11.0.0/example/Colza_tec.xml @@ -0,0 +1,380 @@ + + + + + + + + + + + + + + + 252 + 1 + 2.00 + 42.00 + 60.00 + 0.00 + 0.00 + + + + + + + + + + + + + 252 + 0.00 + 28.00 + + + + + 253 + 4.00000 + 55.00000 + 3 + + + + + + + + 1.00000 + + + 60.00000 + + + 0.00000 + + + + + + + + + + 416 + 78.00 + 2 + + + 439 + 57.00 + 2 + + + + + + 700 + straw+roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/DurumWheat.obs b/inst/stics/V11.0.0/example/DurumWheat.obs new file mode 100644 index 0000000..015b7a5 --- /dev/null +++ b/inst/stics/V11.0.0/example/DurumWheat.obs @@ -0,0 +1,7 @@ +ian;mo;jo;jul;lai(n);masec(n);mafruit;HR(1);HR(2);HR(3);HR(4);AZnit(1);AZnit(2);AZnit(3);AZnit(4);QNplante +2000; 10; 24; 298; -999.99; -999.99; -999.99; 14.65; 15.59; 15.14; 15.72; 3.10; 3.39; 4.15; 1.41; -999.99 +2001; 1; 22; 22; 0.960; 0.835; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 24.05 +2001; 1; 29; 29; 1.12; 0.783; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 25.66 +2001; 4; 17; 107; 3.96; 8.192; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 226.27 +2001; 5; 22; 142; -999.99; -999.99; -999.99; 12.27; 13.26; 15.68; 19.16; 18.98; 19.8; 10.53; 11.03; -999.99 +2001; 6; 25; 176; -999.99; 18.605; 6.4; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 157.21 diff --git a/inst/stics/V11.0.0/example/Fraise_tec.xml b/inst/stics/V11.0.0/example/Fraise_tec.xml new file mode 100644 index 0000000..545dd44 --- /dev/null +++ b/inst/stics/V11.0.0/example/Fraise_tec.xml @@ -0,0 +1,356 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + 11 + 20.00000 + 3.60000 + 2 + + + + + + + + 1.00000 + + + 25.00000 + + + 0.00000 + + + + + + + + + + + + + 200 + roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/Mais_tec.xml b/inst/stics/V11.0.0/example/Mais_tec.xml new file mode 100644 index 0000000..2adcb2c --- /dev/null +++ b/inst/stics/V11.0.0/example/Mais_tec.xml @@ -0,0 +1,439 @@ + + + + + + + + + + + + + + + 112 + 1 + 1.00 + 42.00 + 60.00 + 0.00 + 0.00 + + + + + + + + + + + + + 112 + 0.00 + 25.00 + + + + + 117 + 5.00000 + 9.50000 + 4 + + + + + + + + 1.00000 + + + 120.00000 + + + 0.11000 + + + + + + + + + + 112 + 220.00 + 2 + + + + + + 300 + straw+roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/Miscanthus.2006 b/inst/stics/V11.0.0/example/Miscanthus.2006 new file mode 100644 index 0000000..a26fd8f --- /dev/null +++ b/inst/stics/V11.0.0/example/Miscanthus.2006 @@ -0,0 +1,365 @@ +Mons 2006 1 1 1 2.0 5.1 0.9 0.0 2.4 3.7 7.8 350.0 +Mons 2006 1 2 2 -0.5 5.9 4.0 0.0 0.0 1.8 7.5 350.0 +Mons 2006 1 3 3 -1.3 1.3 2.5 0.0 0.8 1.5 6.5 350.0 +Mons 2006 1 4 4 0.1 5.0 3.8 0.0 0.0 3.1 6.7 350.0 +Mons 2006 1 5 5 -1.1 0.6 1.7 0.0 0.0 3.7 6.1 350.0 +Mons 2006 1 6 6 -0.3 2.6 2.8 0.0 0.0 2.9 6.2 350.0 +Mons 2006 1 7 7 0.3 2.8 3.9 0.0 0.0 2.9 6.6 350.0 +Mons 2006 1 8 8 0.7 3.5 1.6 0.3 0.0 5.1 6.7 350.0 +Mons 2006 1 9 9 -0.8 3.8 4.2 0.0 0.0 3.1 6.1 350.0 +Mons 2006 1 10 10 -2.9 2.8 2.6 0.0 0.0 3.7 6.1 350.0 +Mons 2006 1 11 11 0.9 5.1 1.0 0.0 4.7 3.2 7.9 350.0 +Mons 2006 1 12 12 1.3 4.2 1.2 0.0 0.0 2.6 7.6 350.0 +Mons 2006 1 13 13 0.8 1.9 1.3 0.0 0.0 4.2 6.8 350.0 +Mons 2006 1 14 14 -0.6 5.0 4.8 0.0 0.0 3.8 6.5 350.0 +Mons 2006 1 15 15 -2.0 1.0 5.0 0.0 0.0 5.1 5.6 350.0 +Mons 2006 1 16 16 -2.8 6.0 2.3 0.0 4.7 4.2 7.0 350.0 +Mons 2006 1 17 17 3.9 7.4 1.0 0.0 7.8 4.0 9.3 350.0 +Mons 2006 1 18 18 2.4 7.4 2.0 0.0 2.4 1.4 8.7 350.0 +Mons 2006 1 19 19 4.1 9.8 1.8 0.0 0.0 2.4 10.6 350.0 +Mons 2006 1 20 20 5.3 9.8 1.5 0.3 0.8 4.5 10.0 350.0 +Mons 2006 1 21 21 0.7 7.5 4.6 0.0 0.0 2.3 7.7 350.0 +Mons 2006 1 22 22 1.3 4.1 3.2 0.2 0.0 2.9 6.5 350.0 +Mons 2006 1 23 23 -1.0 2.4 6.1 0.1 0.0 3.1 5.2 350.0 +Mons 2006 1 24 24 -4.2 1.1 6.2 0.1 0.0 2.8 4.2 350.0 +Mons 2006 1 25 25 -6.1 2.5 5.3 0.0 0.0 2.0 5.4 350.0 +Mons 2006 1 26 26 -0.6 1.2 2.0 0.6 0.0 5.9 5.5 350.0 +Mons 2006 1 27 27 -5.9 -3.7 2.2 0.2 0.0 4.1 4.0 350.0 +Mons 2006 1 28 28 -6.1 0.6 4.8 0.1 0.0 4.5 4.6 350.0 +Mons 2006 1 29 29 -3.5 4.6 7.0 0.8 0.0 6.0 4.5 350.0 +Mons 2006 1 30 30 -3.7 4.0 7.0 0.4 0.0 5.8 5.2 350.0 +Mons 2006 1 31 31 -1.3 3.6 6.1 0.1 0.0 3.6 5.9 350.0 +Mons 2006 2 1 32 -8.1 -1.1 3.7 0.0 0.0 1.1 4.6 350.0 +Mons 2006 2 2 33 -3.3 -1.5 0.8 0.0 0.0 1.6 5.3 350.0 +Mons 2006 2 3 34 -4.7 1.3 1.3 0.0 0.0 3.3 5.2 350.0 +Mons 2006 2 4 35 -1.0 4.0 2.3 0.1 0.0 2.5 7.0 350.0 +Mons 2006 2 5 36 0.3 4.2 1.4 0.0 0.0 1.9 7.4 350.0 +Mons 2006 2 6 37 1.5 5.9 1.7 0.2 0.0 1.9 7.6 350.0 +Mons 2006 2 7 38 2.0 6.4 1.1 0.0 0.0 3.6 8.5 350.0 +Mons 2006 2 8 39 3.3 6.6 3.1 0.4 1.8 4.7 8.1 350.0 +Mons 2006 2 9 40 0.3 5.0 6.2 0.4 0.0 3.6 6.5 350.0 +Mons 2006 2 10 41 -1.3 5.7 6.8 0.2 0.0 2.6 6.6 350.0 +Mons 2006 2 11 42 -2.8 3.9 4.9 0.1 0.0 0.6 6.2 350.0 +Mons 2006 2 12 43 -2.4 2.5 2.9 0.2 10.2 2.4 6.1 350.0 +Mons 2006 2 13 44 0.1 4.3 2.2 0.2 0.0 3.1 7.1 350.0 +Mons 2006 2 14 45 2.1 6.6 2.9 0.3 4.6 3.7 8.2 350.0 +Mons 2006 2 15 46 2.9 11.9 3.8 0.2 12.9 5.9 10.4 350.0 +Mons 2006 2 16 47 5.9 9.5 3.6 0.7 3.7 4.5 9.5 350.0 +Mons 2006 2 17 48 3.2 9.0 4.1 0.8 6.5 6.7 8.5 350.0 +Mons 2006 2 18 49 1.9 8.2 4.0 0.4 12.9 3.2 8.4 350.0 +Mons 2006 2 19 50 2.9 7.0 1.8 0.1 5.5 3.9 8.8 350.0 +Mons 2006 2 20 51 1.6 5.2 1.4 0.0 0.0 4.3 7.8 350.0 +Mons 2006 2 21 52 1.0 2.9 2.3 0.1 3.7 5.0 7.1 350.0 +Mons 2006 2 22 53 2.5 4.9 2.8 0.5 0.0 4.0 7.5 350.0 +Mons 2006 2 23 54 -0.4 1.0 4.1 0.4 0.0 3.6 6.0 350.0 +Mons 2006 2 24 55 -0.5 5.0 8.6 0.6 0.9 4.4 6.4 350.0 +Mons 2006 2 25 56 -1.0 2.8 9.1 0.5 0.9 4.6 6.0 350.0 +Mons 2006 2 26 57 -2.5 0.8 4.8 0.5 0.0 5.0 5.2 350.0 +Mons 2006 2 27 58 -2.8 3.7 4.8 0.3 0.9 1.8 6.4 350.0 +Mons 2006 2 28 59 0.2 2.9 3.9 0.5 2.8 4.3 6.5 350.0 +Mons 2006 3 1 60 -2.7 4.6 10.5 0.7 0.0 4.0 5.6 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2.4 14.9 14.3 1.4 0.0 2.3 9.8 350.0 +Mons 2009 3 18 77 3.2 15.5 17.9 2.4 0.0 2.8 6.8 350.0 +Mons 2009 3 19 78 3.0 14.1 16.7 2.5 0.0 3.8 7.0 350.0 +Mons 2009 3 20 79 0.8 11.8 17.6 2.2 0.0 3.1 5.7 350.0 +Mons 2009 3 21 80 -2.0 12.1 17.8 1.7 0.0 1.4 5.2 350.0 +Mons 2009 3 22 81 0.8 12.5 11.8 1.5 0.0 3.4 8.0 350.0 +Mons 2009 3 23 82 5.6 13.1 10.6 2.4 1.2 6.2 8.9 350.0 +Mons 2009 3 24 83 3.3 8.8 9.8 1.9 3.6 5.7 7.3 350.0 +Mons 2009 3 25 84 3.2 11.3 9.9 1.7 10.8 6.4 8.8 350.0 +Mons 2009 3 26 85 4.6 9.1 3.6 0.4 1.8 5.6 9.9 350.0 +Mons 2009 3 27 86 4.3 9.9 10.2 1.6 7.2 5.0 8.7 350.0 +Mons 2009 3 28 87 4.4 9.4 10.4 1.6 5.4 4.9 8.5 350.0 +Mons 2009 3 29 88 0.5 9.8 13.7 1.7 0.0 3.2 7.0 350.0 +Mons 2009 3 30 89 -0.9 10.5 17.1 1.7 0.0 1.2 6.3 350.0 +Mons 2009 3 31 90 0.8 13.6 20.1 2.4 0.0 3.3 7.4 350.0 +Mons 2009 4 1 91 3.4 15.8 20.3 3.4 0.0 5.4 8.0 350.0 +Mons 2009 4 2 92 5.4 18.1 19.4 2.9 0.0 3.3 10.2 350.0 +Mons 2009 4 3 93 4.1 15.0 16.2 1.8 0.0 1.7 10.9 350.0 +Mons 2009 4 4 94 6.2 13.2 11.4 1.6 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16.6 21.9 3.0 0.0 2.4 10.0 350.0 +Mons 2009 4 23 113 2.6 16.8 25.5 3.4 0.0 2.0 7.9 350.0 +Mons 2009 4 24 114 3.7 17.6 24.9 3.9 0.0 3.5 8.6 350.0 +Mons 2009 4 25 115 5.1 16.0 14.1 2.5 0.0 3.0 9.9 350.0 +Mons 2009 4 26 116 7.5 15.0 10.5 1.7 1.6 0.9 11.4 350.0 +Mons 2009 4 27 117 7.4 15.0 13.9 2.8 6.8 4.5 10.4 350.0 +Mons 2009 4 28 118 6.1 13.7 18.2 2.7 0.0 2.5 9.6 350.0 +Mons 2009 4 29 119 5.5 16.5 15.8 2.4 1.0 1.4 10.4 350.0 +Mons 2009 4 30 120 3.4 18.6 23.3 3.1 0.0 1.3 10.2 350.0 +Mons 2009 5 1 121 6.3 20.1 20.3 3.3 0.0 1.8 11.2 350.0 +Mons 2009 5 2 122 4.1 17.3 13.9 2.0 0.0 1.8 11.9 350.0 +Mons 2009 5 3 123 4.7 15.1 13.0 2.1 0.5 2.4 10.3 350.0 +Mons 2009 5 4 124 4.6 14.3 17.9 2.7 0.0 2.0 8.9 350.0 +Mons 2009 5 5 125 7.3 15.3 6.0 1.4 0.0 3.6 12.1 350.0 +Mons 2009 5 6 126 10.5 18.0 14.2 3.5 0.0 4.0 11.3 350.0 +Mons 2009 5 7 127 5.3 21.6 20.7 3.3 0.5 1.7 12.4 350.0 +Mons 2009 5 8 128 8.2 17.9 15.2 3.3 0.0 3.1 10.3 350.0 +Mons 2009 5 9 129 3.3 17.9 16.8 2.6 0.0 2.1 10.7 350.0 +Mons 2009 5 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165 13.3 25.1 24.8 4.7 0.0 1.7 18.3 350.0 +Mons 2009 6 15 166 13.0 19.6 10.3 2.2 5.0 1.7 16.0 350.0 +Mons 2009 6 16 167 9.3 21.4 27.0 4.6 0.0 2.5 13.7 350.0 +Mons 2009 6 17 168 9.7 23.8 28.2 5.0 0.0 2.3 14.5 350.0 +Mons 2009 6 18 169 13.8 22.5 24.2 5.0 0.0 2.6 14.4 350.0 +Mons 2009 6 19 170 12.2 19.5 24.4 4.9 0.0 3.1 12.3 350.0 +Mons 2009 6 20 171 7.4 17.5 13.2 2.2 1.0 1.5 12.9 350.0 +Mons 2009 6 21 172 8.6 19.4 16.5 2.9 0.5 1.9 13.4 350.0 +Mons 2009 6 22 173 7.1 19.4 23.2 3.9 0.0 2.0 11.7 350.0 +Mons 2009 6 23 174 8.0 21.7 28.9 4.9 0.0 2.9 13.1 350.0 +Mons 2009 6 24 175 11.7 24.3 30.0 6.3 0.0 3.6 12.8 350.0 +Mons 2009 6 25 176 11.8 26.8 26.0 5.1 0.0 2.3 17.2 350.0 +Mons 2009 6 26 177 14.8 21.3 14.1 2.8 1.0 2.5 18.7 350.0 +Mons 2009 6 27 178 14.0 24.4 21.8 4.3 0.0 2.1 17.8 350.0 +Mons 2009 6 28 179 11.6 26.6 23.1 4.3 0.0 1.1 17.9 350.0 +Mons 2009 6 29 180 13.8 28.3 28.8 5.7 0.0 1.6 18.1 350.0 +Mons 2009 6 30 181 14.8 28.2 28.5 5.9 0.0 2.2 18.8 350.0 +Mons 2009 7 1 182 14.3 27.7 26.8 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999 + + + 999 + 999 + 999 + + + + + + 365 + stubbleveg + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/Miscanthus_2013.obs b/inst/stics/V11.0.0/example/Miscanthus_2013.obs new file mode 100644 index 0000000..a49aea7 --- /dev/null +++ b/inst/stics/V11.0.0/example/Miscanthus_2013.obs @@ -0,0 +1,4 @@ +ian;mo;jo;jul;QNplantenp;masecnp;HR(1);HR(2);HR(3);HR(4);HR(5);resmes;AZnit(1);AZnit(2);AZnit(3);AZnit(4);AZamm(1);AZamm(2);AZamm(3);AZamm(4);azomes;ammomes;SMNmes +2013;3;28;87;-999.99;-999.99;23.6;21.9;21.7;22;23;518.9;9.7;5.7;0.8;0.4;17.4;4.2;1.5;1.7;16.7;24.8;41.5 +2013;10;29;302;-999.99;-999.99;21.8;20.7;21.6;21;21.3;495.5;13.8;0.5;0;0;2.5;1.6;1.3;1.8;14.3;7.2;21.5 +2013;12;29;363;44.4;16.7;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99 diff --git a/inst/stics/V11.0.0/example/Miscanthus_2013_tec.xml b/inst/stics/V11.0.0/example/Miscanthus_2013_tec.xml new file mode 100644 index 0000000..5e18877 --- /dev/null +++ b/inst/stics/V11.0.0/example/Miscanthus_2013_tec.xml @@ -0,0 +1,458 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + 999 + 1 + 1.50 + 1 + + + + + + + + 1.0 + + + 150 + + + 0.020 + + + + + + + + + + 999 + 999 + 999 + + + 999 + 999 + 999 + + + + + + 364 + stubbleveg + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/Miscanthus_2014.obs b/inst/stics/V11.0.0/example/Miscanthus_2014.obs new file mode 100644 index 0000000..ea471cc --- /dev/null +++ b/inst/stics/V11.0.0/example/Miscanthus_2014.obs @@ -0,0 +1,4 @@ +ian;mo;jo;jul;QNplantenp;masecnp;HR(1);HR(2);HR(3);HR(4);HR(5);resmes;AZnit(1);AZnit(2);AZnit(3);AZnit(4);AZamm(1);AZamm(2);AZamm(3);AZamm(4);azomes;ammomes;SMNmes +2014;3;18;77;-999.99;-999.99;24;21.6;21.5;22;23.4;517.9;16.9;9.3;2;0.6;20.4;3.8;1.7;1.4;28.9;27.3;56.2 +2014;11;12;316;-999.99;-999.99;21.2;19.6;19.5;19.5;21.2;463;8.7;0.7;0.2;0.2;5;1.3;0.7;1.1;9.8;8;17.8 +2014;12;29;363;46.5;20.8;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99 diff --git a/inst/stics/V11.0.0/example/Miscanthus_2014_tec.xml b/inst/stics/V11.0.0/example/Miscanthus_2014_tec.xml new file mode 100644 index 0000000..5e18877 --- /dev/null +++ b/inst/stics/V11.0.0/example/Miscanthus_2014_tec.xml @@ -0,0 +1,458 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + 999 + 1 + 1.50 + 1 + + + + + + + + 1.0 + + + 150 + + + 0.020 + + + + + + + + + + 999 + 999 + 999 + + + 999 + 999 + 999 + + + + + + 364 + stubbleveg + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/Miscanthus_2015.obs b/inst/stics/V11.0.0/example/Miscanthus_2015.obs new file mode 100644 index 0000000..4058c75 --- /dev/null +++ b/inst/stics/V11.0.0/example/Miscanthus_2015.obs @@ -0,0 +1,4 @@ +ian;mo;jo;jul;QNplantenp;masecnp;HR(1);HR(2);HR(3);HR(4);HR(5);resmes;AZnit(1);AZnit(2);AZnit(3);AZnit(4);AZamm(1);AZamm(2);AZamm(3);AZamm(4);azomes;ammomes;SMNmes +2015;3;13;72;-999.99;-999.99;23.1;21.7;21.6;22;23.3;515;2.1;1.1;0.2;0.2;11.7;4.1;0.7;0.6;3.6;17.1;20.7 +2015;11;4;308;-999.99;-999.99;20.9;17.4;16.5;17.5;20;417.8;9.6;1.1;0.5;0.7;3.4;1.3;0.9;1.7;11.9;7.2;19.1 +2015;12;29;363;41;14.8;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99 diff --git a/inst/stics/V11.0.0/example/Miscanthus_2015_tec.xml b/inst/stics/V11.0.0/example/Miscanthus_2015_tec.xml new file mode 100644 index 0000000..5e18877 --- /dev/null +++ b/inst/stics/V11.0.0/example/Miscanthus_2015_tec.xml @@ -0,0 +1,458 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + 999 + 1 + 1.50 + 1 + + + + + + + + 1.0 + + + 150 + + + 0.020 + + + + + + + + + + 999 + 999 + 999 + + + 999 + 999 + 999 + + + + + + 364 + stubbleveg + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/Miscanthus_ini.xml b/inst/stics/V11.0.0/example/Miscanthus_ini.xml new file mode 100644 index 0000000..c96b934 --- /dev/null +++ b/inst/stics/V11.0.0/example/Miscanthus_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + dor + 0 + 0 + 1 + + + 0.05 + 0 + 0 + 0 + 0 + + + + + + + + + + + + + + + + + + + 0 + 0 + 0 + 0 + 0 + + + 29.00000 + 33.00000 + 44.00000 + 57.0000 + 8.00000 + + + 2.6000 + 0.900000 + 0.30000 + 0.1000 + 0.1000 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/Miscanthus_sta.xml b/inst/stics/V11.0.0/example/Miscanthus_sta.xml new file mode 100644 index 0000000..9d840ac --- /dev/null +++ b/inst/stics/V11.0.0/example/Miscanthus_sta.xml @@ -0,0 +1,86 @@ + + + + 2 + 0 + 0.02 + 49.87 + 1000 + 12.0720938284058 + + + + + + + + 50 + 0.23 + 0.18 + 0.62 + 1 + + + + + 0.7 + 6 + 0.5 + 0.16 + 0.004 + 0.59 + + + + + + diff --git a/inst/stics/V11.0.0/example/Prairie_tec.xml b/inst/stics/V11.0.0/example/Prairie_tec.xml new file mode 100644 index 0000000..e32f204 --- /dev/null +++ b/inst/stics/V11.0.0/example/Prairie_tec.xml @@ -0,0 +1,381 @@ + + + + + + + + + + + + + + + 2 + 1 + 1.00 + 42.00 + 20.00 + 0.00 + 0.00 + + + + + + + + + + + + + 2 + 0.00 + 10.00 + + + + + 32 + 2.00000 + 200.00000 + 1 + + + + + + + + 1.00000 + + + 110.00000 + + + 0.02000 + + + + + + + + + + + + + 730 + straw+roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/Salade_tec.xml b/inst/stics/V11.0.0/example/Salade_tec.xml new file mode 100644 index 0000000..ff5d376 --- /dev/null +++ b/inst/stics/V11.0.0/example/Salade_tec.xml @@ -0,0 +1,361 @@ + + + + + + + + + + + + + + + + + + + + + + + + + 101 + 0.00 + 30.00 + + + + + 12 + 5.00000 + 14.00000 + 1 + + + + + + + + 1.00000 + + + 60.00000 + + + 0.56000 + + + + + + + + + + + + + 75 + roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/Soja_tec.xml b/inst/stics/V11.0.0/example/Soja_tec.xml new file mode 100644 index 0000000..5f11f90 --- /dev/null +++ b/inst/stics/V11.0.0/example/Soja_tec.xml @@ -0,0 +1,397 @@ + + + + + + + + + + + + + + + + + + + + + + + + + 182 + 0.00 + 25.00 + + + + + 183 + 4.00000 + 55.00000 + 1 + + + + + + + + 1.00000 + + + 160.00000 + + + 0.02000 + + + + + + + + + + + + + 310 + straw+roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/Solnu_tec.xml b/inst/stics/V11.0.0/example/Solnu_tec.xml new file mode 100644 index 0000000..6320f1f --- /dev/null +++ b/inst/stics/V11.0.0/example/Solnu_tec.xml @@ -0,0 +1,370 @@ + + + + + + + + + + + + + + + 215 + 1 + 2.98 + 42.00 + 76.00 + 0.00 + 0.00 + + + + + + + + + + + + + 215 + 0.00 + 4.00 + + + + + 290 + 999.00000 + 999.00000 + 1 + + + + + + + + 1.00000 + + + 120.00000 + + + 0.02000 + + + + + + + + + + + + + 999 + straw+roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/SugarCane.obs b/inst/stics/V11.0.0/example/SugarCane.obs new file mode 100644 index 0000000..dc3fa78 --- /dev/null +++ b/inst/stics/V11.0.0/example/SugarCane.obs @@ -0,0 +1,8 @@ +ian;mo;jo;jul;lai(n);masec(n);mafruit;QNplante;azomes;inn +1998; 11; 23; 327; 0.21; 0.194; -999.99; -999.99; -999.99; -999.99 +1998; 12; 22; 356; 0.81; 1.351; -999.99; -999.99; -999.99; -999.99 +1999; 2; 2; 33; 3.1; 6.31; -999.99; -999.99; -999.99; -999.99 +1999; 3; 22; 81; 4.151; 15.636; 4.095; 0.836; 25.011; 0.02 +1999; 5; 5; 125; 5.063; 28.309; 12.83; 0.774; 56.704; 0.073 +1999; 7; 20; 201; 5.639; 38.824; 20.493; 0.732; 76.51; 0.116 +1999; 10; 5; 278; 5.64; -999.99; 23.516; 0.735; 88.9; 0.119 diff --git a/inst/stics/V11.0.0/example/Toursol_tec.xml b/inst/stics/V11.0.0/example/Toursol_tec.xml new file mode 100644 index 0000000..2a371f7 --- /dev/null +++ b/inst/stics/V11.0.0/example/Toursol_tec.xml @@ -0,0 +1,369 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + 106 + 3.00000 + 6.22000 + 2 + + + + + + + + 1.00000 + + + 170.00000 + + + 0.11000 + + + + + + + + + + 107 + 80.00 + 2 + + + + + + 365 + straw+roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/Turmeric.obs b/inst/stics/V11.0.0/example/Turmeric.obs new file mode 100644 index 0000000..5ae0715 --- /dev/null +++ b/inst/stics/V11.0.0/example/Turmeric.obs @@ -0,0 +1,20 @@ +ian;mo;jo;jul;lai(n);masec(n);mafruit;QNplante;QNgrain;CNplante;CNgrain;concNO3sol(1);concNO3sol(2);concNO3sol(3);concNO3sol(4);concNO3sol(5) +2013;5;25;144;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;549.6734385;598.6573095;368.9911599;399.0635364;384.6783996 +2013;6;16;166;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;356.9622093;-999.99;457.2241326;390.8788896;498.8914254 +2013;6;20;170;0.32;0.24;0.48;2.56;-999.99;1.07;-999.99;741.8266236;613.228461;451.7677014;410.5964478;481.778073 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+2013;10;1;273;2.26;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;165.994;130.7;549.7;523.38;-999.99 +2013;10;5;277;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;828.8;200.7;543.3;519.38;502.5 +2013;10;10;282;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;713.05635;402.7838304;538.0785222;528.8397921;551.7196002 +2013;10;30;302;2.73;3.12;5.04;54.912;64.008;1.76;1.27;-999.99;762.3502455;535.1642919;584.5821972;127.9781136 +2013;11;21;324;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;-999.99;229.1081055;625.629441;554.7578403;577.0175994;566.7867909 +2013;11;24;327;3.2;4.4;8.96;73.92;89.6;1.68;1;-999.99;594.006942;571.7471829;564.864639;565.2366684 +2013;12;26;359;-999.99;7.12;10.24;60.52;149.504;0.85;1.46;-999.99;-999.99;-999.99;-999.99;-999.99 diff --git a/inst/stics/V11.0.0/example/aiadan4_tec.xml b/inst/stics/V11.0.0/example/aiadan4_tec.xml new file mode 100644 index 0000000..d90d97a --- /dev/null +++ b/inst/stics/V11.0.0/example/aiadan4_tec.xml @@ -0,0 +1,370 @@ + + + + + + + + + + + + + + + 70 + 1 + 2.33 + 42.00 + 80.00 + 0.00 + 0.00 + + + + + + + + + + + + + 70 + 0.00 + 20.00 + + + + + 77 + 4.00000 + 200.00000 + 2 + + + + + + + + 1.00000 + + + 90.00000 + + + 0.00000 + + + + + + + + + + + + + 365 + straw+roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/alfalfa.obs b/inst/stics/V11.0.0/example/alfalfa.obs new file mode 100644 index 0000000..14fbb4b --- /dev/null +++ b/inst/stics/V11.0.0/example/alfalfa.obs @@ -0,0 +1,14 @@ +ian;mo;jo;jul;lai(n);masec(n) +1983; 6; 9; 160; 1; 0.54 +1983; 6; 17; 168; 2.96; 2.03 +1983; 6; 24; 175; 4.02; 3.31 +1983; 6; 28; 179; 4.09; 3.78 +1983; 7; 2; 183; 4.45; 4.34 +1983; 7; 6; 187; 4.86; 5.05 +1983; 7; 20; 201; 0.65; 0.32 +1983; 7; 23; 204; 1.13; 0.65 +1983; 7; 26; 207; 1.7; 0.98 +1983; 7; 30; 211; -999.99; 1.23 +1983; 8; 4; 216; 2.96; 1.88 +1983; 8; 11; 223; 2.60; 1.87 +1983; 10; 6; 279; -999.99; 2.65 diff --git a/inst/stics/V11.0.0/example/alfalfa_ini.xml b/inst/stics/V11.0.0/example/alfalfa_ini.xml new file mode 100644 index 0000000..77f2426 --- /dev/null +++ b/inst/stics/V11.0.0/example/alfalfa_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + lev + 0.1000 + 0.0000 + 90.0000 + + + 0.0000 + 0.0000 + 0.0000 + 0.0000 + 0.0000 + + + + + + + + + + + + + + + + + + + 0.0000 + 0.0000 + 0.0000 + 0.0000 + 0.0000 + + + 32.0000 + 12.0000 + 9.0000 + 0.0000 + 0.0000 + + + 0.0000 + 0.0000 + 0.0000 + 0.0000 + 0.0000 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/alfalfa_sta.xml b/inst/stics/V11.0.0/example/alfalfa_sta.xml new file mode 100644 index 0000000..b7a8690 --- /dev/null +++ b/inst/stics/V11.0.0/example/alfalfa_sta.xml @@ -0,0 +1,86 @@ + + + + 2.50000 + 0.00000 + 0.02 + 46.40000 + 1000.00000 + 20.00000 + + + + + + + + 50.00000 + 0.23000 + 0.18000 + 0.62000 + 1.00000 + + + + + 0.70000 + 6.00000 + 0.50000 + 0.16000 + 0.00400 + 0.59000 + + + + + + diff --git a/inst/stics/V11.0.0/example/alfalfa_tec.xml b/inst/stics/V11.0.0/example/alfalfa_tec.xml new file mode 100644 index 0000000..f7db2ba --- /dev/null +++ b/inst/stics/V11.0.0/example/alfalfa_tec.xml @@ -0,0 +1,436 @@ + + + + + + + + + + + + + + + 2 + 1 + 1.00 + 42.00 + 20.00 + 0.00 + 0.00 + + + + + + + + + + + + + 2 + 0.00 + 10.00 + + + + + 32 + 2.00000 + 500.00000 + 1 + + + + + + + + 1.00000 + + + 120.00000 + + + 0.02000 + + + + + + + + + + + + + 730 + straw+roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/banana.obs b/inst/stics/V11.0.0/example/banana.obs new file mode 100644 index 0000000..9a3326d --- /dev/null +++ b/inst/stics/V11.0.0/example/banana.obs @@ -0,0 +1,38 @@ +ian;mo;jo;jul;lai(n);HR(1);HR(2);HR(3);HR(4);HR(5);resmes;zrac +1996; 3; 6; 66; 0.08; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 3; 13; 73; 0.108; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 3; 18; 78; -999.99; 38.0; 41.0; 43.0; 47.0; 46.0; 237.0; -999.99 +1996; 3; 20; 80; 0.144; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 3; 25; 85; -999.99; 40.0; 36.0; 38.0; 42.0; 44.0; 221.0; -999.99 +1996; 3; 27; 87; 0.197; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 4; 1; 92; -999.99; 42.0; 43.0; 45.0; 46.0; 47.0; 244.0; -999.99 +1996; 4; 3; 94; 0.252; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 4; 9; 100; -999.99; 43.0; 40.0; 42.0; 44.0; 45.0; 233.5; -999.99 +1996; 4; 10; 101; 0.327; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 4; 15; 106; -999.99; 44.0; 47.0; 46.0; 45.0; 45.0; 249.0; -999.99 +1996; 4; 17; 108; 0.435; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 4; 22; 113; -999.99; 45.0; 44.0; 44.0; 43.0; 46.0; 243.5; -999.99 +1996; 4; 24; 115; 0.563; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 4; 29; 120; -999.99; 45.0; 46.0; 46.0; 44.0; 45.0; 248.5; -999.99 +1996; 4; 30; 121; 0.699; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 5; 6; 127; -999.99; 43.0; 42.0; 41.0; 42.0; 46.0; 233.5; -999.99 +1996; 5; 7; 128; 0.842; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 5; 14; 135; 1.036; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 5; 17; 138; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 60.0 +1996; 5; 20; 141; -999.99; 39.0; 41.0; 41.0; 41.0; 44.0; 223.5; -999.99 +1996; 5; 21; 142; 1.271; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 5; 27; 148; -999.99; 38.0; 40.0; 40.0; 41.0; 44.0; 221.0; -999.99 +1996; 5; 28; 149; 1.523; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 6; 3; 155; -999.99; 41.0; 40.0; 38.0; 44.0; 43.0; 225.5; -999.99 +1996; 6; 4; 156; 1.682; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 6; 10; 162; -999.99; 43.0; 44.0; 47.0; 46.0; 48.0; 227.5; -999.99 +1996; 6; 11; 163; 1.955; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 6; 17; 169; -999.99; 42.0; 44.0; 45.0; 44.0; 48.0; 243.0; -999.99 +1996; 6; 18; 170; 2.213; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 6; 25; 177; 2.457; 34.0; 37.0; 41.0; 44.0; 46.0; 221.0; -999.99 +1996; 7; 2; 184; 2.836; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 7; 9; 191; 2.973; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 7; 16; 198; 3.136; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 7; 23; 205; 3.239; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 7; 30; 212; 3.239; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 8; 6; 219; 3.239; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 diff --git a/inst/stics/V11.0.0/example/banane_ini.xml b/inst/stics/V11.0.0/example/banane_ini.xml new file mode 100644 index 0000000..28ee67b --- /dev/null +++ b/inst/stics/V11.0.0/example/banane_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + snu + 0.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + + + + + + + + + + + + + + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + 50.0 + 50.0 + 0.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/banane_tec.xml b/inst/stics/V11.0.0/example/banane_tec.xml new file mode 100644 index 0000000..b5ddaab --- /dev/null +++ b/inst/stics/V11.0.0/example/banane_tec.xml @@ -0,0 +1,430 @@ + + + + + + + + + + + + + + + 30 + 1 + 4.00 + 42.00 + 40.00 + 0.00 + 0.00 + + + + + + + + + + + + + 30 + 0.00 + 20.00 + + + + + 32 + 20.00000 + 0.18000 + 1 + + + + + + + + 0.80000 + + + 55.00000 + + + 0.00000 + + + + + + + + + + 32 + 30.00 + 1 + + + 47 + 30.00 + 1 + + + 62 + 30.00 + 1 + + + 77 + 30.00 + 1 + + + 92 + 30.00 + 1 + + + 107 + 30.00 + 1 + + + 122 + 30.00 + 1 + + + 152 + 30.00 + 1 + + + 182 + 30.00 + 1 + + + 212 + 30.00 + 1 + + + 242 + 30.00 + 1 + + + 272 + 30.00 + 1 + + + + + + 365 + roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/barley.obs b/inst/stics/V11.0.0/example/barley.obs new file mode 100644 index 0000000..3791c3e --- /dev/null +++ b/inst/stics/V11.0.0/example/barley.obs @@ -0,0 +1,9 @@ +ian;mo;jo;jul;masec(n);mafruit;HR(1);HR(2);HR(3);HR(4);resmes;AZnit(1);AZnit(2);AZnit(3);AZnit(4);Qles;QNplante;azomes;AZamm(1);AZamm(2);AZamm(3);AZamm(4);CNgrain;drat +2001; 10; 19; 292; -999.99; -999.99; 21.4; 22.1; 22; 19.6; 294.75; 14.9; 5.4; 3.6; 3.2; -999.99; -999.99; 23.9; 9.5; 2.7; 0.9; 0.9; -999.99; -999.99 +2001; 11; 14; 318; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 1.851; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 38.0269 +2002; 1; 16; 16; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 5.2276; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99;102.2968 +2002; 2; 13; 44; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 6.2637; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99;120.9574 +2002; 3; 13; 72; -999.99; -999.99; 22.8; 22.5; 23.2; 18.6; 308.25; 16.7; 13.5; 9; 9; -999.99; -999.99; 39.2; 3.2; 2.3; 1.8; 1.4; -999.99; -999.99 +2002; 3; 20; 79; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 10.1277; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99;175.3041 +2002; 7; 25; 206; 11.92; 6.41; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 142.2; -999.99; -999.99; -999.99; -999.99; -999.99; 1.761; -999.99 +2002; 8; 12; 224; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 10.6186; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99;181.2248 diff --git a/inst/stics/V11.0.0/example/barley_ini.xml b/inst/stics/V11.0.0/example/barley_ini.xml new file mode 100644 index 0000000..092d3d3 --- /dev/null +++ b/inst/stics/V11.0.0/example/barley_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + snu + 0 + 0 + 0 + + + 0 + 0 + 0 + 0 + 0 + + + + + + + + + + + + + + + + + + + 21.4 + 22.1 + 22 + 19.6 + 0 + + + 14.9 + 5.4 + 3.6 + 3.2 + 0 + + + 9.5 + 2.7 + 0.9 + 0.9 + 0 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/barley_sta.xml b/inst/stics/V11.0.0/example/barley_sta.xml new file mode 100644 index 0000000..5fece47 --- /dev/null +++ b/inst/stics/V11.0.0/example/barley_sta.xml @@ -0,0 +1,86 @@ + + + + 2.50000 + 0.00000 + 0.02 + 48.19000 + 1000.00000 + 20.00000 + + + + + + + + 50.00000 + 0.23000 + 0.18000 + 0.62000 + 1.00000 + + + + + 0.70000 + 6.00000 + 0.50000 + 0.16000 + 0.00400 + 0.59000 + + + + + + diff --git a/inst/stics/V11.0.0/example/barley_tec.xml b/inst/stics/V11.0.0/example/barley_tec.xml new file mode 100644 index 0000000..18585ef --- /dev/null +++ b/inst/stics/V11.0.0/example/barley_tec.xml @@ -0,0 +1,366 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + 436 + 2.00000 + 400.00000 + 1 + + + + + + + + 1.00000 + + + 90.00000 + + + 0.00000 + + + + + + + + + + 449 + 60.00 + 1 + + + 480 + 60.00 + 1 + + + + + + 999 + straw+roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/bettera_ini.xml b/inst/stics/V11.0.0/example/bettera_ini.xml new file mode 100644 index 0000000..9a6e25b --- /dev/null +++ b/inst/stics/V11.0.0/example/bettera_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + snu + 0.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + + + + + + + + + + + + + + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + 15.0 + 11.0 + 10.0 + 20.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/bettera_tec.xml b/inst/stics/V11.0.0/example/bettera_tec.xml new file mode 100644 index 0000000..599e6d9 --- /dev/null +++ b/inst/stics/V11.0.0/example/bettera_tec.xml @@ -0,0 +1,395 @@ + + + + + + + + + + + + + + + 2 + 1 + 8.00 + 42.00 + 80.00 + 0.00 + 0.00 + + + + + + + + + + + + + 2 + 0.00 + 26.00 + + + + + 108 + 3.00000 + 11.00000 + 1 + + + + + + + + 0.80000 + + + 180.00000 + + + 0.02000 + + + + + + + + + + 102 + 170.00 + 8 + + + + + + 999 + straw+roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/ble.lai b/inst/stics/V11.0.0/example/ble.lai new file mode 100644 index 0000000..2017395 --- /dev/null +++ b/inst/stics/V11.0.0/example/ble.lai @@ -0,0 +1,264 @@ +1 10.9710 +1 .0050 +1 1521.9300 +0 .0020 +0 2500.0000 + .1 12 1.4 + 1 293 .000 12.0 + 2 294 .000 23.8 + 3 295 .000 37.9 + 4 296 .000 50.5 + 5 297 .000 62.0 + 6 298 .000 73.3 + 7 299 .000 82.9 + 8 300 .000 91.8 + 9 301 .000 99.8 + 10 302 .000 109.9 + 11 303 .000 123.3 + 12 304 .000 138.1 + 13 305 .000 149.8 + 14 306 .000 158.7 + 15 307 .000 172.3 + 16 308 .000 187.9 + 17 309 .000 202.9 + 18 310 .000 212.6 + 19 311 .000 221.6 + 20 312 .000 232.8 + 21 313 .000 243.1 + 22 314 .000 254.5 + 23 315 .000 265.2 + 24 316 .000 274.5 + 25 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417 .236 1010.5 +126 418 .248 1015.2 +127 419 .263 1020.7 +128 420 .283 1027.9 +129 421 .308 1036.5 +130 422 .321 1041.1 +131 423 .331 1044.4 +132 424 .361 1054.1 +133 425 .390 1062.8 +134 426 .410 1068.9 +135 427 .427 1073.7 +136 428 .440 1077.4 +137 429 .456 1081.8 +138 430 .476 1087.1 +139 431 .492 1091.5 +140 432 .513 1097.0 +141 433 .533 1101.9 +142 434 .563 1109.4 +143 435 .607 1119.8 +144 436 .653 1130.1 +145 437 .696 1139.5 +146 438 .712 1142.8 +147 439 .746 1149.8 +148 440 .774 1155.3 +149 441 .828 1166.0 +150 442 .876 1174.8 +151 443 .917 1182.3 +152 444 .940 1186.4 +153 445 .967 1191.1 +154 446 .998 1196.4 +155 447 1.051 1205.2 +156 448 1.112 1215.1 +157 449 1.166 1223.4 +158 450 1.240 1234.7 +159 451 1.284 1241.1 +160 452 1.310 1244.7 +161 453 1.346 1249.9 +162 454 1.379 1254.5 +163 455 1.426 1260.9 +164 456 1.502 1271.2 +165 457 1.609 1285.0 +166 458 1.718 1298.5 +167 459 1.808 1309.3 +168 460 1.907 1320.9 +169 461 1.991 1330.5 +170 462 2.116 1344.4 +171 463 2.198 1353.3 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b/inst/stics/V11.0.0/example/ble1_tec.xml new file mode 100644 index 0000000..e889de5 --- /dev/null +++ b/inst/stics/V11.0.0/example/ble1_tec.xml @@ -0,0 +1,380 @@ + + + + + + + + + + + + + + + 300 + 1 + 4.00 + 42.00 + 45.00 + 0.00 + 0.00 + + + + + + + + + + + + + 300 + 0.00 + 25.00 + + + + + 298 + 4.00000 + 250.00000 + 1 + + + + + + + + 1.00000 + + + 100.00000 + + + 0.02000 + + + + + + + + + + 413 + 50.00 + 2 + + + 460 + 100.00 + 2 + + + + + + 660 + straw+roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/ble4_tec.xml b/inst/stics/V11.0.0/example/ble4_tec.xml new file mode 100644 index 0000000..e889de5 --- /dev/null +++ b/inst/stics/V11.0.0/example/ble4_tec.xml @@ -0,0 +1,380 @@ + + + + + + + + + + + + + + + 300 + 1 + 4.00 + 42.00 + 45.00 + 0.00 + 0.00 + + + + + + + + + + + + + 300 + 0.00 + 25.00 + + + + + 298 + 4.00000 + 250.00000 + 1 + + + + + + + + 1.00000 + + + 100.00000 + + + 0.02000 + + + + + + + + + + 413 + 50.00 + 2 + + + 460 + 100.00 + 2 + + + + + + 660 + straw+roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/ble4ans_ini.xml b/inst/stics/V11.0.0/example/ble4ans_ini.xml new file mode 100644 index 0000000..4be35c6 --- /dev/null +++ b/inst/stics/V11.0.0/example/ble4ans_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + snu + 0.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + + + + + + + + + + + + + + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/ble_ini.xml b/inst/stics/V11.0.0/example/ble_ini.xml new file mode 100644 index 0000000..766cdfb --- /dev/null +++ b/inst/stics/V11.0.0/example/ble_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + snu + 0.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + + + + + + + + + + + + + + + + 3.0 + 5.0 + 12.0 + 12.0 + 12.0 + + + 3.1 + 2.9 + 4.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/bledur.lai b/inst/stics/V11.0.0/example/bledur.lai new file mode 100644 index 0000000..2de08dc --- /dev/null +++ b/inst/stics/V11.0.0/example/bledur.lai @@ -0,0 +1,218 @@ + +0 6.2000 +1 .0032 +0 1200.0000 +1 .0024 +0 2400.0000 + .0 2 .0 + 1 310 .116 8.2 + 2 311 .121 21.4 + 3 312 .126 33.0 + 4 313 .130 42.7 + 5 314 .134 52.7 + 6 315 .138 61.8 + 7 316 .141 69.3 + 8 317 .147 81.0 + 9 318 .155 97.9 + 10 319 .161 109.7 + 11 320 .164 116.5 + 12 321 .168 123.9 + 13 322 .174 134.2 + 14 323 .179 143.1 + 15 324 .181 147.6 + 16 325 .186 156.2 + 17 326 .191 164.0 + 18 327 .198 175.0 + 19 328 .206 187.2 + 20 329 .212 197.0 + 21 330 .218 205.2 + 22 331 .225 215.1 + 23 332 .231 224.2 + 24 333 .239 234.2 + 25 334 .247 245.9 + 26 335 .257 258.6 + 27 336 .269 272.5 + 28 337 .280 285.9 + 29 338 .290 297.3 + 30 339 .297 304.7 + 31 340 .305 313.0 + 32 341 .318 326.6 + 33 342 .334 342.3 + 34 343 .351 358.7 + 35 344 .364 370.7 + 36 345 .373 378.5 + 37 346 .379 383.8 + 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+ + + + + + + + + + + + + + + + + 15.0 + 16.0 + 15.0 + 16.0 + 0.0 + + + 3.0 + 3.0 + 4.0 + 1.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/bledur_tec.xml b/inst/stics/V11.0.0/example/bledur_tec.xml new file mode 100644 index 0000000..486babe --- /dev/null +++ b/inst/stics/V11.0.0/example/bledur_tec.xml @@ -0,0 +1,390 @@ + + + + + + + + + + + + + + + 343 + 1 + 1.00 + 42.00 + 15.00 + 0.00 + 0.00 + + + + + + + + + + + + + 343 + 15.00 + 22.00 + + + + + 300 + 3.00000 + 268.00000 + 1 + + + + + + + + 1.00000 + + + 120.00000 + + + 0.00000 + + + + + + + + + + 397 + 20.00 + 2 + + + 423 + 86.00 + 2 + + + 459 + 55.00 + 2 + + + 476 + 35.00 + 2 + + + + + + 700 + straw+roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/canne_ini.xml b/inst/stics/V11.0.0/example/canne_ini.xml new file mode 100644 index 0000000..93d89d0 --- /dev/null +++ b/inst/stics/V11.0.0/example/canne_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + lev + 0.0 + 0.0 + 40.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + + + + + + + + + + + + + + + + 36.5 + 36.9 + 38.8 + 37.8 + 0.0 + + + 30.0 + 20.0 + 0.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/canne_tec.xml b/inst/stics/V11.0.0/example/canne_tec.xml new file mode 100644 index 0000000..e01ee30 --- /dev/null +++ b/inst/stics/V11.0.0/example/canne_tec.xml @@ -0,0 +1,375 @@ + + + + + + + + + + + + + + + 0 + 9 + 13.00 + 43.00 + 60.00 + 0.00 + 25.00 + + + + + + + + + + + + + 0 + 15.00 + 22.00 + + + + + 286 + 5.00000 + 8.00000 + 3 + + + + + + + + 1.00000 + + + 80.00000 + + + 0.00000 + + + + + + + + + + 292 + 225.00 + 1 + + + + + + 651 + roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/cc_BristleOat.obs b/inst/stics/V11.0.0/example/cc_BristleOat.obs new file mode 100644 index 0000000..7196ad5 --- /dev/null +++ b/inst/stics/V11.0.0/example/cc_BristleOat.obs @@ -0,0 +1,6 @@ +ian;mo;jo;jul;masec(n);QNplante;resmes;azomes;ilevs +2013;10;21;294;1.000566918;23.67250276;-999.99;-999.99;-999.99 +2013;11;3;307;-999.99;-999.99;252.3409033;8.894889413;-999.99 +2013;12;2;336;1.764383698;33.16470066;-999.99;-999.99;-999.99 +2014;1;29;29;1.851963793;38.93154947;-999.99;-999.99;-999.99 +2014;2;7;38;-999.99;-999.99;371.9633539;8.742595434;241 diff --git a/inst/stics/V11.0.0/example/cc_BristleOat_ini.xml b/inst/stics/V11.0.0/example/cc_BristleOat_ini.xml new file mode 100644 index 0000000..3315ec1 --- /dev/null +++ b/inst/stics/V11.0.0/example/cc_BristleOat_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + snu + 0.0000 + 0.0000 + 0.0000 + + + 0.0000 + 0.0000 + 0.0000 + 0.0000 + 0.0000 + + + + + + + + + + + + + + + + + + + 12.4186606970716 + 14.3406696514642 + 11 + 11.9 + 14.7 + + + 7.5 + 15.1 + 10.9 + 4.2 + 2.6 + + + 0.3 + 0.6 + 0.3 + 1.1 + 1.1 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/cc_BristleOat_tec.xml b/inst/stics/V11.0.0/example/cc_BristleOat_tec.xml new file mode 100644 index 0000000..96c59e8 --- /dev/null +++ b/inst/stics/V11.0.0/example/cc_BristleOat_tec.xml @@ -0,0 +1,383 @@ + + + + + + + + + + + + + + + 234 + 1 + 6 + 42 + 75 + 0 + 0 + + + + + + + + + + + + + 234 + 0 + 15 + + + 403 + 0 + 10 + + + + + 234 + 3 + 217 + 1 + + + + + + + + 1.00000 + + + 120 + + + 0.02000 + + + + + + + + + + + + + 326 + whole_crop + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/cc_CrimsonClover.obs b/inst/stics/V11.0.0/example/cc_CrimsonClover.obs new file mode 100644 index 0000000..d9f5ff1 --- /dev/null +++ b/inst/stics/V11.0.0/example/cc_CrimsonClover.obs @@ -0,0 +1,7 @@ +ian;mo;jo;jul;masec(n);QNplante;Qfix;resmes;azomes;ilevs +2013;10;21;294;1.677592484;52.31110577;35.35167125;-999.99;-999.99;-999.99 +2013;11;3;307;-999.99;-999.99;-999.99;272.9512918;28.59203252;-999.99 +2013;12;2;336;3.562172302;102.5103502;78.84143218;-999.99;-999.99;-999.99 +2013;12;4;338;-999.99;-999.99;-999.99;347.9838029;19.95462092;-999.99 +2014;1;29;29;3.746399695;115.1081609;94.72058998;-999.99;-999.99;-999.99 +2014;2;7;38;-999.99;-999.99;-999.99;372.6872961;10.56482595;240 diff --git a/inst/stics/V11.0.0/example/cc_CrimsonClover_ini.xml b/inst/stics/V11.0.0/example/cc_CrimsonClover_ini.xml new file mode 100644 index 0000000..3315ec1 --- /dev/null +++ b/inst/stics/V11.0.0/example/cc_CrimsonClover_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + snu + 0.0000 + 0.0000 + 0.0000 + + + 0.0000 + 0.0000 + 0.0000 + 0.0000 + 0.0000 + + + + + + + + + + + + + + + + + + + 12.4186606970716 + 14.3406696514642 + 11 + 11.9 + 14.7 + + + 7.5 + 15.1 + 10.9 + 4.2 + 2.6 + + + 0.3 + 0.6 + 0.3 + 1.1 + 1.1 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/cc_CrimsonClover_tec.xml b/inst/stics/V11.0.0/example/cc_CrimsonClover_tec.xml new file mode 100644 index 0000000..94667ff --- /dev/null +++ b/inst/stics/V11.0.0/example/cc_CrimsonClover_tec.xml @@ -0,0 +1,369 @@ + + + + + + + + + + + + + + + + + + + + + + + + + 404 + 5 + 7 + + + + + 234 + 3 + 191 + 1 + + + + + + + + 1.00000 + + + 120 + + + 0.02000 + + + + + + + + + + + + + 404 + whole_crop + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/cc_ItalianRyegrass.obs b/inst/stics/V11.0.0/example/cc_ItalianRyegrass.obs new file mode 100644 index 0000000..cc19b96 --- /dev/null +++ b/inst/stics/V11.0.0/example/cc_ItalianRyegrass.obs @@ -0,0 +1,5 @@ +ian;mo;jo;jul;masec(n);QNplante;resmes;azomes;ilevs +2012;10;26;300;1.35182936;30.51254329;-999.99;-999.99;-999.99 +2012;11;7;312;-999.99;-999.99;299.3023317;30.92037174;-999.99 +2013;1;30;30;3.42167261;58.6152181;-999.99;-999.99;-999.99 +2013;2;7;38;-999.99;-999.99;373.8306946;6.634246835;236 diff --git a/inst/stics/V11.0.0/example/cc_ItalianRyegrass_ini.xml b/inst/stics/V11.0.0/example/cc_ItalianRyegrass_ini.xml new file mode 100644 index 0000000..7843242 --- /dev/null +++ b/inst/stics/V11.0.0/example/cc_ItalianRyegrass_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + snu + 0.0000 + 0.0000 + 0.0000 + + + 0.0000 + 0.0000 + 0.0000 + 0.0000 + 0.0000 + + + + + + + + + + + + + + + + + + + 11.8371338316273 + 13.5814330841864 + 12 + 16 + 18.5 + + + 4.9 + 9.9 + 17.2 + 9.5 + 2.2 + + + 1.6 + 2.8 + 4.4 + 3.2 + 14 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/cc_ItalianRyegrass_tec.xml b/inst/stics/V11.0.0/example/cc_ItalianRyegrass_tec.xml new file mode 100644 index 0000000..db725b9 --- /dev/null +++ b/inst/stics/V11.0.0/example/cc_ItalianRyegrass_tec.xml @@ -0,0 +1,387 @@ + + + + + + + + + + + + + + + 229 + 1 + 4 + 42 + 45 + 0 + 0 + + + + + + + + + + + + + 229 + 0 + 15 + + + 404 + 0 + 10 + + + + + 229 + 3 + 477 + 1 + + + + + + + + 1.00000 + + + 120 + + + 0.02000 + + + + + + + + + + + + + 399 + whole_crop + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/cc_mustard.obs b/inst/stics/V11.0.0/example/cc_mustard.obs new file mode 100644 index 0000000..d811ad2 --- /dev/null +++ b/inst/stics/V11.0.0/example/cc_mustard.obs @@ -0,0 +1,6 @@ +ian;mo;jo;jul;masec(n);QNplante;resmes;azomes;ilevs +2013;10;21;294;1.452958235;21.86029505;-999.99;-999.99;-999.99 +2013;11;3;307;-999.99;-999.99;242.0101366;3.441573233;-999.99 +2013;12;2;336;2.481756935;52.46208645;-999.99;-999.99;-999.99 +2013;12;4;338;-999.99;-999.99;329.9265491;8.115296192;-999.99 +2014;2;7;38;-999.99;-999.99;362.4409644;8.483129058;240 diff --git a/inst/stics/V11.0.0/example/cc_mustard_ini.xml b/inst/stics/V11.0.0/example/cc_mustard_ini.xml new file mode 100644 index 0000000..3315ec1 --- /dev/null +++ b/inst/stics/V11.0.0/example/cc_mustard_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + snu + 0.0000 + 0.0000 + 0.0000 + + + 0.0000 + 0.0000 + 0.0000 + 0.0000 + 0.0000 + + + + + + + + + + + + + + + + + + + 12.4186606970716 + 14.3406696514642 + 11 + 11.9 + 14.7 + + + 7.5 + 15.1 + 10.9 + 4.2 + 2.6 + + + 0.3 + 0.6 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225 21.0 27.5 21.3 4.5 0.1 1.5 -999.9 330.0 +fourque 1988 8 13 226 19.1 32.3 22.4 4.9 0.1 1.0 -999.9 330.0 +fourque 1988 8 14 227 18.2 29.9 22.8 4.7 0.2 1.3 -999.9 330.0 +fourque 1988 8 15 228 17.5 34.5 22.7 5.1 0.0 1.2 -999.9 330.0 +fourque 1988 8 16 229 18.5 32.5 20.4 4.6 1.0 1.6 -999.9 330.0 +fourque 1988 8 17 230 19.5 32.8 23.6 5.7 0.0 2.1 -999.9 330.0 +fourque 1988 8 18 231 19.5 32.9 23.8 5.5 0.0 1.3 -999.9 330.0 +fourque 1988 8 19 232 19.0 30.7 21.9 4.7 0.2 1.3 -999.9 330.0 +fourque 1988 8 20 233 22.0 25.2 9.2 2.2 0.0 1.6 -999.9 330.0 +fourque 1988 8 21 234 13.8 25.5 18.5 4.6 0.0 2.7 -999.9 330.0 +fourque 1988 8 22 235 15.4 24.2 22.5 3.8 0.0 4.3 -999.9 330.0 +fourque 1988 8 23 236 14.9 25.5 24.2 4.9 0.0 2.6 -999.9 330.0 +fourque 1988 8 24 237 11.3 25.5 18.7 3.6 0.0 1.4 -999.9 330.0 +fourque 1988 8 25 238 14.5 25.5 21.8 4.8 0.0 3.4 -999.9 330.0 +fourque 1988 8 26 239 13.2 27.2 23.5 5.4 0.0 2.7 -999.9 330.0 +fourque 1988 8 27 240 17.5 30.6 23.0 5.0 0.0 1.4 -999.9 330.0 +fourque 1988 8 28 241 15.8 25.5 10.9 2.6 16.0 2.3 -999.9 330.0 +fourque 1988 8 29 242 19.0 27.2 14.9 3.6 0.0 2.4 -999.9 330.0 +fourque 1988 8 30 243 14.1 25.9 23.0 4.6 0.0 1.6 -999.9 330.0 +fourque 1988 8 31 244 10.4 26.7 18.3 3.2 0.0 1.0 -999.9 330.0 +fourque 1988 9 1 245 15.5 25.2 11.0 2.5 0.8 3.2 -999.9 330.0 +fourque 1988 9 2 246 15.5 24.5 19.8 4.4 0.0 2.7 -999.9 330.0 +fourque 1988 9 3 247 11.2 23.7 21.7 3.7 0.1 1.7 -999.9 330.0 +fourque 1988 9 4 248 13.6 30.2 21.2 4.1 0.2 1.0 -999.9 330.0 +fourque 1988 9 5 249 16.8 28.2 20.4 4.1 0.1 1.9 -999.9 330.0 +fourque 1988 9 6 250 17.0 32.4 21.4 4.4 0.0 4.1 -999.9 330.0 +fourque 1988 9 7 251 21.0 31.0 20.7 4.9 0.0 1.6 -999.9 330.0 +fourque 1988 9 8 252 16.2 31.0 19.5 4.2 0.0 1.5 -999.9 330.0 +fourque 1988 9 9 253 17.2 31.0 6.0 2.4 0.1 0.8 -999.9 330.0 +fourque 1988 9 10 254 14.7 25.0 15.8 2.7 0.0 0.9 -999.9 330.0 +fourque 1988 9 11 255 16.8 26.4 18.0 3.4 0.1 1.1 -999.9 330.0 +fourque 1988 9 12 256 17.0 27.3 15.2 3.4 0.0 2.0 -999.9 330.0 +fourque 1988 9 13 257 14.9 22.7 16.7 3.7 0.0 2.6 -999.9 330.0 +fourque 1988 9 14 258 9.4 20.2 19.4 3.9 0.0 4.0 -999.9 330.0 +fourque 1988 9 15 259 10.4 20.3 19.0 3.9 0.0 5.0 -999.9 330.0 +fourque 1988 9 16 260 12.2 19.8 18.9 4.9 0.0 5.9 -999.9 330.0 +fourque 1988 9 17 261 12.6 22.0 18.7 5.1 0.0 5.7 -999.9 330.0 +fourque 1988 9 18 262 13.5 22.4 18.6 4.7 0.0 4.6 -999.9 330.0 +fourque 1988 9 19 263 12.0 24.5 16.5 3.1 0.0 1.3 -999.9 330.0 +fourque 1988 9 20 264 10.6 25.0 16.8 2.8 0.0 1.1 -999.9 330.0 +fourque 1988 9 21 265 8.7 23.8 17.3 2.7 0.1 1.1 -999.9 330.0 +fourque 1988 9 22 266 9.9 24.8 15.5 2.4 0.1 1.0 -999.9 330.0 +fourque 1988 9 23 267 13.7 25.0 14.6 2.7 0.0 1.7 -999.9 330.0 +fourque 1988 9 24 268 14.1 26.4 17.3 3.6 0.0 2.4 -999.9 330.0 +fourque 1988 9 25 269 14.0 27.5 17.9 3.7 0.0 2.1 -999.9 330.0 +fourque 1988 9 26 270 13.5 27.0 16.9 3.0 0.0 1.0 -999.9 330.0 +fourque 1988 9 27 271 9.9 28.2 16.7 2.7 0.0 1.1 -999.9 330.0 +fourque 1988 9 28 272 9.4 23.2 15.4 2.3 0.0 1.6 -999.9 330.0 +fourque 1988 9 29 273 15.3 22.7 6.9 2.3 31.0 2.9 -999.9 330.0 +fourque 1988 9 30 274 10.9 16.2 5.5 1.4 0.0 2.9 -999.9 330.0 +fourque 1988 10 1 275 11.0 16.0 7.3 1.0 28.0 2.5 -999.9 330.0 +fourque 1988 10 2 276 12.0 20.1 5.1 1.2 2.2 1.7 -999.9 330.0 +fourque 1988 10 3 277 14.0 21.5 3.2 0.9 2.0 1.5 -999.9 330.0 +fourque 1988 10 4 278 15.8 23.0 8.2 1.9 0.1 1.9 -999.9 330.0 +fourque 1988 10 5 279 17.2 21.5 6.2 1.3 0.0 2.2 -999.9 330.0 +fourque 1988 10 6 280 10.7 21.2 15.2 2.5 0.0 1.7 -999.9 330.0 +fourque 1988 10 7 281 13.4 22.3 9.6 2.2 0.0 3.1 -999.9 330.0 +fourque 1988 10 8 282 10.0 18.7 5.7 1.8 0.0 1.5 -999.9 330.0 +fourque 1988 10 9 283 7.6 20.7 4.6 2.3 0.6 3.6 -999.9 330.0 +fourque 1988 10 10 284 8.5 22.0 4.0 0.0 0.0 2.6 -999.9 330.0 +fourque 1988 10 11 285 8.4 22.5 7.0 0.8 6.6 4.0 -999.9 330.0 +fourque 1988 10 12 286 13.5 20.5 7.6 1.6 0.3 1.0 -999.9 330.0 +fourque 1988 10 13 287 11.2 19.7 6.0 0.4 36.0 1.3 -999.9 330.0 +fourque 1988 10 14 288 13.3 21.5 12.6 1.6 41.0 3.4 -999.9 330.0 +fourque 1988 10 15 289 16.0 23.9 9.6 1.9 0.1 2.2 -999.9 330.0 +fourque 1988 10 16 290 16.7 24.0 8.4 1.9 0.0 1.7 -999.9 330.0 +fourque 1988 10 17 291 16.0 24.1 4.5 1.7 0.0 3.8 -999.9 330.0 +fourque 1988 10 18 292 17.3 24.0 3.9 2.0 1.8 2.5 -999.9 330.0 +fourque 1988 10 19 293 17.9 20.0 3.6 0.9 15.5 3.0 -999.9 330.0 +fourque 1988 10 20 294 9.2 19.1 13.5 2.1 0.0 2.2 -999.9 330.0 +fourque 1988 10 21 295 7.2 18.0 13.4 1.8 0.0 2.5 -999.9 330.0 +fourque 1988 10 22 296 6.8 20.4 13.1 1.3 0.0 1.0 -999.9 330.0 +fourque 1988 10 23 297 8.5 18.3 8.1 1.1 0.3 0.8 -999.9 330.0 +fourque 1988 10 24 298 8.7 22.0 11.6 1.6 0.0 2.8 -999.9 330.0 +fourque 1988 10 25 299 11.5 20.3 11.7 1.3 0.1 1.1 -999.9 330.0 +fourque 1988 10 26 300 7.9 19.7 7.5 1.1 0.1 1.4 -999.9 330.0 +fourque 1988 10 27 301 10.4 20.1 5.5 1.2 0.0 1.9 -999.9 330.0 +fourque 1988 10 28 302 13.2 21.4 9.9 1.5 0.1 1.4 -999.9 330.0 +fourque 1988 10 29 303 12.4 22.0 9.5 1.5 0.0 2.5 -999.9 330.0 +fourque 1988 10 30 304 13.7 18.8 11.2 2.4 0.0 4.5 -999.9 330.0 +fourque 1988 10 31 305 7.6 14.1 11.6 1.8 0.0 3.5 -999.9 330.0 +fourque 1988 11 1 306 6.5 14.4 4.2 1.1 0.1 1.1 -999.9 330.0 +fourque 1988 11 2 307 8.4 20.2 9.3 1.0 0.1 2.1 -999.9 330.0 +fourque 1988 11 3 308 8.2 13.6 11.0 1.8 0.0 4.1 -999.9 330.0 +fourque 1988 11 4 309 6.4 15.0 8.4 1.5 0.0 3.0 -999.9 330.0 +fourque 1988 11 5 310 3.2 15.2 9.5 0.6 0.0 0.2 -999.9 330.0 +fourque 1988 11 6 311 7.9 13.0 5.7 0.8 0.0 0.4 -999.9 330.0 +fourque 1988 11 7 312 3.3 14.7 7.2 1.1 0.7 2.0 -999.9 330.0 +fourque 1988 11 8 313 4.6 13.5 1.1 0.0 3.1 3.8 -999.9 330.0 +fourque 1988 11 9 314 10.9 14.5 1.5 0.5 14.0 1.3 -999.9 330.0 +fourque 1988 11 10 315 11.2 15.5 4.2 0.6 0.0 0.9 -999.9 330.0 +fourque 1988 11 11 316 9.9 15.5 5.9 0.6 0.0 0.6 -999.9 330.0 +fourque 1988 11 12 317 8.5 17.0 5.7 0.7 1.4 1.6 -999.9 330.0 +fourque 1988 11 13 318 11.8 18.1 4.8 1.2 0.0 4.1 -999.9 330.0 +fourque 1988 11 14 319 10.3 18.8 7.7 4.4 0.0 8.0 -999.9 330.0 +fourque 1988 11 15 320 7.7 13.8 9.3 0.9 0.0 3.8 -999.9 330.0 +fourque 1988 11 16 321 5.0 12.2 8.5 0.0 0.1 1.7 -999.9 330.0 +fourque 1988 11 17 322 5.5 15.2 7.7 0.5 0.2 0.7 -999.9 330.0 +fourque 1988 11 18 323 6.2 19.0 5.9 1.2 0.0 2.4 -999.9 330.0 +fourque 1988 11 19 324 6.5 16.5 8.6 1.3 0.0 5.1 -999.9 330.0 +fourque 1988 11 20 325 5.6 15.5 8.3 1.6 0.0 2.9 -999.9 330.0 +fourque 1988 11 21 326 5.0 11.8 9.1 1.7 0.0 7.6 -999.9 330.0 +fourque 1988 11 22 327 -1.0 6.5 8.5 1.6 0.0 9.7 -999.9 330.0 +fourque 1988 11 23 328 -2.3 3.5 8.6 0.5 0.0 6.7 -999.9 330.0 +fourque 1988 11 24 329 1.0 5.4 8.4 0.9 0.0 4.9 -999.9 330.0 +fourque 1988 11 25 330 -1.0 6.8 8.0 0.4 0.2 2.4 -999.9 330.0 +fourque 1988 11 26 331 -0.6 8.3 7.2 0.3 0.0 2.3 -999.9 330.0 +fourque 1988 11 27 332 -2.3 8.5 8.1 0.5 0.1 2.7 -999.9 330.0 +fourque 1988 11 28 333 -2.4 9.3 7.2 0.2 0.0 0.9 -999.9 330.0 +fourque 1988 11 29 334 -0.2 10.5 5.0 0.4 0.0 0.8 -999.9 330.0 +fourque 1988 11 30 335 2.4 12.0 2.6 0.4 14.0 0.8 -999.9 330.0 diff --git a/inst/stics/V11.0.0/example/fourquej_sta.xml b/inst/stics/V11.0.0/example/fourquej_sta.xml new file mode 100644 index 0000000..e8512fb --- /dev/null +++ b/inst/stics/V11.0.0/example/fourquej_sta.xml @@ -0,0 +1,86 @@ + + + + 2.50000 + 0.00000 + 0.02 + 43.00000 + 1000.00000 + 20.0000000 + + + + + + + + 50.00000 + 0.23000 + 0.18000 + 0.62000 + 1.00000 + + + + + 0.70000 + 6.00000 + 0.50000 + 0.16000 + 0.00400 + 0.59000 + + + + + + diff --git a/inst/stics/V11.0.0/example/fraise_ini.xml b/inst/stics/V11.0.0/example/fraise_ini.xml new file mode 100644 index 0000000..2817307 --- /dev/null +++ b/inst/stics/V11.0.0/example/fraise_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + dor + 0.2 + 0.0 + 20.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + + + + + + + + + + + + + + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/grass.obs b/inst/stics/V11.0.0/example/grass.obs new file mode 100644 index 0000000..14de444 --- /dev/null +++ b/inst/stics/V11.0.0/example/grass.obs @@ -0,0 +1,11 @@ +ian;mo;jo;jul;lai(n);masec(n) +1995; 2; 9; 40; 2.71; 2.4 +1995; 2; 22; 53; 2.77; 3.42 +1995; 3; 7; 66; 2.95; 3.33 +1995; 3; 16; 75; 2.7; 3.69 +1995; 3; 30; 89; 2.55; 4.49 +1995; 4; 11; 101; 2.96; 4.75 +1995; 4; 24; 114; 3.34; 5.3 +1995; 5; 3; 123; 5.05; 5.96 +1995; 5; 17; 137; 6.56; 6.13 +1995; 5; 31; 151; 5.14; 5.99 diff --git a/inst/stics/V11.0.0/example/lettuce.obs b/inst/stics/V11.0.0/example/lettuce.obs new file mode 100644 index 0000000..2dbfc3a --- /dev/null +++ b/inst/stics/V11.0.0/example/lettuce.obs @@ -0,0 +1,7 @@ +ian;mo;jo;jul;lai(n);masec(n);resmes;drain;et;zrac;tcult +2000; 1; 22; 22; 0.029; 0.007; 173.022; 0.0; 0.041; 8.493; 8.1 +2000; 2; 1; 32; 0.082; 0.021; 172.5; 0.0; 0.051; 11.5; 9.1 +2000; 2; 11; 42; 0.48; 0.15; 172.0; 0.0; 0.75; 18.1; 11 +2000; 2; 21; 52; 0.86; 0.5; 160.1; -999.99; 2.21; 23.8; 8.1 +2000; 3; 2; 62; 0.957; 1.02; 151.2; -999.99; 2.66; 29.0; 9.9 +2000; 3; 12; 72; 0.972; 2.034; 135.7; -999.99; 2.09; 35.9; 13.3 diff --git a/inst/stics/V11.0.0/example/lin_ini.xml b/inst/stics/V11.0.0/example/lin_ini.xml new file mode 100644 index 0000000..69d753f --- /dev/null +++ b/inst/stics/V11.0.0/example/lin_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + plt + 0.0000 + 0.0000 + 0.0000 + + + 0.0000 + 0.0000 + 0.0000 + 0.0000 + 0.0000 + + + + + + + + + + + + + + + + + + + 23.0000 + 22.9000 + 22.2000 + 0.0000 + 0.0000 + + + 2.1000 + 19.6000 + 11.6000 + 0.0000 + 0.0000 + + + 0.0000 + 0.0000 + 0.0000 + 0.0000 + 0.0000 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/lin_tec.xml b/inst/stics/V11.0.0/example/lin_tec.xml new file mode 100644 index 0000000..0861e04 --- /dev/null +++ b/inst/stics/V11.0.0/example/lin_tec.xml @@ -0,0 +1,387 @@ + + + + + + + + + + + + + + + 64 + 1 + 4.20 + 42.00 + 90.00 + 0.00 + 0.00 + + + + + + + + + + + + + 64 + 0.00 + 28.00 + + + + + 64 + 2.00000 + 216.00000 + 1 + + + + + + + + 1.00000 + + + 150.00000 + + + 0.00000 + + + + + + + + + + 107 + 120.00 + 1 + + + + + + 999 + roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/mai5ans_ini.xml b/inst/stics/V11.0.0/example/mai5ans_ini.xml new file mode 100644 index 0000000..4be35c6 --- /dev/null +++ b/inst/stics/V11.0.0/example/mai5ans_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + snu + 0.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + + + + + + + + + + + + + + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/mais.lai b/inst/stics/V11.0.0/example/mais.lai new file mode 100644 index 0000000..cc351b6 --- /dev/null +++ b/inst/stics/V11.0.0/example/mais.lai @@ -0,0 +1,245 @@ + Tf non atteint +1 5.3428 +1 .0105 +1 682.8785 +1 .0024 +1 2434.7810 + .0 6 .0 + 1 122 .000 4.5 + 2 123 .000 9.4 + 3 124 .000 15.3 + 4 125 .000 19.8 + 5 126 .000 25.9 + 6 127 .000 35.2 + 7 128 .000 42.9 + 8 129 .000 54.0 + 9 130 .000 59.1 + 10 131 .000 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1779.8 +153 274 4.177 1792.5 +154 275 4.154 1800.8 +155 276 4.133 1808.2 +156 277 4.115 1814.5 +157 278 4.091 1822.5 +158 279 4.073 1828.6 +159 280 4.058 1833.6 +160 281 4.043 1838.3 +161 282 4.022 1845.2 +162 283 3.992 1854.5 +163 284 3.976 1859.6 +164 285 3.957 1865.6 +165 286 3.934 1872.5 +166 287 3.891 1885.0 +167 288 3.853 1895.9 +168 289 3.821 1904.9 +169 290 3.804 1909.7 +170 291 3.782 1915.5 +171 292 3.762 1921.1 +172 293 3.726 1930.4 +173 294 3.695 1938.6 +174 295 3.648 1950.3 +175 296 3.612 1959.2 +176 297 3.570 1969.5 +177 298 3.526 1979.7 +178 299 3.482 1989.8 +179 300 3.449 1997.2 +180 301 3.413 2005.2 +181 302 3.378 2012.7 +182 303 3.341 2020.5 +183 304 3.327 2023.5 +184 305 3.317 2025.7 +185 306 3.276 2034.0 +186 307 3.239 2041.6 +187 308 3.203 2048.8 +188 309 3.170 2055.2 +189 310 3.140 2060.9 +190 311 3.110 2066.7 +191 312 3.066 2074.9 +192 313 3.039 2079.8 +193 314 3.023 2082.9 +194 315 3.009 2085.3 +195 316 2.984 2089.8 +196 317 2.957 2094.7 +197 318 2.934 2098.6 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new file mode 100644 index 0000000..fe47a18 --- /dev/null +++ b/inst/stics/V11.0.0/example/mais3_tec.xml @@ -0,0 +1,361 @@ + + + + + + + + + + + + + + + + + + + + + + + + + 110 + 0.00 + 24.00 + + + + + 121 + 2.00000 + 10.00000 + 2 + + + + + + + + 1.00000 + + + 120.00000 + + + 0.11000 + + + + + + + + + + + + + 320 + straw+roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/mais_ini.xml b/inst/stics/V11.0.0/example/mais_ini.xml new file mode 100644 index 0000000..6d15b9d --- /dev/null +++ b/inst/stics/V11.0.0/example/mais_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + snu + 0.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + + + + + + + + + + + + + + + + 23.5 + 21.6 + 23.9 + 27.6 + 0.0 + + + 32.0 + 12.0 + 9.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/maize.obs b/inst/stics/V11.0.0/example/maize.obs new file mode 100644 index 0000000..8718e27 --- /dev/null +++ b/inst/stics/V11.0.0/example/maize.obs @@ -0,0 +1,19 @@ +ian;mo;jo;jul;lai(n);masec(n);mafruit;AZnit(1);AZnit(2);AZnit(3);QNplante +1996; 4; 16; 107; -999.99; -999.99; -999.99; 32.0; 12.0; 9.0; -999.99 +1996; 5; 14; 135; 0.0; 0.0; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 6; 11; 163; 0.222; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 6; 19; 171; 0.692; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 6; 26; 178; 1.301; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 7; 2; 184; -999.99; 2.274; -999.99; -999.99; -999.99; -999.99; 65.3 +1996; 7; 5; 187; 2.731; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 7; 15; 197; 4.195; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 7; 24; 206; 5.036; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 7; 25; 207; -999.99; 8.962; 0.0; -999.99; -999.99; -999.99; 175.4 +1996; 8; 2; 215; 5.024; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 8; 9; 222; 4.996; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 8; 14; 227; -999.99; 12.367; 0.0; -999.99; -999.99; -999.99; 178.1 +1996; 8; 20; 233; 4.885; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 9; 3; 247; -999.99; 17.94; 6.13; -999.99; -999.99; -999.99; 233.0 +1996; 9; 12; 256; 4.565; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 10; 15; 289; -999.99; 20.5; 10.52; -999.99; -999.99; -999.99; 257.5 +1996; 10; 23; 297; -999.99; -999.99; -999.99; 45.0; 49.0; 25.0; -999.99 diff --git a/inst/stics/V11.0.0/example/mod_bmaize.sti b/inst/stics/V11.0.0/example/mod_bmaize.sti new file mode 100644 index 0000000..5d13f17 --- /dev/null +++ b/inst/stics/V11.0.0/example/mod_bmaize.sti @@ -0,0 +1,221 @@ + Balance of the STICS simulation v11.0.0-rc2_2026-06-11 , model culture + ************************************************************** + 1. INPUT DATA + ******************* + Weather file : climaisj + Cropping practices file: Mais_tec.xml + Plant file : corn_plt.xml + Cultivar: Furio variety group = 4 + Initialisations file : mais_ini.xml + Initial soil values : solmais + Z (cm) Water (%) NO3 (kg/ha) NH4 (kg/ha) + 25. 23.5 32.0 0.0 + 30. 21.6 12.0 0.0 + 35. 23.9 9.0 0.0 + 30. 27.6 0.0 0.0 + + Start of simulation : 21-apr-1996 day 112 + End of simulation : 25-dec-1996 day 360 (or 360) + Irrigation read + Fertilisation read + Method of PET calculation: Penman reading + + Irrigation + 26-jun-1996 20. + 3-jul-1996 24. + 11-jul-1996 29. + 16-jul-1996 29. + 18-jul-1996 28. + 22-jul-1996 31. + 25-jul-1996 21. + 29-jul-1996 21. + 1-aug-1996 23. + 5-aug-1996 18. + 8-aug-1996 22. + 19-aug-1996 16. + 26-aug-1996 16. + 5-sep-1996 30. + 13-sep-1996 29. + 20-sep-1996 20. + Irrigation: Number of irrigations =16 + Total quantity applied = 377. mm + + Fertilisation: Number of applications = 1 + date amount (kg N/ha) fertilizer type + ----------- ---------------- --------------- + 21-apr-1996 220. 2 + + Organic residues and/or soil tillage + Residues of type 1 added on day 112 DM= 1.0 t/ha Capp= 420. kg/ha Napp= 7. kg/ha Nmin= 0. kg/ha + Tillage made on day 112 over 24. - 25. cm + + 2. CROP DEVELOPMENT + ******************* + development driven by thermal units + temperature used : air temperature + + stage BBCH date units cumulative units lai + ------------ ----------- ----- ---------------- --- + sowing 00 26-apr-1996 0. 0. + Vegetative stages + ger calculated 05 2-may-1996 42. 42. 0.0 + lev calculated 09 9-may-1996 43. 85. 0.0 + amf calculated 35 11-jun-1996 283. 368. 0.5 + lax calculated 55 25-jul-1996 560. 928. 5.8 + lan calculated 26-oct-1996 0. 928. 3.3 + Reproductive stages + flo calculated 65 29-jul-1996 992. 992. + drp calculated 71 17-aug-1996 242. 1233. 5.8 + mat calculated 89 26-oct-1996 618. 1851. 3.3 + crop harvest 99 26-oct-1996 0. 1851. 3.3 + debdes calculated 75 26-oct-1996 0. 1851. 3.3 + + Length of cycle =183 days + Harvest operation: whole plant harvested + Harvest objective: physiological maturity + + Attention: for this simulation the date of harvest is a finishing date + the sum of units from sowing till harvest can not have been reached on this date + + 3. GROWTH AND COMPONENTS OF YIELD + ********************************** + 26-oct-1996 + Aerial biomass at harvest (0% water)= 24.19 t/ha + Grain or fruit Yield (0% water) = 14.85 t/ha + Grain or fruit Yield (40.% water) = 24.75 t/ha + + Senescent aerial biomass (0% water) = 0.81 t/ha + + Number of grains or fruits = 4500. /m2 + Plant density = 9.5 /m2 + Grain or fruit weight (40.% water) = 0.550 g + Growth rate (lag phase) = 23.2 mg/m2/j + Number of emerged leaves = 11 + Number of hot or cold days = 0 + + Quantity of N in the crop = 324. kg/ha + Quantity of N in grains or fruits = 182. kg/ha + Quantity of N in roots = 70. kg/ha + + N content of whole plant = 1.34 % DM + N concentration of grains or fruits = 1.22 % DM + Protein content of grains or fruits = 7.0 % DM + + Nitrogen fertiliser efficiency = 0.57 + Harvest index = 0.61 + + Composition of grains or fruits + Dry matter content = 60. % FW + Nitrogen content = 0.73 % FW + + 4. WATER and NITROGEN BALANCE over the crop life + ************************************************ + Cumulative ETMax (eos+eop) = 627. mm + Cumulative AET = 627. mm + Cumulative Evaporation = 83. mm + Cumulative Transpiration = 545. mm + Cumulative Rainfall+irrigation = 668. mm + + Water reserve used by plant = 112. mm + Maximum rooting depth = 120. cm + + Mean STRESS indices : swfac turfac inns tcult-tair exofac etr/etm etm/etr + vegetative phase (lev-drp) 1.00 1.00 0.97 0.95 0.00 1.00 1.00 + reproductive phase (drp-mat) 1.00 1.00 1.00 0.00 0.00 1.00 1.00 + + 5. WATER, NITROGEN, CARBON BALANCE over the whole simulation period (249 days) + ******************************************************************************* + Normalised days at 15.degree C: Humus = 257. Residues = 250. + Potential mineralisation rate = 0.48 kg N/ha/day or 3.56% per year +WATER BALANCE (mm) + initial water content 323. final water content 346. + rain 527. evaporation 91. + irrigation 377. transpiration 545. + capillary rise -0. runoff 0. + deep infiltration 225. + mole drainage 0. + leaf interception 0. + mulch interception 21. + ineffective irrigation 0. + ----------------------------- ----------------------------- + TOTAL INITIAL 1227. TOTAL FINAL 1227. + +PLANT NITROGEN BALANCE (kg N/ha) + ------ Initial pools ------ ------- Final pools ------- + Aerial plant N 0. 0. + Root N 0. 0. + Perennial reserves N 0. 0. + Total plant N 0. 0. + ------- Input fluxes ------ ------ Output fluxes ------ + N uptake 324. N exported 182. + N fixation 0. N returned to soil 212. + ---------------------------- ---------------------------- + TOTAL INITIAL 324. TOTAL FINAL 393. + + +SOIL MINERAL NITROGEN BALANCE (kg N/ha) + ------ Initial pools ------ ------- Final pools ------- + NH4-N 0. 0. + NO3-N 53. 1. + Total mineral N 53. 1. + ------- Input fluxes ------ ------ Output fluxes ------ + plant N uptake 324. + rain 11. leaching 4. + irrigation 41. leaching in mole drains 0. + fertiliser 220. fertiliser immobilisat. 33. + fertiliser volatilisat. 33. + humus mineralisation 124. manure N volatilisat. 0. + residue mineralisation -25. (N2+N2O)-N losses 29. + ---------------------------- ---------------------------- + TOTAL INITIAL 425. TOTAL FINAL 425. + +SOIL ORGANIC NITROGEN BALANCE (kg N/ha) + ------ Initial pools ------ ------- Final pools ------- + Active humified 1760. 1681. + Inert humified 3268. 3268. + Zymogeneous biomass 0. 56. + Organic residues 0. 43. + Deep root residues 0. 0. + Mulch residues 0. 132. + Total organic pools 5028. 5181. + ------- Input fluxes ------ ------ Output fluxes ------ + fertiliser immobilis. 33. + organic fertiliser 7. + crop residues 142. + fallen leaves 0. Priming (PE) 0. + trimmed leaves 0. Mineralisation - PE 100. + dead roots 70. + dead perennial organs 0. + ---------------------------- ---------------------------- + TOTAL INITIAL 5280. TOTAL FINAL 5280. + +SOIL ORGANIC CARBON BALANCE (kg C/ha) + ------ Initial pools ------ ------- Final pools ------- + Active humified 16760. 15714. + Inert humified 31126. 31126. + Zymogeneous biomass 0. 931. + Organic residues 0. 2135. + Deep root residues 0. 0. + Mulch residues 0. 3653. + Total organic pools 47886. 53558. + ------- Input fluxes ------ ------ Output fluxes ------ + fertiliser immobilis. 0. + organic fertiliser 420. + crop residues 3921. + fallen leaves 0. Priming (PE) 0. + trimmed leaves 0. Mineralisation - PE 2091. + dead roots 3422. + dead perennial organs 0. + ---------------------------- ---------------------------- + TOTAL INITIAL 55649. TOTAL FINAL 55649. + +Heterotrophic Respiration (kg C/ha): Residues = 931. + Humus = 1160. + Total = 2091. + +Cumulative N2O emissions (kg N/ha): nitrification = 0.00 + denitrification = 0.00 + Total = 0.00 + +Aboveground CROP RESIDUES returned to soil: DM = 9.3 t/ha C content = 3921. kg/ha N content = 142. kg/ha C/N = 27.6 +Total CROP RESIDUES returned to soil:straw+roots DM = 17.5 t/ha C content = 7344. kg/ha N content = 212. kg/ha C/N = 34.7 diff --git a/inst/stics/V11.0.0/example/mod_profil_Chum.sti b/inst/stics/V11.0.0/example/mod_profil_Chum.sti new file mode 100644 index 0000000..8599204 --- /dev/null +++ b/inst/stics/V11.0.0/example/mod_profil_Chum.sti @@ -0,0 +1,122 @@ + Chum + cm 112 122 132 142 152 162 172 182 192 202 212 222 232 242 252 262 272 282 292 302 312 322 332 342 352 + 1 463.84460 463.27490 462.62280 461.96362 461.06604 459.95441 459.43576 458.89783 457.94022 456.04413 453.68399 451.77451 450.11343 448.26514 446.91354 445.97894 444.91653 443.96323 443.13971 442.17963 442.42078 443.74673 445.27417 447.67917 449.87015 + 2 463.84460 462.92322 461.83862 460.92184 459.53244 459.53244 459.53244 458.15436 456.90176 454.53387 451.90485 449.89972 447.89978 446.04993 444.55145 443.31732 442.24265 441.26892 440.29785 439.22342 438.48105 437.98306 437.69943 437.40793 437.22269 + 3 463.84460 462.57059 461.46335 460.34979 458.80338 457.89539 457.89539 456.44318 454.96814 452.66351 450.07291 448.05640 446.06775 444.21506 442.71362 441.46918 440.39233 439.41406 438.45044 437.39554 436.66818 436.17587 435.86746 435.50540 435.26379 + 4 463.84460 462.50192 461.38965 460.20166 458.68863 457.19516 457.19516 455.72098 454.23325 451.98026 449.41827 447.38647 445.40332 443.54346 442.03555 440.77866 439.69714 438.71216 437.75281 436.70755 435.97491 435.47464 435.16260 434.80450 434.55084 + 5 463.84460 462.49124 461.37384 460.19135 458.70740 456.44217 455.09299 453.60513 452.14389 449.95087 447.46512 445.42529 443.51196 441.65042 440.17087 439.02945 437.94620 436.95718 436.00388 434.95773 434.17874 433.64246 433.30823 432.93439 432.66495 + 6 463.84460 462.48123 461.35883 460.18115 458.72281 456.49796 454.61502 453.19608 451.72311 449.57074 447.10684 445.05280 443.14230 441.27325 439.78699 438.63535 437.54733 436.55182 435.60123 434.56241 433.77808 433.23398 432.89606 432.52542 432.25403 + 7 463.84460 462.47177 461.34451 460.17090 458.73523 456.55988 454.48996 453.19809 451.71289 449.59555 447.14938 445.08035 443.17072 441.29294 439.79922 438.63708 437.54358 436.54099 435.59183 434.55875 433.76868 433.21680 432.87509 432.50699 432.23355 + 8 463.84460 462.46289 461.33090 460.16080 458.74527 456.61423 454.49561 453.17520 451.67862 449.59317 447.16312 445.08023 443.17136 441.28540 439.79956 438.62766 437.52902 436.51978 435.57178 434.54388 433.74838 433.18903 432.84372 432.47781 432.20242 + 9 463.84460 462.45441 461.31784 460.15079 458.75323 456.66196 454.46545 453.09827 451.59116 449.53479 447.11966 445.02414 443.11615 441.22266 439.75827 438.57736 437.47400 436.45865 435.51312 434.48999 433.68948 433.12323 432.77454 432.41083 432.13354 + 10 463.84460 462.44656 461.30573 460.14127 458.75974 456.70407 454.28891 452.68292 451.16708 449.13879 446.73904 444.63336 442.72760 440.82855 439.35941 438.17111 437.06421 436.04385 435.09991 434.08200 433.27753 432.70535 432.35382 431.99243 431.71365 + 11 463.84460 462.43918 461.29419 460.13202 458.76480 456.74124 454.74692 453.42609 451.89835 449.89053 447.49881 445.37839 443.46985 441.56070 440.08347 438.88531 437.77234 436.74478 435.79990 434.78418 433.97382 433.39438 433.03912 432.67865 432.39752 + 12 463.84460 462.43240 461.28345 460.12320 458.76874 456.77417 454.73074 453.38580 451.84933 449.86331 447.48273 445.35205 443.44394 441.52850 440.04605 438.84070 437.72372 436.69110 435.74670 434.73459 433.92017 433.33505 432.97699 432.61813 432.33539 + 13 463.84460 462.42603 461.27338 460.11490 458.77197 456.80353 454.75641 453.40009 451.85532 449.88898 447.51819 445.37778 443.46985 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0.00000; 0.00000; 0.00000; 1.22319; 8.68004; 225.42294; 0.00000; 0.00000; 0.00000; 0.74754; 0.00000; 0.00000; 0.00000; 0.00000; 0.00000; 60.27462; 24.75000; 0.00000; 0.01000; 181.64421; 0.00000; 0.00000; 0.40000; 0.80945; 1.33939; 0.99174; 7.10000; 0.00000; 0.00000; 1.00000; 0.92587; 9.50000; 1.00000; 0.00000; 0.00000; 0.00000; 1.00000; 1.24079; 1.00000; 1.00000; 1.00000; 1.00000; 124.06221; -24.50252 diff --git a/inst/stics/V11.0.0/example/modhistory.sti b/inst/stics/V11.0.0/example/modhistory.sti new file mode 100644 index 0000000..1b4474a --- /dev/null +++ b/inst/stics/V11.0.0/example/modhistory.sti @@ -0,0 +1,372 @@ + ----------------------------------------------------------------------------------------- + Stics history file Creation date: 2026/07/13-14:30:27 + STICS Version: v11.0.0-rc2_2026-06-11 + ----------------------------------------------------------------------------------------- + + + + GENERAL PARAMETERS USEFUL FOR THE SIMULATION + ********************************************* + Nitrogen stress actived 1 + Water stress actived 1 + Depth for mineral N and water stocks calculation = profmes 1 + Climatic series = reset of the initial conditions 1 + Biomass and yield conservation after harvest 1 + Take account of mulch effect (drying out of soil surface) 1 + Fruit load = all fruits (including ripe ones) 1 + Hourly microclimate 1 + Separator in report = ; + P_parsurrg 0.479999989 + P_coefb 8.15000013E-02 + P_proprac 0.200000003 + P_y0msrac 0.699999988 + P_dacohes 0.699999988 + P_daseuilbas 1.39999998 + P_daseuilhaut 2.00000000 + P_beta 1.39999998 + P_lvopt 0.500000000 + P_difN 4.50000018E-02 + P_plNmin 10.0000000 + P_irrlev 20.0000000 + P_QNpltminINN 0.00000000 + Nitrogen fixation by legumes = nodule activity 2 + Mineral nitrogen inhibition = nitrogen amount 2 + P_tmin_mineralisation 0.00000000 + P_FTEMh 0.119999997 + P_FTEMha 25.0000000 + P_TREFh 15.0000000 + P_FTEMr 0.103000000 + P_FTEMra 12.0000000 + P_TREFr 15.0000000 + P_gmin1 6.99999975E-04 + P_gmin2 2.51899995E-02 + P_gmin3 1.49999997E-02 + P_gmin4 0.112000003 + P_gmin5 8.50000000 + P_gmin6 5.99999987E-02 + P_gmin7 11.0000000 + P_Wh 0.104999997 + P_pHminvol 5.50000000 + P_pHmaxvol 8.50000000 + P_Vabs2 2.00000000 + P_Xorgmax 400.000000 + P_hminm 0.250000000 + P_hoptm 0.899999976 + P_alphapH 4.99999989E-03 + P_dpHvolmax 1.00000000 + P_pHvols 8.60000038 + P_fhminsat 0.500000000 + P_fredkN 0.250000000 + P_fredlN 0.500000000 + P_fNCBiomin 3.99999991E-02 + P_fredNsup 0.500000000 + P_Primingmax 3.00000000 + P_pminruis 5.00000000 + P_diftherm 5.36999991E-03 + P_Bformnappe 0.769999981 + P_rdrain 1.00000000 + P_psihumin -1.50000000 + P_psihucc -2.99999993E-02 + P_prophumtasssem 1.20000005 + P_prophumtassrec 1.00000000 + calculation of groundwater if drainage = average 1 + P_proflabour 30.0000000 + P_proftravmin 5.00000000 + P_hminn 0.300000012 + P_hoptn 0.899999976 + P_pHminnit 4.00000000 + P_pHmaxnit 7.19999981 + nh4_min (mg N/l) 1.00000000 + pHminden 5.59999990 + pHmaxden 9.19999981 + wfpsc 0.620000005 + tdenitopt_gauss 47.0000000 + scale_tdenitopt 25.0000000 + Kd (mg N/l) 148.000000 + kdesat (d-1) 3.00000000 + Nitrification rate dependence on NH4 : linear + P_fnx 0.800000012 + Temperature function for nitrification : Gaussian + tnitopt_gauss 32.5000000 + scale_tnitopt 16.0000000 + Nitrification N20 ratio : variable + Hourly WFPS calculation for nitrification + denitrification Soil parameter dependent + denitrification Denitrification N20 ratio variable + P_cmin_pdenit 1.00000000 + Hourly WFPS calculation for denitrification + P_kbio 1.21999998E-02 + P_yres 0.620000005 + P_CroCo 1.00000000 + P_akres 0.00000000 + P_bkres 0.600000024 + P_awb 30.1000004 + P_bwb -275.000000 + P_cwb 6.00000000 + P_ahres 0.910000026 + P_bhres 16.2000008 + P_CNresmin 8.00000000 + P_CNresmax 100.000000 + P_qmulchruis0 1.00000000 + P_mouillabilmulch 0.400000006 + P_kcouvmlch 0.370000005 + P_albedomulchresidus 0.100000001 + codeNmindec 2 + rapNmindec 1.00000005E-03 + fNmindecmin 0.100000001 + + TECHNICAL PARAMETERS NEEDED FOR THE SIMULATION, file: fictec1.txt + ********************************************************* + P_nbjtrav 1 + P_jultrav P_profres P_proftrav + 112 24. 25. + P_nbjres 1 + P_julres P_coderes P_qres P_Crespc P_CsurNres P_Nminres P_eaures + 112 1 1.0 42.0 60.0 0.0 0.0 + P_iplt0 117 + P_profsem 5.00000000 + P_densitesem 9.50000000 + P_variete 4 + P_interrang 2.00000000 + P_orientrang 0.00000000 + P_code_strip 2 + P_nrow 1 + P_effirr 1.00000000 + nap 16 + P_julapI,P_doseI 178 20.0000000 + P_julapI,P_doseI 185 24.0000000 + P_julapI,P_doseI 193 29.0000000 + P_julapI,P_doseI 198 29.0000000 + P_julapI,P_doseI 200 28.0000000 + P_julapI,P_doseI 204 31.0000000 + P_julapI,P_doseI 207 21.0000000 + P_julapI,P_doseI 211 21.0000000 + P_julapI,P_doseI 214 23.0000000 + P_julapI,P_doseI 218 18.0000000 + P_julapI,P_doseI 221 22.0000000 + P_julapI,P_doseI 232 16.0000000 + P_julapI,P_doseI 239 16.0000000 + P_julapI,P_doseI 249 30.0000000 + P_julapI,P_doseI 257 29.0000000 + P_julapI,P_doseI 264 20.0000000 + P_codlocirrig 1 + P_profmes 120.000000 + P_concirr 0.109999999 + napN 1 + P_julapN,P_doseN,P_engrais 112 220.000000 2 + P_engamm 0.750000000 + P_orgeng 42.0000000 + P_deneng 0.129999995 + P_voleng 0.300000012 + P_codlocferti 1 + P_irecbutoir 300 + P_ressuite straw+roots + P_code_autoressuite 2 + harvest = all plant harvest + harvest at physiological maturity + P_codejourdes 2 + + PLANT PARAMETERS NEEDED FOR THE SIMULATION + ********************************************************* + P_fplt corn_plt.xml + P_codeplante mai + monocotyledon 1 + P_tdmin 6.00000000 + P_tdmax 32.0000000 + P_codetemp 1 + driving temperature, air + day temperature + P_codephot 2 + P_tgmin 8.00000000 + P_codeperenne 1 + annual + germination or latency = yes + P_stpltger 35.0000000 + plantlet growth = hypocotyle growth + P_belong 2.19999999E-02 + P_celong 2.03999996 + P_elmax 8.00000000 + P_nlevlim1 50 + P_nlevlim2 50 + P_vigueurbat 1.00000000 + P_phyllotherme 70.0000000 + P_laicomp 0.00000000 + P_tcmin 8.00000000 + P_tcmax 32.0000000 + P_tcxstop 35.0000000 + leaf dynamics = LAI + P_vlaimax 2.20000005 + P_pentlaimax 5.50000000 + P_udlaimax 3.00000000 + P_ratiodurvieI 1.00000000 + P_ratiosen 0.800000012 + P_abscission 0.00000000 + P_parazofmorte 13.0000000 + P_innturgmin 0.300000012 + P_dlaimin 0.00000000 + LAI calculation option, LAInet=LAIbrut-senes + P_durviesupmax 0.400000006 + p%P_codetransrad 1 + p%P_codebeso 1 + temin=tcmin and temax=tcmax + P_temax 32.0000000 + P_teoptbis 32.0000000 + P_efcroijuv 1.89999998 + P_efcroiveg 3.79999995 + P_efcroirepro 3.79999995 + P_coefmshaut 0.00000000 + slamin 180.000000 + P_envfruit 0.100000001 + P_sea 100.000000 + P_code_acti_reserve 2 + growing dynamics = determinate growing plant + P_cgrain 5.00000007E-02 + P_cgrainv0 0.111000001 + P_irazomax 0.565999985 + unit Harvest Index = degree days + thermal stress on filling + P_tminremp 0.00000000 + P_tmaxremp 40.0000000 + P_sensanox 0.00000000 + P_stoprac lax + P_sensrsec 0.00000000 + P_contrdamax 0.00000000 + P_rayon 1.99999996E-02 + root driving temperature = soil + root density = true density + P_draclong 5000.00000 + P_debsenrac 1500.00000 + P_lvfront 5.00000007E-02 + P_longsperac 11000.0000 + P_tletale -5.00000000 + P_tdebgel 0.00000000 + P_h2ofeuilverte 0.899999976 + P_h2ofeuiljaune 0.150000006 + P_h2otigestruc 0.600000024 + P_h2oreserve 0.699999988 + P_h2ofrvert 0.400000006 + P_tempdeshyd 4.99999989E-03 + water requirements = crop coefficient + P_kmax 1.20000005 + P_Vmax1 1.79999997E-03 + P_Kmabs1 50.0000000 + P_Vmax2 1.70000009E-02 + P_Kmabs2 25000.0000 + P_adil 3.50000000 + P_bdil 0.370000005 + P_masecNmax 1.00000000 + P_INNmin 0.300000012 + P_INNimin -0.500000000 + P_inngrain1 2.00000000 + P_inngrain2 2.00000000 + P_bdilmax 0.370000005 + calculation nitrogen requirements = isolated plants (new calculation) + P_Nmeta 4.80000019 + P_masecmeta 3.99999991E-02 + P_Nreserve 1.50000000 + nitrogen effect on nb fruit and grain + stadebbchplt00 + stadebbchger05 + stadebbchlev09 + stadebbchamf35 + stadebbchlax55 + stadebbchsen85 + stadebbchflo65 + stadebbchdrp71 + stadebbchdebdes75 + stadebbchmat89 + stadebbchrec99 + P_codevar Furio + P_stlevamf 275.000000 + P_stamflax 550.000000 + P_stlevdrp 1145.00000 + P_stflodrp 250.000000 + P_stdrpdes 650.000000 + P_adens -0.119999997 + P_bdens 5.00000000 + P_hautbase 0.00000000 + P_hautmax 2.50000000 + P_khaut 0.699999988 + P_durvieF 200.000000 + P_dlaimaxbrut 1.59999996E-03 + P_innsen 1.00000000 + P_rapsenturg 0.00000000 + radiation interception = Beers law + P_extin 0.699999988 + P_temin 8.00000000 + P_teopt 24.0000000 + P_slamax 250.000000 + P_tigefeuil 0.250000000 + P_pgrainmaxi 0.330000013 + P_vitpropsucre 0.00000000 + P_vitprophuile 0.00000000 + P_vitirazo 1.09999999E-02 + P_deshydbase 8.00000038E-03 + P_nbjgrain 20 + P_nbgrmin 1500.00000 + P_nbgrmax 4500.00000 + P_stdrpmat 640.000000 + P_vitircarbT 1.09999999E-03 + P_croirac 0.150000006 + P_psisto 12.0000000 + P_psiturg 5.00000000 + P_swfacmin 0.100000001 + with the option laibrut the residuel lai disappears entirely on the first day of senescence + no bud break if no dormancy + ******** file station ******** + P_zr 2.50000000 + P_NH3ref 0.00000000 + P_concRR 1.99999996E-02 + P_ra 50.0000000 + P_aangst 0.180000007 + P_bangst 0.620000005 + P_albveg 0.230000004 + P_latitude 45.0000000 + P_patm 1000.00000 + P_corecTrosee 1.00000000 + P_codeclichange 1 + P_codeetp 1 + P_codeetp Penman reading + P_alphapt 1.25999999 + P_codernet 2 + P_codecaltemp 1 + P_codaltitude 1 + + SOIL PARAMETERS + ********************************************************* + P_typsol P_argi P_Norg P_profhum P_calc P_pH P_concseuil P_albedo P_q0 P_ruisolnu P_obstarac P_pluiebat P_mulchbat P_zesx P_cfes P_z0solnu P_CsurNsol P_finert P_penterui + solmais 22.00 0.12 35.00 1.00 7.00 0.00 0.20 0.00 0.00 200.00 50.00 0.50 60.00 5.00 0.01 0.00 0.65 0.33 + P_codecailloux P_codemacropor P_codefente P_codrainage P_coderemontcap P_codenitrif P_codedenit + (1 active , 2 inactive) + 2 2 2 2 2 2 2 + P_profimper P_ecartdrain P_ksol P_profdrain P_capiljour P_humcapil P_profdenit P_vpotdenit + 10.00 0.00 0.00 0.00 0.00 10.00 20.00 2.00 + P_epc P_hccf P_hminf P_daf P_cailloux P_typecailloux P_infil P_epd + 25.00 22.50 8.50 1.16 0.00 1 50.00 10 + 30.00 25.40 11.60 1.29 0.00 1 50.00 10 + 35.00 25.80 15.30 1.15 0.00 1 50.00 10 + 30.00 28.70 19.00 0.91 0.00 1 50.00 10 + 0.00 0.00 0.00 0.00 0.00 1 50.00 10 + + Parameters of param_newform + ********************************************* + calculation of hourly dew temperature : linear interpolation(actual calculation) + P_code_humirac 1 + obstarac too big : obstarac = soil depth + + ********************************************* + INITIALISATIONS PLANT + codeinstal : 0 + masec(0) : 0.00000000 0.00000000 0.00000000 + lai(0) : 0.00000000 0.00000000 0.00000000 + P_QNplantenp0 : 0.00000000 0.00000000 0.00000000 + P_zrac0 : 0.00000000 + P_stade0 : snu + INN0 : 0.00000000 0.00000000 0.00000000 + Attention humcapil > hcc : risk of excess water + problem with your profile output dates --> they have been recalculated + Initial values over the soil depth (120 cm): SWC = 323. mm SMN = 53.0 kg N/ha + Program end ... + ----------------------------------------------------------------------------------------- + Stics history file end End date: 2026/07/13-14:30:27 + ----------------------------------------------------------------------------------------- diff --git a/inst/stics/V11.0.0/example/orgpoi_ini.xml b/inst/stics/V11.0.0/example/orgpoi_ini.xml new file mode 100644 index 0000000..52ac3a8 --- /dev/null +++ b/inst/stics/V11.0.0/example/orgpoi_ini.xml @@ -0,0 +1,86 @@ + + + 2 + + snu + 0.0000 + 0.0000 + 0.0000 + + + 0.0000 + 0.0000 + 0.0000 + 0.0000 + 0.0000 + + + + snu + 0.0000 + 0.0000 + 0.0000 + + + 0.0000 + 0.0000 + 0.0000 + 0.0000 + 0.0000 + + + + + 0.0000 + 0.0000 + 0.0000 + 0.0000 + 0.0000 + + + 30.0000 + 10.0000 + 5.0000 + 0.0000 + 0.0000 + + + 0.0000 + 0.0000 + 0.0000 + 0.0000 + 0.0000 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/patate_ini.xml b/inst/stics/V11.0.0/example/patate_ini.xml new file mode 100644 index 0000000..171ceca --- /dev/null +++ b/inst/stics/V11.0.0/example/patate_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + snu + 0.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + + + + + + + + + + + + + + + + 22.8 + 26.6 + 27.0 + 27.0 + 0.0 + + + 17.0 + 12.0 + 13.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/patate_tec.xml b/inst/stics/V11.0.0/example/patate_tec.xml new file mode 100644 index 0000000..f8079b7 --- /dev/null +++ b/inst/stics/V11.0.0/example/patate_tec.xml @@ -0,0 +1,378 @@ + + + + + + + + + + + + + + + + + + + + + + + + + 0 + 0.00 + 0.00 + + + + + 106 + 15.00000 + 3.50000 + 1 + + + + + + + + 0.80000 + + + 120.00000 + + + 0.02000 + + + + + + + + + + 106 + 220.00 + 1 + + + + + + 720 + straw+roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/pea.obs b/inst/stics/V11.0.0/example/pea.obs new file mode 100644 index 0000000..b1e25b6 --- /dev/null +++ b/inst/stics/V11.0.0/example/pea.obs @@ -0,0 +1,4 @@ +ian;mo;jo;jul;masec(n);mafruit;Qles;QNplante;CNgrain;drat +1998; 4; 17; 107; -999.99; -999.99; 1.0301; -999.99; -999.99; 29.7064 +1998; 4; 30; 120; -999.99; -999.99; 2.3043; -999.99; -999.99; 53.9853 +1998; 7; 29; 210; 7.62; 4.85; 2.7717; 209; 3.567; 63.2851 diff --git a/inst/stics/V11.0.0/example/pea_ini.xml b/inst/stics/V11.0.0/example/pea_ini.xml new file mode 100644 index 0000000..090ac36 --- /dev/null +++ b/inst/stics/V11.0.0/example/pea_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + snu + 0 + 0 + 0 + + + 0 + 0 + 0 + 0 + 0 + + + + + + + + + + + + + + + + + + + 25.3 + 21.3 + 22 + 23.8 + 0 + + + 23 + 11.6 + 11.8 + 8.7 + 0 + + + 9.5 + 2.5 + 0.6 + 0.3 + 0 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/pea_sta.xml b/inst/stics/V11.0.0/example/pea_sta.xml new file mode 100644 index 0000000..42db0cd --- /dev/null +++ b/inst/stics/V11.0.0/example/pea_sta.xml @@ -0,0 +1,86 @@ + + + + 2.50000 + 0.00000 + 0.02 + 48.56000 + 1000.00000 + 20.00000 + + + + + + + + 50.00000 + 0.23000 + 0.18000 + 0.62000 + 1.00000 + + + + + 0.70000 + 6.00000 + 0.50000 + 0.16000 + 0.00400 + 0.59000 + + + + + + diff --git a/inst/stics/V11.0.0/example/pea_tec.xml b/inst/stics/V11.0.0/example/pea_tec.xml new file mode 100644 index 0000000..db6983c --- /dev/null +++ b/inst/stics/V11.0.0/example/pea_tec.xml @@ -0,0 +1,356 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + 69 + 5.00000 + 110.00000 + 1 + + + + + + + + 1.00000 + + + 90.00000 + + + 0.00000 + + + + + + + + + + + + + 999 + straw+roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/piadan4_tec.xml b/inst/stics/V11.0.0/example/piadan4_tec.xml new file mode 100644 index 0000000..691c06a --- /dev/null +++ b/inst/stics/V11.0.0/example/piadan4_tec.xml @@ -0,0 +1,370 @@ + + + + + + + + + + + + + + + 70 + 1 + 2.33 + 42.00 + 80.00 + 0.00 + 0.00 + + + + + + + + + + + + + 70 + 0.00 + 20.00 + + + + + 77 + 4.00000 + 110.00000 + 1 + + + + + + + + 1.00000 + + + 90.00000 + + + 0.00000 + + + + + + + + + + + + + 365 + straw+roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/potato.obs b/inst/stics/V11.0.0/example/potato.obs new file mode 100644 index 0000000..e413d07 --- /dev/null +++ b/inst/stics/V11.0.0/example/potato.obs @@ -0,0 +1,8 @@ +ian;mo;jo;jul;masec(n);mafruit;AZnit(1);AZnit(2);AZnit(3);QNplante +1997; 6; 18; 169; 3.04; 0.79; -999.99; -999.99; -999.99; 136 +1997; 7; 2; 183; 5.28; 2.09; -999.99; -999.99; -999.99; 185 +1997; 7; 15; 196; 9.9; 6; -999.99; -999.99; -999.99; 254 +1997; 7; 23; 204; 11.81; 7.62; -999.99; -999.99; -999.99; 226 +1997; 8; 20; 232; 18.31; 14.57; -999.99; -999.99; -999.99; 282 +1997; 8; 25; 237; -999.99; -999.99; 14.5; 9.5; 10.5; -999.99 +1997; 9; 4; 247; -999.99; 13.6; 25; 13.5; 11; -999.99 diff --git a/inst/stics/V11.0.0/example/prairie_ini.xml b/inst/stics/V11.0.0/example/prairie_ini.xml new file mode 100644 index 0000000..0e8a8fd --- /dev/null +++ b/inst/stics/V11.0.0/example/prairie_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + lev + 0.2 + 0 + 100 + + + 4 + 8 + 0.2 + 0 + 0 + + + + + + + + + + + + + + + + + + + 0 + 0 + 0 + 0 + 0 + + + 10 + 10 + 10 + 0 + 0 + + + 0 + 0 + 0 + 0 + 0 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/prairiej.1995 b/inst/stics/V11.0.0/example/prairiej.1995 new file mode 100644 index 0000000..05cac5f --- /dev/null +++ b/inst/stics/V11.0.0/example/prairiej.1995 @@ -0,0 +1,365 @@ +prairie 1995 1 1 1 3.3 7.4 4.0 0.6 0.0 -999.9 -999.9 330.0 +prairie 1995 1 2 2 1.6 4.7 2.3 0.8 0.5 -999.9 -999.9 330.0 +prairie 1995 1 3 3 -4.7 4.0 8.5 0.0 0.0 -999.9 -999.9 330.0 +prairie 1995 1 4 4 -3.4 2.6 8.4 0.0 0.5 -999.9 -999.9 330.0 +prairie 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+++ b/inst/stics/V11.0.0/example/prof.mod @@ -0,0 +1,4 @@ +2 +Chum +10 +01 01 2000 diff --git a/inst/stics/V11.0.0/example/proto_rice.obs b/inst/stics/V11.0.0/example/proto_rice.obs new file mode 100644 index 0000000..b39f711 --- /dev/null +++ b/inst/stics/V11.0.0/example/proto_rice.obs @@ -0,0 +1,9 @@ +ian;mo;jo;jul;lai(n);masec(n);mafruit;chargefruit +1988; 5; 31; 152; 0.23; -999.99; -999.99; -999.99 +1988; 6; 13; 165; 0.38; -999.99; -999.99; -999.99 +1988; 6; 27; 179; 1.8; -999.99; -999.99; -999.99 +1988; 7; 11; 193; 2.63; -999.99; -999.99; -999.99 +1988; 7; 25; 207; 3.35; -999.99; -999.99; -999.99 +1988; 8; 8; 221; 2.7; -999.99; -999.99; -999.99 +1988; 8; 22; 235; 1.93; -999.99; -999.99; -999.99 +1988; 9; 5; 249; 0.7; 10.22; 5.73; 27088 diff --git a/inst/stics/V11.0.0/example/proto_rice_ini.xml b/inst/stics/V11.0.0/example/proto_rice_ini.xml new file mode 100644 index 0000000..9ec93cd --- /dev/null +++ b/inst/stics/V11.0.0/example/proto_rice_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + snu 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312; .905; .442; -999.99; 20.83 +1994; 12; 6; 340; 1.399; 0.905; -999.99; 34.4 +1995; 1; 10; 10; 1.232; 0.994; -999.99; 37.8 +1995; 2; 13; 44; 1.07; 1.10; -999.99; 43.4 +1995; 2; 28; 59; 1.204; 1.27; -999.99; 56.6 +1995; 3; 14; 73; 1.786; 1.99; -999.99; 86.9 +1995; 3; 28; 87; 2.8; 3.13; -999.99; 150.4 +1995; 4; 11; 101; 4.114; 5.17; -999.99; 173.2 +1995; 4; 25; 115; 4.22; 7.69; -999.99; 169 +1995; 5; 9; 129; 3.56; 8.64; -999.99; 170.2 +1995; 5; 23; 143; 2.28; 11.26; -999.99; 141.2 +1995; 6; 6; 157; 1.489; 12.32; 1.36; 150.3 +1995; 6; 19; 170; .487; 12.45; 2.54; 138.4 +1995; 7; 11; 192; 0; 13.06; 4.13; 139.5 diff --git a/inst/stics/V11.0.0/example/readcasj_sta.xml b/inst/stics/V11.0.0/example/readcasj_sta.xml new file mode 100644 index 0000000..0dc1d46 --- /dev/null +++ b/inst/stics/V11.0.0/example/readcasj_sta.xml @@ -0,0 +1,86 @@ + + + + 2.50000 + 0.00000 + 0.02 + 51.00000 + 1000.00000 + 20.00000 + + + + + + + + 50.00000 + 0.23000 + 0.18000 + 0.62000 + 1.00000 + + + + + 0.70000 + 6.00000 + 0.50000 + 0.16000 + 0.00400 + 0.59000 + + + + + + diff --git a/inst/stics/V11.0.0/example/readingj.2004 b/inst/stics/V11.0.0/example/readingj.2004 new file mode 100644 index 0000000..8a63403 --- /dev/null +++ b/inst/stics/V11.0.0/example/readingj.2004 @@ -0,0 +1,274 @@ +reading 2004 1 1 1 1.8 8.4 1.1 -999.9 5.4 2.8 13.8 330.0 +reading 2004 1 2 2 -2.4 6.4 1.0 -999.9 1.8 2.0 11.0 330.0 +reading 2004 1 3 3 -4.1 5.0 1.7 -999.9 0.4 1.1 9.8 330.0 +reading 2004 1 4 4 0.3 8.7 1.7 -999.9 0.2 1.0 13.0 330.0 +reading 2004 1 5 5 0.6 10.6 1.2 -999.9 0.8 1.8 14.0 330.0 +reading 2004 1 6 6 3.0 12.5 3.2 -999.9 3.0 3.3 15.9 330.0 +reading 2004 1 7 7 2.3 10.4 2.1 -999.9 0.2 2.4 14.4 330.0 +reading 2004 1 8 8 4.3 11.1 1.9 -999.9 12.0 4.1 14.6 330.0 +reading 2004 1 9 9 2.3 9.7 2.8 -999.9 0.0 3.4 13.0 330.0 +reading 2004 1 10 10 1.5 12.0 1.6 -999.9 1.0 1.7 13.5 330.0 +reading 2004 1 11 11 3.7 11.7 2.5 -999.9 9.0 5.3 13.5 330.0 +reading 2004 1 12 12 3.0 8.6 2.1 -999.9 8.2 2.5 11.1 330.0 +reading 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+++ b/inst/stics/V11.0.0/example/sorgho_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + snu + 0.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + + + + + + + + + + + + + + + + 23.5 + 21.6 + 23.9 + 27.6 + 0.0 + + + 32.0 + 12.0 + 9.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/sorgho_tec.xml b/inst/stics/V11.0.0/example/sorgho_tec.xml new file mode 100644 index 0000000..2bf04b6 --- /dev/null +++ b/inst/stics/V11.0.0/example/sorgho_tec.xml @@ -0,0 +1,375 @@ + + + + + + + + + + + + + + + 112 + 1 + 1.00 + 42.00 + 60.00 + 0.00 + 0.00 + + + + + + + + + + + + + 112 + 0.00 + 25.00 + + + + + 121 + 3.00000 + 28.00000 + 1 + + + + + + + + 1.00000 + + + 120.00000 + + + 0.11000 + + + + + + + + + + 113 + 180.00 + 1 + + + + + + 289 + straw+roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/sorghum.obs b/inst/stics/V11.0.0/example/sorghum.obs new file mode 100644 index 0000000..787e820 --- 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----------------------------------------------------------------------------------------- + + + problem with your profile output dates --> they have been recalculated + ----------------------------------------------------------------------------------------- + Stics errors file end End date: 2026/07/13-14:30:27 + ----------------------------------------------------------------------------------------- diff --git a/inst/stics/V11.0.0/example/strawberry.obs b/inst/stics/V11.0.0/example/strawberry.obs new file mode 100644 index 0000000..2e002f3 --- /dev/null +++ b/inst/stics/V11.0.0/example/strawberry.obs @@ -0,0 +1,5 @@ +ian;mo;jo;jul;lai(n);masec(n);mafruit;HR(1) +2001; 2; 7; 38; 0.18; 0.9; 0; -999.99 +2001; 3; 21; 80;1.193544; 1.59; 0.6; -999.99 +2001; 5; 16; 136;1.989792; 5.38; 3.10; -999.99 +2001; 6; 13; 164;4.774845;67.81 ; 7.81 ; 3.91 diff --git a/inst/stics/V11.0.0/example/sugarbeet.obs b/inst/stics/V11.0.0/example/sugarbeet.obs new file mode 100644 index 0000000..3b66b12 --- /dev/null +++ b/inst/stics/V11.0.0/example/sugarbeet.obs @@ -0,0 +1,24 @@ +ian;mo;jo;jul;lai(n);masec(n);mafruit;HR(1);HR(2);HR(3);HR(4);HR(5);resmes +1994; 5; 10; 130; 0; 0; 0; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1994; 5; 16; 136; 0.02; 0.01; 0; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1994; 5; 19; 139; 0.03; 0.01; 0; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1994; 5; 24; 144; 0.07; 0.04; 0; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1994; 5; 27; 147; 0.11; 0.053; 0; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1994; 5; 31; 151; 0.15; 0.11; 0; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1994; 6; 1; 152; -999.99; -999.99; -999.99; 19.38; 21.91; 20.75; 20.65; 21.88; 534.15 +1994; 6; 7; 158; 0.49; 0.3; 0.02; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1994; 6; 14; 165; 0.99; 0.95; 0.18; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1994; 6; 16; 167; -999.99; -999.99; -999.99; 15.63; 19.53; 19.24; 20.46; 21.36; 507.38 +1994; 6; 21; 172; 2.3; 2.59; 0.77; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1994; 6; 28; 179; 3.65; 4.46; 1.66; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1994; 7; 1; 182; -999.99; -999.99; -999.99; 11.00; 13.47; 18.13; 20.51; 21.13; 470.25 +1994; 7; 4; 185; 3.57; 6.37; 3.05; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1994; 7; 11; 192; 3.91; 8.43; 4.11; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1994; 7; 12; 193; -999.99; -999.99; -999.99; 16.37; 16.08; 16.46; 19.56; 21.64; 483.96 +1994; 7; 18; 199; 4.66; 11.32; 6.15; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1994; 7; 25; 206; 4.19; 13.18; 7.70; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1994; 8; 1; 213; 4.44; 15.62; 9.25; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1994; 8; 11; 223; -999.99; -999.99; -999.99; 22.40; 19.79; 16.88; 19.98; 12.98; 500.99 +1994; 8; 16; 228; 4.89; 21.39; 13.41; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1994; 8; 29; 241; 4.17; 22.92; 15.38; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1994; 9; 13; 256; 3.68; 28.48; 20.67; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 diff --git a/inst/stics/V11.0.0/example/sunflower.obs b/inst/stics/V11.0.0/example/sunflower.obs new file mode 100644 index 0000000..f1377c0 --- /dev/null +++ b/inst/stics/V11.0.0/example/sunflower.obs @@ -0,0 +1,17 @@ +ian;mo;jo;jul;lai(n);masec(n);mafruit;HR(1);HR(2);HR(3);HR(4);HR(5);resmes +1996; 4; 18; 109; -999.99; -999.99; -999.99; 43.06; 34.53; 44.87; 43.42; 27.29; 695.45 +1996; 6; 18; 170; -999.99; 1.73; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 6; 27; 179; -999.99; 4.18; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 6; 28; 180; 2.64; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 7; 3; 185; -999.99; -999.99; -999.99; 22.73; 23.03; 32.5; 34.67; 25.42; 547.77 +1996; 7; 9; 191; -999.99; 6.19; 0.11; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 7; 11; 193; 2.79; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 7; 16; 198; 2.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 7; 22; 204; -999.99; 8.65; 1.54; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 7; 25; 207; 2.33; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 7; 30; 212; -999.99; 8.63; 2.16; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 8; 5; 218; -999.99; 8.17; 2.43; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 8; 8; 221; 2.02; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 8; 12; 225; -999.99; 8.09; 2.79; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 9; 18; 262; -999.99; 9.86; 3.54; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1996; 9; 26; 270; -999.99; -999.99; -999.99; 31.18; 28.28; 33.14; 31.62; 22.82; 547.7 diff --git a/inst/stics/V11.0.0/example/timothy.obs b/inst/stics/V11.0.0/example/timothy.obs new file mode 100644 index 0000000..f16c379 --- /dev/null +++ b/inst/stics/V11.0.0/example/timothy.obs @@ -0,0 +1,13 @@ +ian;mo;jo;jul;TS(1);AZnit(1);AZamm(1);HR(1);masec(n);em_N2O +2001;5;23;143;11.3;30.9;39.2;5.7;-999.99;0.003317888 +2001;5;25;145;9.5;43.6;49.2;4.4;-999.99;0.001323364 +2001;5;30;150;14.4;8.8;39.3;15.9;-999.99;0.016709084 +2001;6;6;157;15.2;4.8;2.2;15.2;-999.99;0.00852642 +2001;6;12;163;15.6;0.9;3.6;13.3;-999.99;0.003495744 +2001;6;14;165;-999.99;-999.99;-999.99;-999.99;5.5;-999.99 +2001;6;19;170;21.3;46.3;50;16.2;-999.99;0.007016604 +2001;6;20;171;19.8;30.5;19.8;14.6;-999.99;0.004336248 +2001;6;27;178;21.4;17;10.6;13.5;-999.99;0.010004876 +2001;7;3;184;-999.99;19.3;3.9;-999.99;-999.99;0.003819256 +2001;7;9;190;17.8;3.8;1.6;13.9;-999.99;0.011436124 +2001;7;26;207;-999.99;-999.99;-999.99;-999.99;3.6;-999.99 diff --git a/inst/stics/V11.0.0/example/timothy_ini.xml b/inst/stics/V11.0.0/example/timothy_ini.xml new file mode 100644 index 0000000..a691107 --- /dev/null +++ b/inst/stics/V11.0.0/example/timothy_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + lev + 0.0000 + 50.0000 + + 0.0000 + + 30.0000 + 15.0000 + 0.0000 + 0.0000 + 0.0000 + + + + snu + + + + + + + + + + + + + + + 0.0000 + 0.0000 + 0.0000 + 0.0000 + 0.0000 + + + 10.0000 + 5.0000 + 5.0000 + 0.0000 + 0.0000 + + + 10.0000 + 5.0000 + 5.0000 + 0.0000 + 0.0000 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/timothy_tec.xml b/inst/stics/V11.0.0/example/timothy_tec.xml new file mode 100644 index 0000000..2934cc3 --- /dev/null +++ b/inst/stics/V11.0.0/example/timothy_tec.xml @@ -0,0 +1,388 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + 999 + 2.00000 + 100.00000 + 1 + + + + + + + + 1.00000 + + + 120.00000 + + + 0.11000 + + + + + + + + + + 143 + 100 + 1 + + + 170 + 100 + 1 + + + + + + 999 + straw+roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/tomate_ini.xml b/inst/stics/V11.0.0/example/tomate_ini.xml new file mode 100644 index 0000000..4be35c6 --- /dev/null +++ b/inst/stics/V11.0.0/example/tomate_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + snu + 0.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + + + + + + + + + + + + + + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/tomate_tec.xml b/inst/stics/V11.0.0/example/tomate_tec.xml new file mode 100644 index 0000000..7c44fb3 --- /dev/null +++ b/inst/stics/V11.0.0/example/tomate_tec.xml @@ -0,0 +1,650 @@ + + + + + + + + + + + + + + + 310 + 1 + 8.00 + 42.00 + 25.00 + 0.00 + 70.00 + + + + + + + + + + + + + 310 + 0.00 + 25.00 + + + + + 313 + 10.00000 + 3.33000 + 3 + + + + + + + + 0.95000 + + + 35.00000 + + + 0.00000 + + + + + + + + + + 313 + 48.60 + 2 + + + 354 + 3.60 + 2 + + + 356 + 3.60 + 2 + + + 358 + 5.20 + 2 + + + 361 + 3.10 + 2 + + + 363 + 2.70 + 2 + + + 365 + 12.30 + 2 + + + 368 + 9.10 + 2 + + + 370 + 8.30 + 2 + + + 372 + 5.40 + 2 + + + 375 + 0.70 + 2 + + + 378 + 0.20 + 2 + + + + + + 460 + roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/tomato.obs b/inst/stics/V11.0.0/example/tomato.obs new file mode 100644 index 0000000..c695d58 --- /dev/null +++ b/inst/stics/V11.0.0/example/tomato.obs @@ -0,0 +1,6 @@ +ian;mo;jo;jul;lai(n);masec(n);mafruit;QNplante +2000; 11; 9; 314; -999.99; 0.03; -999.99; -999.99 +2000; 12; 19; 354; -999.99; 0.974; 0.0722; 33.8 +2001; 1; 11; 11; -999.99; 3.442; 1.074; 107.38 +2001; 2; 16; 47; 2.26; -999.99; -999.99; -999.99 +2001; 3; 9; 68; -999.99; 6.908; 3.450; 167.58 diff --git a/inst/stics/V11.0.0/example/toursol.lai b/inst/stics/V11.0.0/example/toursol.lai new file mode 100644 index 0000000..43a259a --- /dev/null +++ b/inst/stics/V11.0.0/example/toursol.lai @@ -0,0 +1,126 @@ + +1 2.9572 +1 .0243 +1 628.5782 +1 .0045 +0 1600.0000 + .1 2 .1 + 1 119 .000 9.6 + 2 120 .000 18.5 + 3 121 .000 26.3 + 4 122 .000 32.9 + 5 123 .000 38.9 + 6 124 .000 45.7 + 7 125 .000 54.1 + 8 126 .000 63.8 + 9 127 .000 74.8 + 10 128 .000 84.8 + 11 129 .000 94.2 + 12 130 .000 103.9 + 13 131 .000 110.6 + 14 132 .000 115.4 + 15 133 .000 121.6 + 16 134 .000 126.5 + 17 135 .000 131.0 + 18 136 .000 140.1 + 19 137 .000 151.3 + 20 138 .000 163.3 + 21 139 .000 176.5 + 22 140 .000 184.4 + 23 141 .000 191.0 + 24 142 .000 196.8 + 25 143 .000 205.7 + 26 144 .000 218.6 + 27 145 .000 231.5 + 28 146 .000 244.6 + 29 147 .000 257.6 + 30 148 .000 271.0 + 31 149 .000 281.8 + 32 150 .000 293.7 + 33 151 .000 307.5 + 34 152 .000 318.1 + 35 153 .000 325.3 + 36 154 .000 331.6 + 37 155 .000 339.9 + 38 156 .000 352.2 + 39 157 .000 366.7 + 40 158 .000 382.3 + 41 159 .000 400.1 + 42 160 .002 416.2 + 43 161 .010 433.6 + 44 162 .022 451.3 + 45 163 .044 470.9 + 46 164 .075 488.5 + 47 165 .121 506.0 + 48 166 .184 522.3 + 49 167 .276 539.0 + 50 168 .418 557.4 + 51 169 .601 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2.236 1285.9 + 99 217 2.185 1301.1 +100 218 2.127 1317.2 +101 219 2.064 1333.5 +102 220 1.997 1349.6 +103 221 1.921 1366.7 +104 222 1.833 1384.8 +105 223 1.737 1402.9 +106 224 1.650 1418.3 +107 225 1.566 1432.1 +108 226 1.476 1446.0 +109 227 1.388 1458.9 +110 228 1.283 1473.3 +111 229 1.165 1488.6 +112 230 1.036 1504.0 +113 231 .893 1519.9 +114 232 .744 1535.5 +115 233 .579 1551.5 +116 234 .414 1566.4 +117 235 .240 1581.2 +118 236 .069 1594.7 +119 237 .000 1608.8 diff --git a/inst/stics/V11.0.0/example/toursol_ini.xml b/inst/stics/V11.0.0/example/toursol_ini.xml new file mode 100644 index 0000000..443b5bf --- /dev/null +++ b/inst/stics/V11.0.0/example/toursol_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + plt + 0.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + + + + + + + + + + + + + + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + 20.0 + 10.0 + 5.0 + 0.0 + 0.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/turmeric_ini.xml b/inst/stics/V11.0.0/example/turmeric_ini.xml new file mode 100644 index 0000000..3545815 --- /dev/null +++ b/inst/stics/V11.0.0/example/turmeric_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + snu + 0.0 + 0.0 + + 0.0 + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + snu + + + + + + + + + + + + + + + 22 + 20 + 30 + 30 + 25 + + + 40.0 + 00.0 + 60.0 + 140.0 + 120.0 + + + 0.0 + 0.0 + 0.0 + 0.0 + 0.0 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/turmeric_tec.xml b/inst/stics/V11.0.0/example/turmeric_tec.xml new file mode 100644 index 0000000..5a7407b --- /dev/null +++ b/inst/stics/V11.0.0/example/turmeric_tec.xml @@ -0,0 +1,471 @@ + + + + + + + + + + + + + + + + + + + + + + + + + 101 + 20 + 20 + + + + + 130 + 7.00000 + 9.00000 + 1 + + + + + + + + 1.0 + + + 120.00000 + + + 0.02000 + + + + + + + + + + 275 + 200.00 + 1 + + + 168 + 200.00 + 1 + + + + + + 365 + straw+roots + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/usms.xml b/inst/stics/V11.0.0/example/usms.xml new file mode 100644 index 0000000..060e4a2 --- /dev/null +++ b/inst/stics/V11.0.0/example/usms.xml @@ -0,0 +1,1155 @@ + + + + 286 + 650 + canne_ini.xml + solcanne + climcanj_sta.xml + climcanj.1998 + climcanj.1999 + 2 + 1 + 0 + + proto_sugarcane_plt.xml + canne_tec.xml + null + SugarCane.obs + + + null + null + null + null + + + + 91 + 250 + patate_ini.xml + solpatate + climpdtj_sta.xml + climpdtj.1997 + climpdtj.1997 + 1 + 1 + 0 + + proto_potato_plt.xml + patate_tec.xml + null + potato.obs + + + null + null + null + null + + + + 30 + 300 + banane_ini.xml + solbanane + climbanj_sta.xml + climbanj.1996 + climbanj.1996 + 1 + 1 + 0 + + proto_banana_plt.xml + banane_tec.xml + null + banana.obs + + + null + null + null + null + + + + 112 + 360 + sorgho_ini.xml + solsorgho + climsorj_sta.xml + climsorj.1996 + climsorj.1996 + 1 + 1 + 0 + + proto_sorghum_plt.xml + sorgho_tec.xml + sorgho.lai + sorghum.obs + + + null + null + null + null + + + + 292 + 589 + barley_ini.xml + soil_barley + barley_sta.xml + climbarleyj.2001 + climbarleyj.2002 + 2 + 1 + 0 + + proto_barley_plt.xml + barley_tec.xml + null + barley.obs + + + null + null + null + null + + + + 230 + 405 + radish_ini.xml + soil_radish + radish_sta.xml + climradishj.1992 + climradishj.1993 + 2 + 1 + 0 + + proto_radish_plt.xml + radish_tec.xml + null + radish.obs + + + null + null + null + null + + + + 269 + 561 + winterbarley_ini.xml + soil_winterbarley + winterbarley_sta.xml + climwinterbarleyj.1997 + climwinterbarley.1998 + 2 + 1 + 0 + + proto_winterbarley_plt.xml + winterbarley_tec.xml + null + winterbarley.obs + + + null + null + null + null + + + + 1 + 335 + bettera_ini.xml + solbett + climbetj_sta.xml + climbetj.1994 + climbetj.1994 + 1 + 1 + 0 + + sugarbeet_plt.xml + bettera_tec.xml + bettera.lai + sugarbeet.obs + + + null + null + null + null + + + + 290 + 700 + ble_ini.xml + solble + climblej_sta.xml + climblej.1994 + climblej.1995 + 2 + 1 + 0 + + wheat_plt.xml + Ble_tec.xml + ble.lai + wheat.obs + + + null + null + null + null + + + + 112 + 360 + mais_ini.xml + solmais + climaisj_sta.xml + climaisj.1996 + climaisj.1996 + 1 + 1 + 0 + + corn_plt.xml + Mais_tec.xml + mais.lai + maize.obs + + + null + null + null + null + + + + 180 + 280 + soja_ini.xml + solsoja + climsojj_sta.xml + climsojj.1990 + climsojj.1990 + 1 + 1 + 0 + + proto_soybean_plt.xml + Soja_tec.xml + soja.lai + soybean.obs + + + null + null + null + null + + + + 12 + 74 + salade_ini.xml + solsalade + climsalj_sta.xml + climsalj.2000 + climsalj.2000 + 1 + 1 + 0 + + proto_lettuce_plt.xml + Salade_tec.xml + salade.lai + lettuce.obs + + + null + null + null + null + + + + 308 + 437 + tomate_ini.xml + soltomate + climtomj_sta.xml + climtomj.2000 + climtomj.2001 + 2 + 1 + 0 + + proto_tomato_plt.xml + tomate_tec.xml + null + tomato.obs + + + null + null + null + null + + + + 243 + 622 + bledur_ini.xml + solbldur + climbldj_sta.xml + climbldj.2000 + climbldj.2001 + 2 + 1 + 0 + + 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+ + null + null + null + null + + + + 1 + 365 + Miscanthus_ini.xml + Miscanthus + Miscanthus_sta.xml + Miscanthus.2014 + Miscanthus.2014 + 1 + 1 + 0 + + Miscanthus_plt.xml + Miscanthus_2014_tec.xml + null + Miscanthus_2014.obs + + + null + null + null + null + + + + 1 + 365 + Miscanthus_ini.xml + Miscanthus + Miscanthus_sta.xml + Miscanthus.2015 + Miscanthus.2015 + 1 + 1 + 0 + + Miscanthus_plt.xml + Miscanthus_2015_tec.xml + null + Miscanthus_2015.obs + + + null + null + null + null + + + diff --git a/inst/stics/V11.0.0/example/var.mod b/inst/stics/V11.0.0/example/var.mod new file mode 100644 index 0000000..9a91098 --- /dev/null +++ b/inst/stics/V11.0.0/example/var.mod @@ -0,0 +1,69 @@ +lai(n) +masec(n) +mafruit +HR(1) +HR(2) +HR(3) +HR(4) +HR(5) +resmes +drain +esol +et +zrac +tcult +AZnit(1) +AZnit(2) +AZnit(3) +AZnit(4) +AZnit(5) +Qles +QNplante +azomes +chargefruit +AZamm(1) +AZamm(2) +AZamm(3) +AZamm(4) +AZamm(5) +CNgrain +concNO3les +drat +fapar +hauteur +Hmax +humidite +LRACH(1) +LRACH(2) +LRACH(3) +LRACH(4) +LRACH(5) +mafrais +pdsfruitfrais +Qdrain +rnet +QNgrain +psibase +mabois +H2Orec +mafeuiljaune +mafeuilverte +humirac_mean +tempeff +deltai(n) +ulai(n) +tustress +efdensite +densite +exolai +dltams(n) +remobilj +exofac +exobiom +inn +innlai +inns +turfac +swfac +Qminh +Qminr diff --git a/inst/stics/V11.0.0/example/vigne.lai b/inst/stics/V11.0.0/example/vigne.lai new file mode 100644 index 0000000..9f0b86a --- /dev/null +++ b/inst/stics/V11.0.0/example/vigne.lai @@ -0,0 +1,257 @@ + +0 2.0500 +1 .0164 +0 419.0000 +0 .0100 +0 2110.0000 + .0 4 .2 + 1 475 .007 75.5 + 2 476 .008 78.8 + 3 477 .009 85.1 + 4 478 .009 90.0 + 5 479 .010 96.4 + 6 480 .012 103.0 + 7 481 .013 109.8 + 8 482 .014 115.6 + 9 483 .015 120.6 + 10 484 .017 127.0 + 11 485 .018 130.5 + 12 486 .020 136.9 + 13 487 .021 140.9 + 14 488 .023 144.9 + 15 489 .024 147.2 + 16 490 .026 153.6 + 17 491 .028 157.7 + 18 492 .028 158.2 + 19 493 .028 158.6 + 20 494 .029 160.2 + 21 495 .030 162.3 + 22 496 .032 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0000000..42c589f --- /dev/null +++ b/inst/stics/V11.0.0/example/vigne_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + dor + 0.0000 + 0.0000 + 115.0000 + + + 0.0044 + 0.0400 + 0.0120 + 0.0066 + 0.0022 + + + + + + + + + + + + + + + + + + + 9.4000 + 9.4000 + 5.9000 + 3.7000 + 3.7000 + + + 3.0000 + 2.0000 + 2.0000 + 1.0000 + 1.0000 + + + 0.0000 + 0.0000 + 0.0000 + 0.0000 + 0.0000 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/vigne_tec.xml b/inst/stics/V11.0.0/example/vigne_tec.xml new file mode 100644 index 0000000..e167b9f --- /dev/null +++ b/inst/stics/V11.0.0/example/vigne_tec.xml @@ -0,0 +1,385 @@ + + + + + + + + + + + + + + + 385 + 8 + 1.46 + 43.00 + 60.00 + 0.00 + 25.00 + + + + + + + + + + + + + 436 + 10.00 + 10.00 + + + 536 + 10.00 + 10.00 + + + 650 + 10.00 + 10.00 + + + 385 + 0.00 + 0.00 + + + + + 1 + 1.00000 + 0.36360 + 1 + + + + + + + + 1.00000 + + + 200.00000 + + + 0.00000 + + + + + + + + + + + + + 640 + prunings + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inst/stics/V11.0.0/example/vine.obs b/inst/stics/V11.0.0/example/vine.obs new file mode 100644 index 0000000..32f77b6 --- /dev/null +++ b/inst/stics/V11.0.0/example/vine.obs @@ -0,0 +1,32 @@ +ian;mo;jo;jul;lai(n);masec(n);mafruit;HR(1);HR(2);HR(3);resmes;QNplante;chargefruit;CNgrain;hauteur;Hmax;humidite;mafrais;pdsfruitfrais;rnet +2004; 3; 1; 61; -999.99; -999.99; -999.99; 13.35; 17.14; 15.50; 156.44; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +2004; 3; 8; 68; -999.99; -999.99; -999.99; 13.35; 16.93; 15.33; 154.87; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +2004; 4; 8; 99; -999.99; -999.99; -999.99; 9.47; 14.94; 14.73; 138.33; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +2004; 4; 27; 118; -999.99; -999.99; -999.99; 9.77; 14.47; 14.22; 134.67; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +2004; 5; 4; 125; 0.03; 0.02; 0.00; -999.99; -999.99; -999.99; -999.99; 0.92; -999.99; 0.00; -999.99; -999.99; -999.99; 0.17; 0.01; -999.99 +2004; 5; 11; 132; -999.99; -999.99; -999.99; 11.30; 16.10; 14.31; 144.14; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +2004; 6; 3; 155; -999.99; -999.99; -999.99; 9.30; 16.04; 14.69; 142.51; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +2004; 6; 11; 163; -999.99; -999.99; -999.99; 7.93; 14.71; 14.12; 132.58; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +2004; 6; 15; 167; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -0.31; -999.99; -999.99; -999.99; -999.99 +2004; 6; 17; 169; 1.83; 1.45; 0.03; -999.99; -999.99; -999.99; -999.99; 27.80; -999.99; 0.49; -999.99; -999.99; -999.99; 7.32; 0.34; -999.99 +2004; 6; 21; 173; -999.99; -999.99; -999.99; 6.98; 13.26; 13.10; 120.80; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +2004; 6; 30; 182; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -0.40; -999.99; -999.99; -999.99; -999.99 +2004; 7; 6; 188; -999.99; -999.99; -999.99; 5.82; 11.89; 11.38; 106.21; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +2004; 7; 13; 195; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -0.46; -999.99; -999.99; -999.99; -999.99 +2004; 7; 15; 197; -999.99; -999.99; -999.99; 5.31; 11.36; 10.73; 100.46; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +2004; 7; 26; 208; -999.99; -999.99; -999.99; 4.90; 10.93; 10.34; 96.44; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +2004; 7; 27; 209; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -0.59; -999.99; -999.99; -999.99; -999.99 +2004; 8; 3; 216; 1.77; 1.90; 0.26; -999.99; -999.99; -999.99; -999.99; 21.61; -999.99; 2.17; 1.50; -999.99; -999.99; 7.79; 1.95; -999.99 +2004; 8; 9; 222; -999.99; -999.99; -999.99; 12.26; 15.04; 11.47; 129.12; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +2004; 8; 16; 229; -999.99; -999.99; -999.99; 9.84; 13.29; 10.78; 115.37; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +2004; 8; 23; 236; -999.99; -999.99; -999.99; 12.05; 15.46; 12.29; 134.02; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +2004; 8; 26; 239; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -0.39; -999.99; -999.99; -999.99; -999.99 +2004; 9; 13; 257; -999.99; -999.99; -999.99; 8.24; 11.45; 10.25; 103.09; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +2004; 9; 14; 258; 2.32; 3.91; 1.36; -999.99; -999.99; -999.99; -999.99; 35.15; 303.74; 4.79; 1.50; -999.99; -999.99; 13.40; 5.57; 0.77 +2004; 9; 27; 271; -999.99; -999.99; -999.99; 7.01; 11.21; 9.79; 98.40; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +2004; 10; 12; 286; -999.99; -999.99; -999.99; 6.27; 10.82; 9.76; 95.51; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +2004; 10; 25; 299; -999.99; -999.99; -999.99; 9.64; 10.92; 9.96; 101.68; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +2004; 11; 5; 310; -999.99; -999.99; -999.99; 14.20; 17.30; 15.02; 156.30; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +2004; 11; 26; 331; -999.99; -999.99; -999.99; 11.10; 15.67; 13.89; 140.27; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +2004; 12; 10; 345; 0.00; -999.99; 0.00; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 1.85; -999.99; 0.00; -999.99 +2004; 12; 27; 362; 0.00; -999.99; -999.99; 14.54; 16.92; 14.14; 151.55; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 diff --git a/inst/stics/V11.0.0/example/wheat.obs b/inst/stics/V11.0.0/example/wheat.obs new file mode 100644 index 0000000..7f4620b --- /dev/null +++ b/inst/stics/V11.0.0/example/wheat.obs @@ -0,0 +1,21 @@ +ian;mo;jo;jul;lai(n);masec(n);HR(1);HR(2);HR(3);resmes;AZnit(1);AZnit(2);AZnit(3);QNplante +1995; 1; 30; 30; 0.29; 0.25; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 9.24 +1995; 2; 3; 34; -999.99; -999.99; 21.1; 18.8; 12.4; 133.26; 3.1; 2.9; 4.0; -999.99 +1995; 2; 7; 38; 0.37; 0.31; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 10.85 +1995; 2; 16; 47; 0.40; 0.32; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 12.61 +1995; 2; 24; 55; 0.45; 0.40; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 13.32 +1995; 3; 6; 65; 0.44; 0.38; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 16.65 +1995; 3; 16; 75; 0.60; 0.59; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 24.59 +1995; 3; 23; 82; 0.85; 0.87; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 38.86 +1995; 4; 3; 93; 1.47; 1.28; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 60.99 +1995; 4; 11; 101; 2.37; 2.68; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 98.98 +1995; 4; 18; 108; 2.65; 3.70; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 103.36 +1995; 4; 26; 116; 4.55; 4.67; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 141.99 +1995; 5; 2; 122; 4.41; 5.77; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 170.03 +1995; 5; 5; 125; -999.99; 6.01; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1995; 5; 9; 129; 5.20; 7.51; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 188.57 +1995; 5; 12; 132; -999.99; 9.73; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1995; 5; 15; 135; 5.98; 9.87; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 216.06 +1995; 5; 19; 139; -999.99; 11.08; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1995; 5; 29; 149; -999.99; 14.08; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 258.38 +1995; 7; 17; 198; -999.99; 21.91; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 258.45 diff --git a/inst/stics/V11.0.0/example/winterbarley.obs b/inst/stics/V11.0.0/example/winterbarley.obs new file mode 100644 index 0000000..f3a8355 --- /dev/null +++ b/inst/stics/V11.0.0/example/winterbarley.obs @@ -0,0 +1,9 @@ +ian;mo;jo;jul;masec(n);mafruit;HR(1);HR(2);HR(3);HR(4);resmes;AZnit(1);AZnit(2);AZnit(3);AZnit(4);QNplante;azomes;inn;chargefruit;AZamm(1);AZamm(2);AZamm(3);AZamm(4);CNgrain +1997; 9; 25; 268; -999.99; -999.99; 17.4; 22.9; 19.8; 13.9; 237; 48.9; 18.2; 8.0; 5.6; -999.99; 75.1; -999.99; -999.99; 2.2; 3.4; 1.2; 1.0; -999.99 +1997; 12; 16; 350; -999.99; -999.99; 22.9; 20.5; 19.2; 17.1; 247; 7.6; 19.4; 26.7; 10.0; -999.99; 53.8; -999.99; -999.99; 2.7; 1.4; 1.0; 1.0; -999.99 +1998; 1; 27; 27; 0.646; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 21; -999.99; 0.48; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1998; 1; 28; 28; -999.99; -999.99; 23.8; 21.1; 22.2; 17.0; 265; 13.9; 2.6; 2.9; 17.8; -999.99; 19.5; -999.99; -999.99; 3.1; 1.7; 0.4; 0.2; -999.99 +1998; 3; 18; 77; 1.32; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 64; -999.99; 0.96; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1998; 5; 14; 134; 7.55; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 119; -999.99; 0.64; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99 +1998; 6; 30; 181; 12.41; 7.20; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; -999.99; 123; -999.99; -999.99; 20973; -999.99; -999.99; -999.99; -999.99; 1.29 +1998; 7; 15; 196; -999.99; -999.99; 18.3; 11.6; 13.3; 12.6; 171; 9.1; 2.5; 2.0; 7.6; -999.99; 13.5; -999.99; -999.99; 8.0; 1.6; 0.0; 0.0; -999.99 diff --git a/inst/stics/V11.0.0/example/winterbarley_ini.xml b/inst/stics/V11.0.0/example/winterbarley_ini.xml new file mode 100644 index 0000000..88a1ce1 --- /dev/null +++ b/inst/stics/V11.0.0/example/winterbarley_ini.xml @@ -0,0 +1,86 @@ + + + 1 + + snu + 0.0000 + 0.0000 + 0.0000 + + + 0.0000 + 0.0000 + 0.0000 + 0.0000 + 0.0000 + + + + + + + + + + + + + + + + + + + 17.4000 + 22.9000 + 19.8000 + 13.9000 + 0.0000 + + + 52.7000 + 19.3000 + 8.5000 + 6.0000 + 0.0000 + + + 0.0000 + 0.0000 + 0.0000 + 0.0000 + 0.0000 + + + + 0.0 + 0.0 + 0.0 + 0.0 + + + diff --git a/inst/stics/V11.0.0/example/winterbarley_sta.xml b/inst/stics/V11.0.0/example/winterbarley_sta.xml new file mode 100644 index 0000000..0a1def1 --- /dev/null +++ b/inst/stics/V11.0.0/example/winterbarley_sta.xml @@ -0,0 +1,86 @@ + + + + 2.50000 + 0.00000 + 0.02 + 49.50000 + 1000.00000 + 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a/inst/stics/V11.0.0/plant/vine_CHARDOB_plt.xml b/inst/stics/V11.0.0/plant/vine_CHARDOB_plt.xml new file mode 100644 index 0000000..8d6c912 --- /dev/null +++ b/inst/stics/V11.0.0/plant/vine_CHARDOB_plt.xml @@ -0,0 +1,572 @@ + + + + vig + + + + 1.20000 + + + 10.00000 + 37.00000 + + + + + + + 10.00000 + + + + + + 25.00000 + 0.00000 + 10.00000 + 37.00000 + 100.00000 + + + + no + 1.0 + 0.0 + + + + + + + 37.00000 + 25.00000 + 1.20000 + 1.04000 + 2.25000 + 0.07300 + 0.00000 + + + 100.000 + 0.00000 + 0.00000 + + + + + + 1 + + + + + 0.00000 + lax + 0.00000 + 0.30000 + 0.02 + + + + + + -20.00000 + -1.50000 + + + + + + + 0.75000 + 0.50000 + 0.70000 + 0.70000 + 0.92500 + 0.00016 + + + + + 0.00180 + 50.000 + 0.00580 + 25000.000 + 3.30000 + 0.44000 + 1.60000 + 0.30000 + -0.49000 + 1.00000 + 1.00000 + 0.44000 + + + + + + + 00 + -99 + 09 + -99 + -99 + -99 + 65 + -99 + -99 + 85 + -99 + 99 + 01 + + + + + + 25 + 926.6 + 304.9 + 51 + 95 + 101.16 + + 6576.7 + + + -999 + -999 + -999 + + + + 0 + 1 + 0.3 + 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a/inst/stics/V11.0.0/plant/vine_MERLOT_plt.xml b/inst/stics/V11.0.0/plant/vine_MERLOT_plt.xml new file mode 100644 index 0000000..ac53eca --- /dev/null +++ b/inst/stics/V11.0.0/plant/vine_MERLOT_plt.xml @@ -0,0 +1,572 @@ + + + + vig + + + + 1.20000 + + + 10.00000 + 37.00000 + + + + + + + 10.00000 + + + + + + 25.00000 + 0.00000 + 10.00000 + 37.00000 + 100.00000 + + + + no + 1.0 + 0.0 + + + + + + + 37.00000 + 25.00000 + 1.20000 + 1.04000 + 2.25000 + 0.07300 + 0.00000 + + + 100.000 + 0.00000 + 0.00000 + + + + + + 1 + + + + + 0.00000 + lax + 0.00000 + 0.30000 + 0.02 + + + + + + -20.00000 + -1.50000 + + + + + + + 0.75000 + 0.50000 + 0.70000 + 0.70000 + 0.92500 + 0.00016 + + + + + 0.00180 + 50.000 + 0.00580 + 25000.000 + 3.30000 + 0.44000 + 1.60000 + 0.30000 + -0.49000 + 1.00000 + 1.00000 + 0.44000 + + + + + + + 00 + -99 + 09 + -99 + -99 + -99 + 65 + -99 + -99 + 85 + -99 + 99 + 01 + + + + + + 25 + 999.7 + 347.7 + 50 + 96 + 105.67 + + 9145.4 + + + -999 + -999 + -999 + + + + 0 + 1 + 0.5 + 2.5 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a/inst/stics/V11.0.0/plant/vine_PINOTB_plt.xml b/inst/stics/V11.0.0/plant/vine_PINOTB_plt.xml new file mode 100644 index 0000000..e84864e --- /dev/null +++ b/inst/stics/V11.0.0/plant/vine_PINOTB_plt.xml @@ -0,0 +1,572 @@ + + + + vig + + + + 1.20000 + + + 10.00000 + 37.00000 + + + + + + + 10.00000 + + + + + + 25.00000 + 0.00000 + 10.00000 + 37.00000 + 100.00000 + + + + no + 1.0 + 0.0 + + + + + + + 37.00000 + 25.00000 + 1.20000 + 1.04000 + 2.25000 + 0.07300 + 0.00000 + + + 100.000 + 0.00000 + 0.00000 + + + + + + 1 + + + + + 0.00000 + lax + 0.00000 + 0.30000 + 0.02 + + + + + + -20.00000 + -1.50000 + + + + + + + 0.75000 + 0.50000 + 0.70000 + 0.70000 + 0.92500 + 0.00016 + + + + + 0.00180 + 50.000 + 0.00580 + 25000.000 + 3.30000 + 0.44000 + 1.60000 + 0.30000 + -0.49000 + 1.00000 + 1.00000 + 0.44000 + + + + + + + 00 + -99 + 09 + -99 + -99 + -99 + 65 + -99 + -99 + 85 + -99 + 99 + 01 + + + + + + 25 + 941.7 + 319.2 + 53 + 93 + 103 + + 7468.9 + + + -999 + -999 + -999 + + + + 0 + 1 + 0.3 + 2.5 + 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b/inst/stics/V11.0.0/plant/wheat_plt.xml new file mode 100644 index 0000000..e387dc6 --- /dev/null +++ b/inst/stics/V11.0.0/plant/wheat_plt.xml @@ -0,0 +1,1307 @@ + + + + ble + + + + 1.20000 + + + 0.00000 + 28 + + + + + + + 0.0 + + + + + + 120 + 0.30400 + 0.0 + 40.0 + 100.00000 + + + + no + 1.0 + 0.0 + + + + + + + 40.00000 + 17.00000 + 2.2 + 4.25 + 4.25 + 0.2 + 0.00000 + + + 180 + 0.10000 + 0.00000 + + + + + + 0.745 + + + + + 1 + sen + 0.5 + 0.30000 + 0.02 + + + + + + -25.00000 + -4.00000 + + + + + + + 0.90000 + 0.15000 + 0.60000 + 0.70000 + 0.40 + 0.00500 + + + + + 0.00180 + 50.000 + 0.05 + 25000.000 + 5.35 + 0.44 + 1.54 + 0.36000 + -0.50 + 0.03 + 1.20 + 0.44000 + + + + + + + 00 + 05 + 09 + 35 + 55 + 85 + 65 + 71 + -99 + 75 + 89 + 99 + -99 + + + + + + 275 + 375 + 837 + 0 + 700 + 55 + + -999 + + + 0 + 6.3 + 20 + + + + -0.6 + 7.00000 + 0.00000 + 1.2 + 0.70 + 200 + + -999 + -999 + -999 + 0.00047 + 0.17 + 0.50 + + + + + 0.50 + -999 + + + + 0.0 + 12.0 + + + 350 + 0.50 + + + 0.03970 + 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16aebe0..d88766b 100644 --- a/tests/testthat/test-estim_param.R +++ b/tests/testthat/test-estim_param.R @@ -4,16 +4,29 @@ library(SticsRFiles) library(CroptimizR) library(dplyr) -stics_version <- "V10.0" -javastics_path <- file.path(system.file("stics", package = "SticsRTests"), stics_version) -data_dir <- file.path(SticsRFiles::download_data(example_dirs = "study_case_1", stics_version = stics_version)) +stics_version <- SticsRFiles::get_stics_versions_compat()$latest_version + +javastics_path <- file.path( + system.file("stics", package = "SticsRTests"), + stics_version +) + +if (!Sys.info()[['sysname']] == 'Windows') + system(paste("chmod +x", file.path(javastics_path, "bin", "stics_modulo"))) + +data_dir <- file.path(SticsRFiles::download_data( + example_dirs = "study_case_1", + stics_version = stics_version +)) javastics_workspace_path <- file.path(data_dir, "XmlFiles") stics_inputs_path <- file.path(data_dir, "TxtFiles") dir.create(stics_inputs_path, showWarnings = FALSE) SticsRFiles::gen_usms_xml2txt( - javastics = javastics_path, workspace = javastics_workspace_path, - out_dir = stics_inputs_path, verbose = TRUE + javastics = javastics_path, + workspace = javastics_workspace_path, + out_dir = stics_inputs_path, + verbose = TRUE ) sit_name <- "bo96iN+" # can be a vector of situation names if you want to consider several, e.g. c("bo96iN+","bou00t1") @@ -27,7 +40,6 @@ test_that("Test filter_obs", { }) - # Download and transform Vignette simple_case for different tests # --------------------------------------------------------------- @@ -43,17 +55,26 @@ download.file( ## set the parameters for a run in auto_test mode xfun::gsub_file( file = simple_case_rmd, - pattern = "params$eval_auto_test", replacement = "TRUE", fixed = TRUE + pattern = "params$eval_auto_test", + replacement = "TRUE", + fixed = TRUE ) xfun::gsub_file( file = simple_case_rmd, - pattern = "params$eval_auto_vignette", replacement = "FALSE", fixed = TRUE + pattern = "params$eval_auto_vignette", + replacement = "FALSE", + fixed = TRUE ) xfun::gsub_file( file = simple_case_rmd, - pattern = "params$eval_manual_vignette", replacement = "FALSE", fixed = TRUE + pattern = "params$eval_manual_vignette", + replacement = "FALSE", + fixed = TRUE +) +javastics_path <- file.path( + system.file("stics", package = "SticsRTests"), + stics_version ) -javastics_path <- file.path(system.file("stics", package = "SticsRTests"), stics_version) xfun::gsub_file( file = simple_case_rmd, pattern = "params$path_to_JavaStics", @@ -61,15 +82,22 @@ xfun::gsub_file( fixed = TRUE ) +xfun::gsub_file( + file = simple_case_rmd, + pattern = 'stics_version = "V9.0"', + replacement = paste0("stics_version = \"", stics_version, "\""), + fixed = TRUE +) + ## generate the R script simple_case_r <- file.path(tmpdir, "Parameter_estimation_simple_case.R") knitr::purl( input = simple_case_rmd, - output = simple_case_r, documentation = 2 + output = simple_case_r, + documentation = 2 ) - # Test Vignette simple_case # ------------------------- @@ -89,18 +117,23 @@ xfun::gsub_file( ## change the options of the parameter estimation method xfun::gsub_file( file = simple_case_r_tmp, - pattern = "optim_options$nb_rep <- 7", replacement = "optim_options$nb_rep <- 2", fixed = TRUE + pattern = "optim_options$nb_rep <- 7", + replacement = "optim_options$nb_rep <- 2", + fixed = TRUE ) xfun::gsub_file( file = simple_case_r_tmp, - pattern = "optim_options$maxeval <- 500", replacement = "optim_options$maxeval <- 4", fixed = TRUE + pattern = "optim_options$maxeval <- 500", + replacement = "optim_options$maxeval <- 4", + fixed = TRUE ) ## adapt the version of the Stics input files to the Stics version used xfun::gsub_file( file = simple_case_r_tmp, pattern = "stics_version = \"V9.0\"", - replacement = paste0("stics_version = \"", stics_version, "\""), fixed = TRUE + replacement = paste0("stics_version = \"", stics_version, "\""), + fixed = TRUE ) @@ -113,7 +146,11 @@ nlo_new <- lapply(res$nlo, function(x) { x$call <- NULL x }) # remove "call" since it may change between code versions ... -load(system.file(file.path("extdata", "ResSimpleCase2rep4it"), "optim_results.Rdata", package = "CroptimizR")) +load(system.file( + file.path("extdata", "ResSimpleCase2rep4it"), + "optim_results.Rdata", + package = "CroptimizR" +)) nlo <- lapply(nlo, function(x) { x$call <- NULL x @@ -122,26 +159,34 @@ nlo <- lapply(nlo, function(x) { test_that("Test Vignette simple_case", { expect_equal(nlo_new[[1]]$x0, c(0.0023862966, 118.3769), tolerance = 1e-7) expect_equal(nlo_new[[2]]$x0, c(0.0008777006, 290.9086), tolerance = 1e-7) - expect_equal(sapply(nlo_new, "[[", "solution"), sapply(nlo, "[[", "solution"), tolerance = 1e-4) - expect_equal(sapply(nlo_new, "[[", "objective"), sapply(nlo, "[[", "objective"), tolerance = 1e-4) + expect_equal( + sapply(nlo_new, "[[", "solution"), + sapply(nlo, "[[", "solution"), + tolerance = 1e-4 + ) + expect_equal( + sapply(nlo_new, "[[", "objective"), + sapply(nlo, "[[", "objective"), + tolerance = 1e-4 + ) expect_true(file.exists(file.path(data_dir, "EstimatedVSinit.pdf"))) expect_true(file.exists(file.path(data_dir, "ValuesVSit.pdf"))) expect_true(file.exists(file.path(data_dir, "ValuesVSit_2D.pdf"))) }) - # Test optimization of an unexisting parameter # -------------------------------------------- # TO DO - - # Test Vignette specific and varietal # ----------------------------------- tmpdir <- normalizePath(tempdir(), winslash = "/", mustWork = FALSE) -vignette_rmd <- file.path(tmpdir, "Parameter_estimation_Specific_and_Varietal.Rmd") +vignette_rmd <- file.path( + tmpdir, + "Parameter_estimation_Specific_and_Varietal.Rmd" +) download.file( "https://raw.github.com/SticsRPacks/CroptimizR/main/vignettes/Parameter_estimation_Specific_and_Varietal.Rmd", vignette_rmd @@ -150,17 +195,26 @@ download.file( ## set the parameters for a run in auto_test mode xfun::gsub_file( file = vignette_rmd, - pattern = "params$eval_auto_test", replacement = "TRUE", fixed = TRUE + pattern = "params$eval_auto_test", + replacement = "TRUE", + fixed = TRUE ) xfun::gsub_file( file = vignette_rmd, - pattern = "params$eval_auto_vignette", replacement = "FALSE", fixed = TRUE + pattern = "params$eval_auto_vignette", + replacement = "FALSE", + fixed = TRUE ) xfun::gsub_file( file = vignette_rmd, - pattern = "params$eval_manual_vignette", replacement = "FALSE", fixed = TRUE + pattern = "params$eval_manual_vignette", + replacement = "FALSE", + fixed = TRUE +) +javastics_path <- file.path( + system.file("stics", package = "SticsRTests"), + stics_version ) -javastics_path <- file.path(system.file("stics", package = "SticsRTests"), stics_version) xfun::gsub_file( file = vignette_rmd, pattern = "params$path_to_JavaStics", @@ -171,7 +225,6 @@ xfun::gsub_file( ## Define initial values as those used for computing the reference results ## (random sampling may lead to different values on different platforms even with the same seed) - xfun::gsub_file( file = vignette_rmd, pattern = "ub = 0.0025", @@ -190,11 +243,15 @@ xfun::gsub_file( ## change the options of the parameter estimation method xfun::gsub_file( file = vignette_rmd, - pattern = "optim_options$nb_rep <- 7", replacement = "optim_options$nb_rep <- 2", fixed = TRUE + pattern = "optim_options$nb_rep <- 7", + replacement = "optim_options$nb_rep <- 2", + fixed = TRUE ) xfun::gsub_file( file = vignette_rmd, - pattern = "optim_options$maxeval <- 1000", replacement = "optim_options$maxeval <- 4", fixed = TRUE + pattern = "optim_options$maxeval <- 1000", + replacement = "optim_options$maxeval <- 4", + fixed = TRUE ) @@ -202,14 +259,16 @@ xfun::gsub_file( xfun::gsub_file( file = vignette_rmd, pattern = "stics_version = \"V9.0\"", - replacement = paste0("stics_version = \"", stics_version, "\""), fixed = TRUE + replacement = paste0("stics_version = \"", stics_version, "\""), + fixed = TRUE ) ## Fixing cores number for CI context on Github if (Sys.getenv("CI") != "") { xfun::gsub_file( file = vignette_rmd, - "parallel = TRUE", "parallel = TRUE, cores = 2", + "parallel = TRUE", + "parallel = TRUE, cores = 2", fixed = TRUE ) } @@ -218,7 +277,8 @@ if (Sys.getenv("CI") != "") { ## generate the R script knitr::purl( input = vignette_rmd, - output = file.path(tmpdir, "Parameter_estimation_Specific_and_Varietal.R"), documentation = 2 + output = file.path(tmpdir, "Parameter_estimation_Specific_and_Varietal.R"), + documentation = 2 ) ## run it @@ -230,25 +290,43 @@ nlo_new <- lapply(res$nlo, function(x) { x$call <- NULL x }) # remove "call" since it may change between code versions ... -load(system.file(file.path("extdata", "ResSpecVar_2rep4it", stics_version), "optim_results.Rdata", package = "CroptimizR")) +load(system.file( + file.path("extdata", "ResSpecVar_2rep4it", stics_version), + "optim_results.Rdata", + package = "CroptimizR" +)) nlo <- lapply(res$nlo, function(x) { x$call <- NULL x }) # remove "call" since it may change between code versions ... test_that("Test Vignette specific and varietal", { - expect_equal(nlo_new[[1]]$x0, c(0.001386297, 293.3769, 299.3398), tolerance = 1e-7) - expect_equal(nlo_new[[2]]$x0, c(0.001877701, 115.9086, 162.9456), tolerance = 1e-7) - expect_equal(sapply(nlo_new, "[[", "solution"), sapply(nlo, "[[", "solution"), tolerance = 1e-4) - expect_equal(sapply(nlo_new, "[[", "objective"), sapply(nlo, "[[", "objective"), tolerance = 1e-4) + expect_equal( + nlo_new[[1]]$x0, + c(0.001386297, 293.3769, 299.3398), + tolerance = 1e-7 + ) + expect_equal( + nlo_new[[2]]$x0, + c(0.001877701, 115.9086, 162.9456), + tolerance = 1e-7 + ) + expect_equal( + sapply(nlo_new, "[[", "solution"), + sapply(nlo, "[[", "solution"), + tolerance = 1e-4 + ) + expect_equal( + sapply(nlo_new, "[[", "objective"), + sapply(nlo, "[[", "objective"), + tolerance = 1e-4 + ) expect_true(file.exists(file.path(data_dir, "EstimatedVSinit.pdf"))) expect_true(file.exists(file.path(data_dir, "ValuesVSit.pdf"))) expect_true(file.exists(file.path(data_dir, "ValuesVSit_2D.pdf"))) }) - - # # Test that model crash end with proper error message # # --------------------------------------------------- # @@ -293,7 +371,6 @@ test_that("Test Vignette specific and varietal", { # "Error") # }) - # Test var argument and init values are taken into account # -------------------------------------------------------------- @@ -302,21 +379,37 @@ test_that("Test Vignette specific and varietal", { # and try to retrieve the parameter value used to create the synthetic observation. # level_info is also tested here ... - test_that("Test var argument and init values are taken into account", { - javastics_path <- file.path(system.file("stics", package = "SticsRTests"), stics_version) - data_dir <- file.path(SticsRFiles::download_data(example_dirs = "study_case_1", stics_version = stics_version)) + javastics_path <- file.path( + system.file("stics", package = "SticsRTests"), + stics_version + ) + data_dir <- file.path(SticsRFiles::download_data( + example_dirs = "study_case_1", + stics_version = stics_version + )) javastics_workspace_path <- file.path(data_dir, "XmlFiles") stics_inputs_path <- file.path(data_dir, "TxtFiles") dir.create(stics_inputs_path, showWarnings = FALSE) SticsRFiles::gen_usms_xml2txt( - javastics = javastics_path, workspace = javastics_workspace_path, - out_dir = stics_inputs_path, verbose = TRUE + javastics = javastics_path, + workspace = javastics_workspace_path, + out_dir = stics_inputs_path, + verbose = TRUE ) ## Create synthetic observations - model_options <- SticsOnR::stics_wrapper_options(javastics = javastics_path, workspace = stics_inputs_path, parallel = FALSE) - tmp <- SticsOnR::stics_wrapper(model_options = model_options, param_values = c(dlaimax = 0.0012), var = "lai_n", situation = "bo96iN+") + model_options <- SticsOnR::stics_wrapper_options( + javastics = javastics_path, + workspace = stics_inputs_path, + parallel = FALSE + ) + tmp <- SticsOnR::stics_wrapper( + model_options = model_options, + param_values = c(dlaimax = 0.0012), + var = "lai_n", + situation = "bo96iN+" + ) obs_synth <<- tmp$sim_list obs_synth[["bo96iN+"]] <- obs_synth[["bo96iN+"]] %>% dplyr::mutate(laiX2 = lai_n * 2) %>% @@ -324,7 +417,10 @@ test_that("Test var argument and init values are taken into account", { dplyr::slice(seq(1, nrow(.), by = 2)) transform_sim <- function(model_results, ...) { - model_results$sim_list$`bo96iN+` <- dplyr::mutate(model_results$sim_list$`bo96iN+`, laiX2 = lai_n * 2) + model_results$sim_list$`bo96iN+` <- dplyr::mutate( + model_results$sim_list$`bo96iN+`, + laiX2 = lai_n * 2 + ) return(model_results) } @@ -334,48 +430,90 @@ test_that("Test var argument and init values are taken into account", { ub = c(dlaimax = 0.0020), init_values = data.frame(dlaimax = c(0.0005, 0.0017)) ) - optim_options <- list(nb_rep = 3, maxeval = 15, xtol_rel = 1e-01, ranseed = 1234) + optim_options <- list( + nb_rep = 3, + maxeval = 15, + xtol_rel = 1e-01, + ranseed = 1234 + ) optim_results <- estim_param( obs_list = obs_synth, crit_function = crit_ols, model_function = SticsOnR::stics_wrapper, model_options = model_options, optim_options = optim_options, - param_info = param_info, transform_sim = transform_sim, + param_info = param_info, + transform_sim = transform_sim, var_to_simulate = "lai_n", - info_level = 4, info_crit_func = NULL, + info_level = 4, + info_crit_func = NULL, out_dir = file.path(getwd(), "Test_var_and_init") ) - expect_equal(optim_results$final_values[["dlaimax"]], 0.0012, tolerance = 1e-4) - expect_equal(optim_results$init_values[1:2, ], as.numeric(param_info$init_values[1:2, ])) + expect_equal( + optim_results$final_values[["dlaimax"]], + 0.0012, + tolerance = 1e-4 + ) + expect_equal( + optim_results$init_values[1:2, ], + as.numeric(param_info$init_values[1:2, ]) + ) expect_false(identical(optim_results$sim_intersect, optim_results$sim)) expect_false(identical(optim_results$sim_transformed, optim_results$sim)) - expect_false(identical(optim_results$sim_transformed, optim_results$sim_intersect)) - expect_true(!is.null(optim_results$sim) && !is.null(optim_results$sim_intersect) && - !is.null(optim_results$sim_transformed) && !is.null(optim_results$obs_intersect)) + expect_false(identical( + optim_results$sim_transformed, + optim_results$sim_intersect + )) + expect_true( + !is.null(optim_results$sim) && + !is.null(optim_results$sim_intersect) && + !is.null(optim_results$sim_transformed) && + !is.null(optim_results$obs_intersect) + ) expect_equal(unique(optim_results$params_and_crit$rep), c(1, 2, 3)) - expect_true(length(optim_results$sim) == 45 && length(optim_results$sim_intersect) == 45 && - length(optim_results$sim_transformed) == 45 && length(optim_results$obs_intersect) == 45) + expect_true( + length(optim_results$sim) == 45 && + length(optim_results$sim_intersect) == 45 && + length(optim_results$sim_transformed) == 45 && + length(optim_results$obs_intersect) == 45 + ) }) ## Same but with optim package test_that("Test var and transform_sim arguments with optim", { - javastics_path <- file.path(system.file("stics", package = "SticsRTests"), stics_version) - data_dir <- file.path(SticsRFiles::download_data(example_dirs = "study_case_1", stics_version = stics_version)) + javastics_path <- file.path( + system.file("stics", package = "SticsRTests"), + stics_version + ) + data_dir <- file.path(SticsRFiles::download_data( + example_dirs = "study_case_1", + stics_version = stics_version + )) javastics_workspace_path <- file.path(data_dir, "XmlFiles") stics_inputs_path <- file.path(data_dir, "TxtFiles") dir.create(stics_inputs_path, showWarnings = FALSE) SticsRFiles::gen_usms_xml2txt( - javastics = javastics_path, workspace = javastics_workspace_path, - out_dir = stics_inputs_path, verbose = TRUE + javastics = javastics_path, + workspace = javastics_workspace_path, + out_dir = stics_inputs_path, + verbose = TRUE ) ## Create synthetic observations - model_options <- SticsOnR::stics_wrapper_options(javastics = javastics_path, workspace = stics_inputs_path, parallel = FALSE) - tmp <- SticsOnR::stics_wrapper(model_options = model_options, param_values = c(dlaimax = 0.0012), var = "lai_n", situation = "bo96iN+") + model_options <- SticsOnR::stics_wrapper_options( + javastics = javastics_path, + workspace = stics_inputs_path, + parallel = FALSE + ) + tmp <- SticsOnR::stics_wrapper( + model_options = model_options, + param_values = c(dlaimax = 0.0012), + var = "lai_n", + situation = "bo96iN+" + ) obs_synth <<- tmp$sim_list obs_synth[["bo96iN+"]] <- obs_synth[["bo96iN+"]] %>% dplyr::mutate(laiX2 = lai_n * 2) %>% @@ -383,7 +521,10 @@ test_that("Test var and transform_sim arguments with optim", { dplyr::slice(seq(1, nrow(.), by = 2)) transform_sim <- function(model_results, ...) { - model_results$sim_list$`bo96iN+` <- dplyr::mutate(model_results$sim_list$`bo96iN+`, laiX2 = lai_n * 2) + model_results$sim_list$`bo96iN+` <- dplyr::mutate( + model_results$sim_list$`bo96iN+`, + laiX2 = lai_n * 2 + ) return(model_results) } @@ -401,12 +542,20 @@ test_that("Test var and transform_sim arguments with optim", { model_function = SticsOnR::stics_wrapper, model_options = model_options, optim_options = optim_options, - param_info = param_info, transform_sim = transform_sim, + param_info = param_info, + transform_sim = transform_sim, var_to_simulate = "lai_n", out_dir = file.path(getwd(), "Test_var_and_init_optim") ) - expect_equal(optim_results$final_values[["dlaimax"]], 0.0012, tolerance = 1e-4) - expect_equal(optim_results$init_values[1:2, ], as.numeric(param_info$init_values[1:2, ])) + expect_equal( + optim_results$final_values[["dlaimax"]], + 0.0012, + tolerance = 1e-4 + ) + expect_equal( + optim_results$init_values[1:2, ], + as.numeric(param_info$init_values[1:2, ]) + ) }) @@ -418,39 +567,59 @@ test_that("Test var and transform_sim arguments with optim", { # value of dlaimax + estimated values of dlaimax from same starting points but with 2 different # forced values of durvieF should give quite different results). - test_that("Test forced_param_values argument", { - javastics_path <- file.path(system.file("stics", package = "SticsRTests"), stics_version) - data_dir <- file.path(SticsRFiles::download_data(example_dirs = "study_case_1", stics_version = stics_version)) + javastics_path <- file.path( + system.file("stics", package = "SticsRTests"), + stics_version + ) + data_dir <- file.path(SticsRFiles::download_data( + example_dirs = "study_case_1", + stics_version = stics_version + )) javastics_workspace_path <- file.path(data_dir, "XmlFiles") stics_inputs_path <- file.path(data_dir, "TxtFiles") dir.create(stics_inputs_path, showWarnings = FALSE) SticsRFiles::gen_usms_xml2txt( - javastics = javastics_path, workspace = javastics_workspace_path, - out_dir = stics_inputs_path, verbose = TRUE + javastics = javastics_path, + workspace = javastics_workspace_path, + out_dir = stics_inputs_path, + verbose = TRUE ) ## Create synthetic observations - model_options <- SticsOnR::stics_wrapper_options(javastics = javastics_path, workspace = stics_inputs_path, parallel = FALSE) + model_options <- SticsOnR::stics_wrapper_options( + javastics = javastics_path, + workspace = stics_inputs_path, + parallel = FALSE + ) tmp <- SticsOnR::stics_wrapper( - model_options = model_options, param_values = c(dlaimax = 0.0012, durvieF = 100), - var = c("lai_n", "masec_n"), situation = "bo96iN+" + model_options = model_options, + param_values = c(dlaimax = 0.0012, durvieF = 100), + var = c("lai_n", "masec_n"), + situation = "bo96iN+" ) obs_synth <<- tmp$sim_list ## Try to retrieve dlaimax value param_info <- list( lb = c(dlaimax = 0.0005), - ub = c(dlaimax = 0.0020), init_values = c(dlaimax = c(0.001, 0.0011, 0.0013)) + ub = c(dlaimax = 0.0020), + init_values = c(dlaimax = c(0.001, 0.0011, 0.0013)) + ) + optim_options <- list( + nb_rep = 3, + maxeval = 15, + xtol_rel = 1e-01, + ranseed = 1234 ) - optim_options <- list(nb_rep = 3, maxeval = 15, xtol_rel = 1e-01, ranseed = 1234) optim_results1 <- estim_param( obs_list = obs_synth, crit_function = crit_ols, model_function = SticsOnR::stics_wrapper, model_options = model_options, optim_options = optim_options, - param_info = param_info, forced_param_values = c(durvieF = 100), + param_info = param_info, + forced_param_values = c(durvieF = 100), out_dir = file.path(getwd(), "Test_forced_param_values_1") ) optim_results2 <- estim_param( @@ -459,13 +628,19 @@ test_that("Test forced_param_values argument", { model_function = SticsOnR::stics_wrapper, model_options = model_options, optim_options = optim_options, - param_info = param_info, forced_param_values = c(durvieF = 300), + param_info = param_info, + forced_param_values = c(durvieF = 300), out_dir = file.path(getwd(), "Test_forced_param_values_2") ) - expect_equal(optim_results1$final_values[["dlaimax"]], 0.0012, tolerance = 1e-5) + expect_equal( + optim_results1$final_values[["dlaimax"]], + 0.0012, + tolerance = 1e-5 + ) expect_gt( - optim_results1$final_values[["dlaimax"]] - optim_results2$final_values[["dlaimax"]], + optim_results1$final_values[["dlaimax"]] - + optim_results2$final_values[["dlaimax"]], 1e-4 ) }) @@ -474,15 +649,24 @@ test_that("Test forced_param_values argument", { # Test DREAM-ZS takes into account initial values # ----------------------------------------------- - test_that("Test DREAM-ZS takes into account initial values", { - model_options <- SticsOnR::stics_wrapper_options(javastics = javastics_path, workspace = stics_inputs_path, parallel = FALSE) - tmp <- SticsOnR::stics_wrapper(model_options = model_options, param_values = c(dlaimax = 0.0012), var = "lai_n", situation = "bo96iN+") + model_options <- SticsOnR::stics_wrapper_options( + javastics = javastics_path, + workspace = stics_inputs_path, + parallel = FALSE + ) + tmp <- SticsOnR::stics_wrapper( + model_options = model_options, + param_values = c(dlaimax = 0.0012), + var = "lai_n", + situation = "bo96iN+" + ) obs_synth <<- tmp$sim_list param_info <- list( lb = c(dlaimax = 0.0005), - ub = c(dlaimax = 0.0020), init_values = data.frame(dlaimax = c(0.001, 0.0011, 0.0013)) + ub = c(dlaimax = 0.0020), + init_values = data.frame(dlaimax = c(0.001, 0.0011, 0.0013)) ) optim_options <- list() @@ -500,11 +684,13 @@ test_that("Test DREAM-ZS takes into account initial values", { optim_method = "BayesianTools.dreamzs", out_dir = file.path(getwd(), "Test_Dreamzs") ) - expect_equal(optim_results$post_sample[1:2], as.numeric(param_info$init_values[1:2, ])) + expect_equal( + optim_results$post_sample[1:2], + as.numeric(param_info$init_values[1:2, ]) + ) }) - # Test rotations # -------------- # Here we use observations for a given USM (demo_maize3) and try to estimate parameters for another non-observed USM (demo_Wheat1) @@ -518,13 +704,23 @@ test_that("Test rotation", { dir.create(stics_inputs_path, showWarnings = FALSE) SticsRFiles::gen_usms_xml2txt( - javastics = javastics_path, workspace = javastics_workspace_path, - out_dir = stics_inputs_path, usm = c("demo_BareSoil2", "demo_Wheat1", "demo_maize3"), verbose = TRUE + javastics = javastics_path, + workspace = javastics_workspace_path, + out_dir = stics_inputs_path, + usm = c("demo_BareSoil2", "demo_Wheat1", "demo_maize3"), + verbose = TRUE ) - model_options <- SticsOnR::stics_wrapper_options(javastics = javastics_path, workspace = stics_inputs_path, successive = list(c("demo_Wheat1", "demo_BareSoil2", "demo_maize3")), parallel = TRUE) + model_options <- SticsOnR::stics_wrapper_options( + javastics = javastics_path, + workspace = stics_inputs_path, + successive = list(c("demo_Wheat1", "demo_BareSoil2", "demo_maize3")), + parallel = TRUE + ) sim_with_successive <- SticsOnR::stics_wrapper( - model_options = model_options, situation = c("demo_Wheat1", "demo_BareSoil2", "demo_maize3"), var = c("AZnit_1"), + model_options = model_options, + situation = c("demo_Wheat1", "demo_BareSoil2", "demo_maize3"), + var = c("AZnit_1"), param_values = data.frame(situation = c("demo_Wheat1"), durvieF = 350) ) @@ -534,7 +730,12 @@ test_that("Test rotation", { ## Try to retrieve dlaimax value with the standard method param_info <- list() param_info$durvieF <- list(lb = 50, ub = 500, sit_list = list("demo_Wheat1")) - optim_options <- list(nb_rep = 3, maxeval = 15, xtol_rel = 1e-01, ranseed = 1234) + optim_options <- list( + nb_rep = 3, + maxeval = 15, + xtol_rel = 1e-01, + ranseed = 1234 + ) optim_results <- estim_param( obs_list = obs_synth, crit_function = crit_ols, @@ -549,7 +750,6 @@ test_that("Test rotation", { }) - # # Test Vignette DREAM # # ------------------- # TO update when the way of defining initial values will be uniformized in CroptimizR @@ -608,8 +808,6 @@ test_that("Test rotation", { # expect_true(file.exists(file.path(out_dir,"marginalPlots.pdf"))) # }) - - # Test Vignette AgMIP phase III protocol # -------------------------------------- @@ -623,17 +821,26 @@ download.file( ## set the parameters for a run in auto_test mode xfun::gsub_file( file = vignette_rmd, - pattern = "params$eval_auto_test", replacement = "TRUE", fixed = TRUE + pattern = "params$eval_auto_test", + replacement = "TRUE", + fixed = TRUE ) xfun::gsub_file( file = vignette_rmd, - pattern = "params$eval_auto_vignette", replacement = "FALSE", fixed = TRUE + pattern = "params$eval_auto_vignette", + replacement = "FALSE", + fixed = TRUE ) xfun::gsub_file( file = vignette_rmd, - pattern = "params$eval_manual_vignette", replacement = "FALSE", fixed = TRUE + pattern = "params$eval_manual_vignette", + replacement = "FALSE", + fixed = TRUE +) +javastics_path <- file.path( + system.file("stics", package = "SticsRTests"), + stics_version ) -javastics_path <- file.path(system.file("stics", package = "SticsRTests"), stics_version) xfun::gsub_file( file = vignette_rmd, pattern = "params$path_to_JavaStics", @@ -654,21 +861,24 @@ xfun::gsub_file( xfun::gsub_file( file = vignette_rmd, pattern = "list(nb_rep = c(10, 5))", - replacement = "list(nb_rep = 2, maxeval=4)", fixed = TRUE + replacement = "list(nb_rep = 2, maxeval=4)", + fixed = TRUE ) ## adapt the version of the Stics input files to the Stics version used xfun::gsub_file( file = vignette_rmd, pattern = "stics_version = \"V9.0\"", - replacement = paste0("stics_version = \"", stics_version, "\""), fixed = TRUE + replacement = paste0("stics_version = \"", stics_version, "\""), + fixed = TRUE ) ## Fixing cores number for CI context on Github if (Sys.getenv("CI") != "") { xfun::gsub_file( file = vignette_rmd, - "parallel = TRUE, cores = 4", "parallel = TRUE, cores = 2", + "parallel = TRUE, cores = 4", + "parallel = TRUE, cores = 2", fixed = TRUE ) } @@ -676,7 +886,8 @@ if (Sys.getenv("CI") != "") { ## generate the R script knitr::purl( input = vignette_rmd, - output = file.path(tmpdir, "AgMIP_Calibration_Phenology_protocol.R"), documentation = 2 + output = file.path(tmpdir, "AgMIP_Calibration_Phenology_protocol.R"), + documentation = 2 ) ## Seems that optim_options and optim_results.Rdata are not overwritten => try to remove them before run @@ -694,7 +905,11 @@ nlo_new <- lapply(res$nlo, function(x) { x$call <- NULL x }) # remove "call" since it may change between code versions ... -load(system.file(file.path("extdata", "ResAgmipPheno_2rep4it", stics_version), "optim_results.Rdata", package = "CroptimizR")) +load(system.file( + file.path("extdata", "ResAgmipPheno_2rep4it", stics_version), + "optim_results.Rdata", + package = "CroptimizR" +)) nlo <- lapply(res$nlo, function(x) { x$call <- NULL x @@ -715,14 +930,38 @@ test_that("Test Vignette AgMIP Phase III protocol", { ) expect_equal(nlo_new[[1]]$x0, c(138.2656, 506.3340), tolerance = 1e-4) expect_equal(nlo_new[[2]]$x0, c(446.0060, 639.4217), tolerance = 1e-4) - expect_equal(sapply(nlo_new, "[[", "solution"), sapply(nlo, "[[", "solution"), tolerance = 1e-4) - expect_equal(sapply(nlo_new, "[[", "objective"), sapply(nlo, "[[", "objective"), tolerance = 1e-4) + expect_equal( + sapply(nlo_new, "[[", "solution"), + sapply(nlo, "[[", "solution"), + tolerance = 1e-4 + ) + expect_equal( + sapply(nlo_new, "[[", "objective"), + sapply(nlo, "[[", "objective"), + tolerance = 1e-4 + ) expect_true(file.exists(file.path(data_dir, "param_selection_steps.csv"))) for (i in 1:4) { - expect_true(file.exists(file.path(data_dir, paste0("param_select_step", i), "optim_results.Rdata"))) - expect_true(file.exists(file.path(data_dir, paste0("param_select_step", i), "EstimatedVSinit.pdf"))) - expect_true(file.exists(file.path(data_dir, paste0("param_select_step", i), "ValuesVSit.pdf"))) - expect_true(file.exists(file.path(data_dir, paste0("param_select_step", i), "ValuesVSit_2D.pdf"))) + expect_true(file.exists(file.path( + data_dir, + paste0("param_select_step", i), + "optim_results.Rdata" + ))) + expect_true(file.exists(file.path( + data_dir, + paste0("param_select_step", i), + "EstimatedVSinit.pdf" + ))) + expect_true(file.exists(file.path( + data_dir, + paste0("param_select_step", i), + "ValuesVSit.pdf" + ))) + expect_true(file.exists(file.path( + data_dir, + paste0("param_select_step", i), + "ValuesVSit_2D.pdf" + ))) } }) @@ -730,29 +969,49 @@ test_that("Test Vignette AgMIP Phase III protocol", { # Test use of wls criterion # ------------------------- -javastics_path <- file.path(system.file("stics", package = "SticsRTests"), stics_version) -data_dir <- file.path(SticsRFiles::download_data(example_dirs = "study_case_1", stics_version = stics_version)) +javastics_path <- file.path( + system.file("stics", package = "SticsRTests"), + stics_version +) +data_dir <- file.path(SticsRFiles::download_data( + example_dirs = "study_case_1", + stics_version = stics_version +)) javastics_workspace_path <- file.path(data_dir, "XmlFiles") stics_inputs_path <- file.path(data_dir, "TxtFiles") dir.create(stics_inputs_path, showWarnings = FALSE) SticsRFiles::gen_usms_xml2txt( - javastics = javastics_path, workspace = javastics_workspace_path, - out_dir = stics_inputs_path, verbose = TRUE + javastics = javastics_path, + workspace = javastics_workspace_path, + out_dir = stics_inputs_path, + verbose = TRUE ) test_that("Test use of WLS", { ## Create synthetic observations - model_options <- SticsOnR::stics_wrapper_options(javastics = javastics_path, workspace = stics_inputs_path, parallel = FALSE) + model_options <- SticsOnR::stics_wrapper_options( + javastics = javastics_path, + workspace = stics_inputs_path, + parallel = FALSE + ) tmp <- SticsOnR::stics_wrapper( - model_options = model_options, param_values = c(dlaimax = 0.0012), - var = c("lai_n"), situation = "bo96iN+" + model_options = model_options, + param_values = c(dlaimax = 0.0012), + var = c("lai_n"), + situation = "bo96iN+" ) obs_list <- tmp$sim_list param_info <- list( lb = c(dlaimax = 0.0005), - ub = c(dlaimax = 0.0020), init_values = c(dlaimax = c(0.001, 0.0011, 0.0013)) + ub = c(dlaimax = 0.0020), + init_values = c(dlaimax = c(0.001, 0.0011, 0.0013)) + ) + optim_options <- list( + nb_rep = 3, + maxeval = 15, + xtol_rel = 1e-01, + ranseed = 1234 ) - optim_options <- list(nb_rep = 3, maxeval = 15, xtol_rel = 1e-01, ranseed = 1234) ## Try to retrieve dlaimax value using OLS optim_results_ols <- estim_param( @@ -779,15 +1038,21 @@ test_that("Test use of WLS", { out_dir = file.path(getwd(), "Test_wls_crit_2"), info_level = 3 ) - expect_equal(optim_results_ols$final_values[["dlaimax"]], + expect_equal( + optim_results_ols$final_values[["dlaimax"]], optim_results_wls$final_values[["dlaimax"]], tolerance = 1e-5 ) ## Now bias large values of LAI and take them into account or not using the weight ## check that estimated value of dlaimax is correct when weight of large values is set to Inf - tmp$sim_list[["bo96iN+"]]["lai_n"][tmp$sim_list[["bo96iN+"]][["lai_n"]] > 5, ] <- - tmp$sim_list[["bo96iN+"]]["lai_n"][tmp$sim_list[["bo96iN+"]][["lai_n"]] > 5, ] + 3 + tmp$sim_list[["bo96iN+"]]["lai_n"][ + tmp$sim_list[["bo96iN+"]][["lai_n"]] > 5, + ] <- + tmp$sim_list[["bo96iN+"]]["lai_n"][ + tmp$sim_list[["bo96iN+"]][["lai_n"]] > 5, + ] + + 3 obs_list <- tmp$sim_list optim_results_wls1 <- estim_param( @@ -817,12 +1082,14 @@ test_that("Test use of WLS", { out_dir = file.path(getwd(), "Test_wls_crit_4"), info_level = 3 ) - expect_equal(optim_results_ols$final_values[["dlaimax"]], + expect_equal( + optim_results_ols$final_values[["dlaimax"]], optim_results_wls2$final_values[["dlaimax"]], tolerance = 1e-5 ) expect_gt( - optim_results_wls1$final_values[["dlaimax"]] - optim_results_wls2$final_values[["dlaimax"]], + optim_results_wls1$final_values[["dlaimax"]] - + optim_results_wls2$final_values[["dlaimax"]], 1e-4 ) }) @@ -830,18 +1097,30 @@ test_that("Test use of WLS", { ## test incorrect format for weight function test_that("Test use of wls: error is caught for incorrect format of weight", { ## Create synthetic observations - model_options <- SticsOnR::stics_wrapper_options(javastics = javastics_path, workspace = stics_inputs_path, parallel = FALSE) + model_options <- SticsOnR::stics_wrapper_options( + javastics = javastics_path, + workspace = stics_inputs_path, + parallel = FALSE + ) tmp <- SticsOnR::stics_wrapper( - model_options = model_options, param_values = c(dlaimax = 0.0012), - var = c("lai_n"), situation = "bo96iN+" + model_options = model_options, + param_values = c(dlaimax = 0.0012), + var = c("lai_n"), + situation = "bo96iN+" ) obs_list <- tmp$sim_list w0 <- 1 param_info <- list( lb = c(dlaimax = 0.0005), - ub = c(dlaimax = 0.0020), init_values = c(dlaimax = c(0.001, 0.0011, 0.0013)) + ub = c(dlaimax = 0.0020), + init_values = c(dlaimax = c(0.001, 0.0011, 0.0013)) + ) + optim_options <- list( + nb_rep = 3, + maxeval = 15, + xtol_rel = 1e-01, + ranseed = 1234 ) - optim_options <- list(nb_rep = 3, maxeval = 15, xtol_rel = 1e-01, ranseed = 1234) expect_error(suppressWarnings(estim_param( obs_list = obs_list, crit_function = crit_wls, diff --git a/tests/testthat/test-force_param_values.R b/tests/testthat/test-force_param_values.R index bbda872..1cc3e7a 100644 --- a/tests/testthat/test-force_param_values.R +++ b/tests/testthat/test-force_param_values.R @@ -1,25 +1,41 @@ - -#stics_version <- "V9.2" stics_version <- SticsRFiles::get_stics_versions_compat()$latest_version -javastics <- file.path(system.file("stics", package = "SticsRTests"), stics_version) - +javastics <- file.path( + system.file("stics", package = "SticsRTests"), + stics_version +) -path <- SticsRFiles::get_examples_path(file_type = "txt", stics_version = stics_version) +path <- SticsRFiles::get_examples_path( + file_type = "txt", + stics_version = stics_version +) # Copy example to test in tempdir since the files will be modified by set_param -file.copy(from = file.path(path, list.files(path)), to = tempdir(), overwrite = TRUE) +file.copy( + from = file.path(path, list.files(path)), + to = tempdir(), + overwrite = TRUE +) example_txt_dir <- tempdir() #example_txt_dir <- get_examples_path(file_type = "txt", stics_version = stics_version) -res <- SticsRFiles::force_param_values(example_txt_dir, - values = setNames(object = c(220, 330), c("stlevamf", "stamflax")), - javastics = javastics) -df_paramsti <- read.table(file = file.path(example_txt_dir, "param.sti"), stringsAsFactors = FALSE) +res <- SticsRFiles::force_param_values( + example_txt_dir, + values = setNames(object = c(220, 330), c("stlevamf", "stamflax")), + javastics = javastics +) +df_paramsti <- read.table( + file = file.path(example_txt_dir, "param.sti"), + stringsAsFactors = FALSE +) # to be compatible with both STICS V10.0 (codoptim) and previous version (codeoptim) # we search all parameters including the pattern "optim" and then handle both cases in the test -optim_params <- SticsRFiles::get_param_txt(workspace = example_txt_dir, param = "optim", stics_version = stics_version)$usm +optim_params <- SticsRFiles::get_param_txt( + workspace = example_txt_dir, + param = "optim", + stics_version = stics_version +)$usm # getting the parameter name codoptim <- names(optim_params) optim_params <- unlist(optim_params) @@ -32,33 +48,52 @@ test_that("standard case", { }) - -res <- SticsRFiles::force_param_values(example_txt_dir, - values = NA, - javastics = javastics) +res <- SticsRFiles::force_param_values( + example_txt_dir, + values = NA, + javastics = javastics +) test_that("param_values == NA", { expect_equal( - unlist(SticsRFiles::get_param_txt(workspace = example_txt_dir, param = codoptim, stics_version = stics_version), - use.names = FALSE), - 0) + unlist( + SticsRFiles::get_param_txt( + workspace = example_txt_dir, + param = codoptim, + stics_version = stics_version + ), + use.names = FALSE + ), + 0 + ) expect_false(file.exists(file.path(example_txt_dir, "param.sti"))) expect_true(res) }) +res <- suppressWarnings(SticsRFiles::force_param_values( + example_txt_dir, + values = setNames(object = c(220, NA), c("stlevamf", "stamflax")), + javastics = javastics +)) -res <- suppressWarnings(SticsRFiles::force_param_values(example_txt_dir, - values = setNames(object = c(220, NA), - c("stlevamf", "stamflax")), - javastics = javastics)) - -df_paramsti <- read.table(file = file.path(example_txt_dir, "param.sti"), stringsAsFactors = FALSE) +df_paramsti <- read.table( + file = file.path(example_txt_dir, "param.sti"), + stringsAsFactors = FALSE +) test_that("One NA in param_values", { expect_equal( - unlist(SticsRFiles::get_param_txt(workspace = example_txt_dir, param = codoptim, stics_version = stics_version), use.names = FALSE), - 1) + unlist( + SticsRFiles::get_param_txt( + workspace = example_txt_dir, + param = codoptim, + stics_version = stics_version + ), + use.names = FALSE + ), + 1 + ) expect_equal(df_paramsti[c(2), ], c("stlevamf")) expect_equal(as.numeric(df_paramsti[c(1, 3), ]), c(1, 220)) expect_true(res) diff --git a/tests/testthat/test-run_javastics.R b/tests/testthat/test-run_javastics.R index 360b1f0..22d7b8a 100644 --- a/tests/testthat/test-run_javastics.R +++ b/tests/testthat/test-run_javastics.R @@ -1,37 +1,44 @@ - library(SticsRFiles) library(SticsOnR) -stics_version <- "V10.0" +stics_version <- SticsRFiles::get_stics_versions_compat()$latest_version -path_to_JavaStics = system.file("stics", package = "SticsRTests") -javastics = normalizePath(file.path(path_to_JavaStics,stics_version), winslash = "/") +path_to_JavaStics <- system.file("stics", package = "SticsRTests") +javastics = normalizePath( + file.path(path_to_JavaStics, stics_version), + winslash = "/" +) # Define the workspaces --------------------------------------------------- -data_dir = SticsRFiles::download_data(example_dirs="study_case_1", - stics_version = stics_version) +data_dir <- SticsRFiles::download_data( + example_dirs = "study_case_1", + stics_version = stics_version +) workspace = file.path(data_dir, "XmlFiles") # Define the variables to simulate ---------------------------------------- -sim_variables = c("lai(n)","masec(n)") +sim_variables = c("lai(n)", "masec(n)") # Generate the var.mod file: gen_varmod(workspace, sim_variables) # Run the simulations ----------------------------------------------------- # Usms to simul te (you can subset if needed) -usms = get_usms_list(file = file.path(workspace,"usms.xml")) +usms = get_usms_list(file = file.path(workspace, "usms.xml")) usms = usms[1:3] # Standard run ------------------------------------------------------------ test_that("run_javastics works using standard call", { - usms_out = run_javastics(javastics = javastics, - workspace = workspace, - usm = usms, verbose = FALSE) + usms_out = run_javastics( + javastics = javastics, + workspace = workspace, + usm = usms, + verbose = FALSE + ) errored = unlist(lapply(usms_out, function(x) x$error)) expect_true(all(!errored)) @@ -41,38 +48,46 @@ test_that("run_javastics works using standard call", { # Using a custom exe ------------------------------------------------------ custom_stics_exe = - switch (SticsRFiles:::user_os(), - win = "stics_custom.exe", - lin = "stics_custom_lin", - #mac = "stics_custom_mac", + switch( + SticsRFiles:::user_os(), + win = "stics_custom.exe", + lin = "stics_custom_lin", ) test_that("run_javastics works using a custom executable: exe path", { - usms_out = run_javastics(javastics = javastics, - workspace = workspace, - stics_exe = file.path(javastics,"custom_exe",custom_stics_exe), - usm = usms, verbose = FALSE) + usms_out = run_javastics( + javastics = javastics, + workspace = workspace, + stics_exe = file.path(javastics, "custom_exe", custom_stics_exe), + usm = usms, + verbose = FALSE + ) errored = unlist(lapply(usms_out, function(x) x$error)) expect_true(all(!errored)) }) test_that("run_javastics works using a custom executable: exe name", { - usms_out = run_javastics(javastics = javastics, - workspace = workspace, - stics_exe = custom_stics_exe, - usm = usms, verbose = FALSE) + usms_out = run_javastics( + javastics = javastics, + workspace = workspace, + stics_exe = custom_stics_exe, + usm = usms, + verbose = FALSE + ) errored = unlist(lapply(usms_out, function(x) x$error)) expect_true(all(!errored)) }) test_that("run_javastics works using a custom executable: exe label", { - usms_out = run_javastics(javastics = javastics, - workspace = workspace, - stics_exe = paste0("stics_custom_", - SticsRFiles:::user_os()), - usm = usms, verbose = FALSE) + usms_out = run_javastics( + javastics = javastics, + workspace = workspace, + stics_exe = paste0("stics_custom_", SticsRFiles:::user_os()), + usm = usms, + verbose = FALSE + ) errored = unlist(lapply(usms_out, function(x) x$error)) expect_true(all(!errored)) @@ -81,5 +96,4 @@ test_that("run_javastics works using a custom executable: exe label", { # Remove copy of exe: ----------------------------------------------------- -file.remove(file.path(javastics,"bin",custom_stics_exe)) - +file.remove(file.path(javastics, "bin", custom_stics_exe)) diff --git a/tests/testthat/test-stics-wrapper.R b/tests/testthat/test-stics-wrapper.R index 957e6fd..981b77d 100644 --- a/tests/testthat/test-stics-wrapper.R +++ b/tests/testthat/test-stics-wrapper.R @@ -1,6 +1,5 @@ - context("Stics Wrapper") -stics_version <- "V10.1.0" +stics_version <- SticsRFiles::get_stics_versions_compat()$latest_version # fixing the number of cores in the context of Github CI if (Sys.getenv("CI") != "") { @@ -15,17 +14,26 @@ path_to_JavaStics <- system.file("stics", package = "SticsRTests") javastics_path <- file.path(path_to_JavaStics, stics_version) # Download and prepare data -data_dir <- file.path(SticsRFiles::download_data(example_dirs = "study_case_1", stics_version = stics_version)) +data_dir <- file.path(SticsRFiles::download_data( + example_dirs = "study_case_1", + stics_version = stics_version +)) stics_inputs_path <- file.path(data_dir, "TxtFiles") dir.create(stics_inputs_path, showWarnings = FALSE) javastics_workspace_path <- file.path(data_dir, "XmlFiles") SticsRFiles::gen_usms_xml2txt( - javastics = javastics_path, workspace = javastics_workspace_path, - out_dir = stics_inputs_path, verbose = TRUE + javastics = javastics_path, + workspace = javastics_workspace_path, + out_dir = stics_inputs_path, + verbose = TRUE ) # Set options for Stics wrapper -model_options <- SticsOnR::stics_wrapper_options(javastics = javastics_path, workspace = stics_inputs_path, parallel = FALSE) +model_options <- SticsOnR::stics_wrapper_options( + javastics = javastics_path, + workspace = stics_inputs_path, + parallel = FALSE +) # Standard wrapper tests param_names <- c("dlaimax", "durvieF") @@ -36,68 +44,124 @@ res <- CroptimizR::test_wrapper( model_function = SticsOnR::stics_wrapper, model_options = model_options, param_values = param_values, - situation = "bo96iN+", var = "lai_n" + situation = "bo96iN+", + var = "lai_n" ) test_that("Stics Wrapper succeed test_wrapper tests", { + print(res$test_results) expect_true(all(res$test_results)) }) # Test forcing of parameter per situation works -param_values <- data.frame(situation = "bo96iN+", dlaimax = 0.0005, durvieF = 50) -model_options <- SticsOnR::stics_wrapper_options(javastics = javastics_path, workspace = stics_inputs_path, parallel = FALSE) +param_values <- data.frame( + situation = "bo96iN+", + dlaimax = 0.0005, + durvieF = 50 +) +model_options <- SticsOnR::stics_wrapper_options( + javastics = javastics_path, + workspace = stics_inputs_path, + parallel = FALSE +) var_name <- "lai_n" -sim_without_forcing <- SticsOnR::stics_wrapper(model_options = model_options, var = "lai_n", situation = c("bo96iN+", "bou99t1")) -sim_with_forcing <- SticsOnR::stics_wrapper(param_values = param_values, model_options = model_options, var = "lai_n", situation = c("bo96iN+", "bou99t1")) +sim_without_forcing <- SticsOnR::stics_wrapper( + model_options = model_options, + var = var_name, + situation = c("bo96iN+", "bou99t1") +) +sim_with_forcing <- SticsOnR::stics_wrapper( + param_values = param_values, + model_options = model_options, + var = var_name, + situation = c("bo96iN+", "bou99t1") +) test_that("Parameter forcing per situation works", { expect_gt( sum( - abs(sim_with_forcing$sim_list[["bo96iN+"]][, var_name] - - sim_without_forcing$sim_list[["bo96iN+"]][, var_name]), + abs( + sim_with_forcing$sim_list[["bo96iN+"]][[var_name]] - + sim_without_forcing$sim_list[["bo96iN+"]][[var_name]] + ), na.rm = TRUE ), 0 ) - expect_identical(sim_without_forcing$sim_list[["bou99t1"]], sim_with_forcing$sim_list[["bou99t1"]]) + expect_identical( + sim_without_forcing$sim_list[["bou99t1"]], + sim_with_forcing$sim_list[["bou99t1"]] + ) }) # Test selection of results using arguments situation, sit_var_dates_mask, var, dates situation_names <- c("bo96iN+", "lu97iN+") -res <- SticsOnR::stics_wrapper(model_options = model_options, situation = situation_names) +res <- SticsOnR::stics_wrapper( + model_options = model_options, + situation = situation_names +) test_that("Asking results for a list of situation using situation works", { expect_equal(situation_names, names(res$sim_list)) }) situation_names <- c("bo96iN+", "toto", "titi") test_that("Asking results for a non existing USM using situation lead to a warning", { - expect_warning(SticsOnR::stics_wrapper(model_options = model_options, situation = situation_names), regexp = "These USMs will not be simulated") + expect_warning( + SticsOnR::stics_wrapper( + model_options = model_options, + situation = situation_names + ), + regexp = "These USMs will not be simulated" + ) }) obs_list <- SticsRFiles::get_obs(javastics_workspace_path) obs_list[["toto"]] <- obs_list[["bo96iN+"]] test_that("Asking results for a non existing USM using sit_var_dates_mask lead to a warning", { - expect_warning(SticsOnR::stics_wrapper(model_options = model_options, sit_var_dates_mask = obs_list), regexp = "These USMs will not be simulated") + expect_warning( + SticsOnR::stics_wrapper( + model_options = model_options, + sit_var_dates_mask = obs_list + ), + regexp = "These USMs will not be simulated" + ) }) obs_list <- SticsRFiles::get_obs(javastics_workspace_path) obs_list[["bo96iN+"]] <- NULL -res <- SticsOnR::stics_wrapper(model_options = model_options, sit_var_dates_mask = obs_list) +res <- SticsOnR::stics_wrapper( + model_options = model_options, + sit_var_dates_mask = obs_list +) test_that("Asking results for a list of variables / dates using sit_var_dates_mask works", { expect_equal(names(obs_list), names(res$sim_list)) expect_equal(names(obs_list$`lu97iN+`), names(res$sim_list$`lu97iN+`)) expect_equal(obs_list$`lu97iN+`$Date, res$sim_list$`lu97iN+`$Date) }) var_list <- c("mafruit", "lai_n", "masec_n") -res <- SticsOnR::stics_wrapper(model_options = model_options, situation = "lu97iN+", var = var_list) +res <- SticsOnR::stics_wrapper( + model_options = model_options, + situation = "lu97iN+", + var = var_list +) test_that("Asking results for a list of variables using var works", { - expect_equal(sort(var_list), sort(setdiff(names(res$sim_list$`lu97iN+`), c("Plant", "Date")))) # tail is used to remove Date, ian, mo, jo, jul column in sim + expect_equal( + sort(var_list), + sort(setdiff(names(res$sim_list$`lu97iN+`), c("Plant", "Date"))) + ) # tail is used to remove Date, ian, mo, jo, jul column in sim }) var_list_parenthesis <- c("mafruit", "lai(n)", "masec(n)") var_list <- c("mafruit", "lai_n", "masec_n") -res <- SticsOnR::stics_wrapper(model_options = model_options, situation = "lu97iN+", var = var_list_parenthesis) +res <- SticsOnR::stics_wrapper( + model_options = model_options, + situation = "lu97iN+", + var = var_list_parenthesis +) test_that("Asking results for a list of variables with parenthesis in the name works", { - expect_equal(sort(var_list), sort(setdiff(names(res$sim_list$`lu97iN+`), c("Plant", "Date")))) # tail is used to remove Date, ian, mo, jo, jul column in sim + expect_equal( + sort(var_list), + sort(setdiff(names(res$sim_list$`lu97iN+`), c("Plant", "Date"))) + ) # tail is used to remove Date, ian, mo, jo, jul column in sim }) # To uncomment when check of existence of stics variable will be implemented @@ -106,13 +170,24 @@ test_that("Asking results for a list of variables with parenthesis in the name w # expect_warning(SticsOnR::stics_wrapper(model_options = model_options, situation="lu97iN+", var = var_list), regexp="not simulated by the Stics model") # }) dates <- obs_list$`lu97iN+`$Date -res <- SticsOnR::stics_wrapper(model_options = model_options, situation = "lu97iN+", dates = dates) +res <- SticsOnR::stics_wrapper( + model_options = model_options, + situation = "lu97iN+", + dates = dates +) test_that("Asking results for a list of Dates using dates argument works", { expect_equal(obs_list$`lu97iN+`$Date, res$sim_list$`lu97iN+`$Date) }) dates <- c("01/01/2034") test_that("Asking results for a non-simulated date lead to a warning", { - expect_warning(SticsOnR::stics_wrapper(model_options = model_options, situation = "lu97iN+", dates = dates), regexp = "Not any requested date") + expect_warning( + SticsOnR::stics_wrapper( + model_options = model_options, + situation = "lu97iN+", + dates = dates + ), + regexp = "Not any requested date" + ) }) @@ -131,16 +206,24 @@ test_that("Asking results for a non-simulated date lead to a warning", { # 0) # }) - # Test wrong model path lead to an error test_that("Wrong model path lead to an error", { - expect_error(SticsOnR::stics_wrapper_options(javastics = "", workspace = stics_inputs_path)) - expect_error(SticsOnR::stics_wrapper_options(javastics = paste0(stics_path, "ugly_suffix"), workspace = stics_inputs_path)) + expect_error(SticsOnR::stics_wrapper_options( + javastics = "", + workspace = stics_inputs_path + )) + expect_error(SticsOnR::stics_wrapper_options( + javastics = paste0(stics_path, "ugly_suffix"), + workspace = stics_inputs_path + )) }) # Test unexisting data path lead to an error test_that("Unexisting data path lead to an error", { - expect_error(SticsOnR::stics_wrapper_options(javastics = stics_path, workspace = paste0(stics_inputs_path, "ugly_suffix"))) + expect_error(SticsOnR::stics_wrapper_options( + javastics = stics_path, + workspace = paste0(stics_inputs_path, "ugly_suffix") + )) }) @@ -149,17 +232,26 @@ test_that("Unexisting data path lead to an error", { javastics_workspace_path <- file.path(javastics_path, "example") ## Generate Stics input files from JavaStics input files -stics_inputs_path <- normalizePath(file.path(tempdir(), "RotationTests"), winslash = "/", mustWork = FALSE) +stics_inputs_path <- normalizePath( + file.path(tempdir(), "RotationTests"), + winslash = "/", + mustWork = FALSE +) dir.create(stics_inputs_path, showWarnings = FALSE) SticsRFiles::gen_usms_xml2txt( - javastics = javastics_path, workspace = javastics_workspace_path, + javastics = javastics_path, + workspace = javastics_workspace_path, out_dir = stics_inputs_path, - usm = c("demo_BareSoil2", "demo_Wheat1", "banana", "demo_maize3"), verbose = TRUE + usm = c("demo_BareSoil2", "demo_Wheat1", "banana", "demo_maize3"), + verbose = TRUE ) model_options <- SticsOnR::stics_wrapper_options( - javastics = javastics_path, workspace = stics_inputs_path, parallel = TRUE, cores = cores + javastics = javastics_path, + workspace = stics_inputs_path, + parallel = TRUE, + cores = cores ) sim_without_successive <- SticsOnR::stics_wrapper( model_options = model_options, @@ -167,58 +259,121 @@ sim_without_successive <- SticsOnR::stics_wrapper( ) model_options <- SticsOnR::stics_wrapper_options( - javastics = javastics_path, workspace = stics_inputs_path, successive = list(c("demo_Wheat1", "demo_BareSoil2", "demo_maize3")), parallel = TRUE, cores = cores + javastics = javastics_path, + workspace = stics_inputs_path, + successive = list(c("demo_Wheat1", "demo_BareSoil2", "demo_maize3")), + parallel = TRUE, + cores = cores ) sim_with_successive <- SticsOnR::stics_wrapper( model_options = model_options, var = c("lai_n", "masec_n", "azomes", "resmes") ) -model_options <- SticsOnR::stics_wrapper_options(javastics = javastics_path, workspace = stics_inputs_path, successive = list(c("demo_Wheat1", "demo_BareSoil2", "demo_maize3")), parallel = TRUE, cores = cores) +model_options <- SticsOnR::stics_wrapper_options( + javastics = javastics_path, + workspace = stics_inputs_path, + successive = list(c("demo_Wheat1", "demo_BareSoil2", "demo_maize3")), + parallel = TRUE, + cores = cores +) sim_with_successive_restricted_results <- SticsOnR::stics_wrapper( - model_options = model_options, situation = c("banana", "demo_maize3"), + model_options = model_options, + situation = c("banana", "demo_maize3"), var = c("lai_n", "masec_n", "azomes", "resmes") ) -maize_succ_res <- file(file.path(stics_inputs_path, "demo_maize3", "mod_bdemo_maize3.sti"), "rb") +maize_succ_res <- file( + file.path(stics_inputs_path, "demo_maize3", "mod_bdemo_maize3.sti"), + "rb" +) nb_grep_maize <- grep("rotation", readLines(maize_succ_res)) -baresoil_succ_res <- file(file.path(stics_inputs_path, "demo_BareSoil2", "mod_bdemo_BareSoil2.sti"), "rb") +baresoil_succ_res <- file( + file.path(stics_inputs_path, "demo_BareSoil2", "mod_bdemo_BareSoil2.sti"), + "rb" +) nb_grep_baresoil <- grep("rotation", readLines(baresoil_succ_res)) test_that("Test rotation", { - expect_true(any(grepl("rotation", readLines(file(file.path(stics_inputs_path, "demo_BareSoil2", "mod_bdemo_BareSoil2.sti"), "rb"))))) - expect_true(any(grepl("rotation", readLines(file(file.path(stics_inputs_path, "demo_maize3", "mod_bdemo_maize3.sti"), "rb"))))) - expect_identical(sim_with_successive$sim_list$banana, sim_without_successive$sim_list$banana) - expect_identical(sim_with_successive$sim_list$demo_Wheat1, sim_without_successive$sim_list$demo_Wheat1) - expect_false(identical(sim_with_successive$sim_list$demo_BareSoil2, sim_without_successive$sim_list$demo_BareSoil2)) - expect_false(identical(sim_with_successive$sim_list$demo_maize3, sim_without_successive$sim_list$demo_maize3)) - expect_identical(names(sim_with_successive_restricted_results$sim_list), c("banana", "demo_maize3")) - expect_identical(sim_with_successive_restricted_results$sim_list$demo_maize3, sim_with_successive$sim_list$demo_maize3) + expect_true(any(grepl( + "rotation", + readLines(file( + file.path(stics_inputs_path, "demo_BareSoil2", "mod_bdemo_BareSoil2.sti"), + "rb" + )) + ))) + expect_true(any(grepl( + "rotation", + readLines(file( + file.path(stics_inputs_path, "demo_maize3", "mod_bdemo_maize3.sti"), + "rb" + )) + ))) + expect_identical( + sim_with_successive$sim_list$banana, + sim_without_successive$sim_list$banana + ) + expect_identical( + sim_with_successive$sim_list$demo_Wheat1, + sim_without_successive$sim_list$demo_Wheat1 + ) + expect_false(identical( + sim_with_successive$sim_list$demo_BareSoil2, + sim_without_successive$sim_list$demo_BareSoil2 + )) + expect_false(identical( + sim_with_successive$sim_list$demo_maize3, + sim_without_successive$sim_list$demo_maize3 + )) + expect_identical( + names(sim_with_successive_restricted_results$sim_list), + c("banana", "demo_maize3") + ) + expect_identical( + sim_with_successive_restricted_results$sim_list$demo_maize3, + sim_with_successive$sim_list$demo_maize3 + ) expect_true(length(nb_grep_maize) > 0) expect_true(length(nb_grep_baresoil) > 0) }) - # Test intercrops javastics_workspace_path <- file.path(javastics_path, "example") ## Generate Stics input files from JavaStics input files -stics_inputs_path <- normalizePath(file.path(tempdir(), "IntercropTests"), winslash = "/", mustWork = FALSE) +stics_inputs_path <- normalizePath( + file.path(tempdir(), "IntercropTests"), + winslash = "/", + mustWork = FALSE +) dir.create(stics_inputs_path, showWarnings = FALSE) SticsRFiles::gen_usms_xml2txt( - javastics = javastics_path, workspace = javastics_workspace_path, + javastics = javastics_path, + workspace = javastics_workspace_path, out_dir = stics_inputs_path, - usm = c("intercrop_pea_barley"), verbose = TRUE + usm = c("intercrop_pea_barley"), + verbose = TRUE ) # Set options for Stics wrapper -model_options <- SticsOnR::stics_wrapper_options(javastics = javastics_path, workspace = stics_inputs_path, parallel = FALSE) -sim_intercrop <- SticsOnR::stics_wrapper(model_options = model_options, situation = c("intercrop_pea_barley")) +model_options <- SticsOnR::stics_wrapper_options( + javastics = javastics_path, + workspace = stics_inputs_path, + parallel = FALSE +) +sim_intercrop <- SticsOnR::stics_wrapper( + model_options = model_options, + situation = c("intercrop_pea_barley") +) test_that("Test rotation", { - expect_true(length(unique(sim_intercrop$sim_list$intercrop_pea_barley$Plant)) > 1) - expect_true(length(unique(sim_intercrop$sim_list$intercrop_pea_barley$Dominance)) > 1) + expect_true( + length(unique(sim_intercrop$sim_list$intercrop_pea_barley$Plant)) > 1 + ) + expect_true( + length(unique(sim_intercrop$sim_list$intercrop_pea_barley$Dominance)) > 1 + ) }) diff --git a/tests/testthat/test-tutorial.R b/tests/testthat/test-tutorial.R index 31567c8..fe3fc42 100644 --- a/tests/testthat/test-tutorial.R +++ b/tests/testthat/test-tutorial.R @@ -1,7 +1,5 @@ -options(warn=-1) +options(warn = -1) -# import::from(xfun, xfun::gsub_file) -# import::from(knitr, purl) library(xfun) library(knitr) @@ -13,86 +11,100 @@ tutorial_rmd <- normalizePath( # Making a copy of the tutorial tutorial_test_rmd <- "SticsRpacks_test.Rmd" -file.copy(from = tutorial_rmd, - to = tutorial_test_rmd) +file.copy(from = tutorial_rmd, to = tutorial_test_rmd) # gsub some parts of the tutorial for activating chunks evaluation # and masking some functions return objects -xfun::gsub_file(file = tutorial_test_rmd, - "eval=FALSE","eval=TRUE", - fixed = TRUE) -xfun::gsub_file(file = tutorial_test_rmd, - "optim_options = list(nb_rep = 3, out_dir = workspace_path)", - "optim_options = list(nb_rep = 3, out_dir = workspace_path, maxeval = 3)", - fixed = TRUE) +# substitute the dowload url of the latest version of JavaStics +xfun::gsub_file( + file = tutorial_test_rmd, + "download_url <-.*", + "download_url <- \"https://w3.avignon.inrae.fr/forge/attachments/download/3709/JavaSTICS-latest.zip\"", + fixed = FALSE +) + +xfun::gsub_file( + file = tutorial_test_rmd, + "eval=FALSE", + "eval=TRUE", + fixed = TRUE +) + +xfun::gsub_file( + file = tutorial_test_rmd, + "optim_options = list(nb_rep = 3, out_dir = workspace_path)", + "optim_options = list(nb_rep = 3, out_dir = workspace_path, maxeval = 3)", + fixed = TRUE +) if (Sys.getenv("CI") != "") { - xfun::gsub_file(file = tutorial_test_rmd, - "parallel = TRUE","parallel = TRUE, cores = 2", - fixed = TRUE) + xfun::gsub_file( + file = tutorial_test_rmd, + "parallel = TRUE", + "parallel = TRUE, cores = 2", + fixed = TRUE + ) } # removing outputs from get_sim -xfun::gsub_file(file = tutorial_test_rmd, - "get_sim(workspace = workspace_path)", - "x <- get_sim(workspace = workspace_path)", - fixed = TRUE) - -xfun::gsub_file(file = tutorial_test_rmd, - 'get_sim(workspace = workspace_path, usm = c("banana", "Turmeric"))', - 'x <- get_sim(workspace = workspace_path, usm = c("banana", "Turmeric"))', - fixed = TRUE) - -xfun::gsub_file(file = tutorial_test_rmd, - 'get_sim(workspace = workspace_path, usm = c("wheat", "maize"), var = "lai_n")', - 'x <- get_sim(workspace = workspace_path, usm = c("wheat", "maize"), var = "lai_n")', - fixed = TRUE) - -xfun::gsub_file(file = tutorial_test_rmd, - "print(sim)", - "", - fixed = TRUE) - -xfun::gsub_file(file = tutorial_test_rmd, - "print(p)", - "", - fixed = TRUE) - - -xfun::gsub_file(file = tutorial_test_rmd, - "print(res1)", - "", - fixed = TRUE) - -xfun::gsub_file(file = tutorial_test_rmd, - "print(res2)", - "", - fixed = TRUE) +xfun::gsub_file( + file = tutorial_test_rmd, + "get_sim(workspace = workspace_path)", + "x <- get_sim(workspace = workspace_path)", + fixed = TRUE +) + +xfun::gsub_file( + file = tutorial_test_rmd, + 'get_sim(workspace = workspace_path, usm = c("banana", "Turmeric"))', + 'x <- get_sim(workspace = workspace_path, usm = c("banana", "Turmeric"))', + fixed = TRUE +) + +xfun::gsub_file( + file = tutorial_test_rmd, + 'get_sim(workspace = workspace_path, usm = c("wheat", "maize"), var = "lai_n")', + 'x <- get_sim(workspace = workspace_path, usm = c("wheat", "maize"), var = "lai_n")', + fixed = TRUE +) + +xfun::gsub_file(file = tutorial_test_rmd, "print(sim)", "", fixed = TRUE) + +xfun::gsub_file(file = tutorial_test_rmd, "print(p)", "", fixed = TRUE) + + +xfun::gsub_file(file = tutorial_test_rmd, "print(res1)", "", fixed = TRUE) + +xfun::gsub_file(file = tutorial_test_rmd, "print(res2)", "", fixed = TRUE) # Creating a R script from the tutorial Rmd file tutorial_test_r <- "tutorial_test.R" -knitr::purl(input = tutorial_test_rmd, - output = tutorial_test_r, - documentation = 2) +knitr::purl( + input = tutorial_test_rmd, + output = tutorial_test_r, + documentation = 2 +) # Running the Tutorial script for # Default use case with downloading JavaStics from the forge test_tuto_download_javastics <- function() { - javastics_in_path <- Sys.setenv(javastics_path="") + javastics_in_path <- Sys.setenv(javastics_path = "") source(tutorial_test_r) - return (TRUE) + return(TRUE) } # Local JavaStics installation use case test_tuto_local_javastics <- function() { version <- get_stics_versions_compat()$latest_version - javastics_path <- system.file(paste0("stics/", version), - package = "SticsRTests") + javastics_path <- system.file( + paste0("stics/", version), + package = "SticsRTests" + ) Sys.setenv(javastics_path = javastics_path) source(tutorial_test_r) - return (TRUE) + return(TRUE) } test_that("Test Tutorial", { diff --git a/tutorial_test.R b/tutorial_test.R deleted file mode 100644 index 3d75e6f..0000000 --- a/tutorial_test.R +++ /dev/null @@ -1,166 +0,0 @@ -#' --- -#' title: "Tutorial for SticsRPacks" -#' output: -#' learnr::tutorial: -#' theme: lumen -#' ace_theme: xcode -#' progressive: false -#' allow_skip: true -#' df_print: "paged" -#' toc: true -#' toc_depth: 4 -#' allow_hide: true -#' clean: true -#' description: "A tutorial to learn SticsRPacks" -#' runtime: shiny_prerendered -#' editor_options: -#' markdown: -#' wrap: sentence -#' --- -#' -## ----setup, include=FALSE--------------------------------------------------------------------------------------------------------------------------------------------- -library(learnr) -library(SticsRPacks) -library(dplyr) -library(tidyr) -library(ggplot2) - -# function for displaying functions help -display_help <- function(subject, pkg = NULL) { - tc <- textConnection("s", "w", local = TRUE) - tools:::Rd2HTML(utils:::.getHelpFile(help(subject, (pkg))), out = tc) - knitr::asis_output(htmltools::htmlPreserve(s)) -} - -# function for extracting stics_version from version -# information returned by the stics executable through SticsOnR::check_stics_exe -get_stics_version <- function(version_string) { - # Extract the version number from the string - gsub( - pattern = "([a-z]*[_]{0,1}[v|V]*)([0-9]{1,}.[0-9]{1,}.[0-9]{1,})(_)([0-9-]*)", - x = version_string, - replacement = "\\2" - ) -} -# for simplifying use -get_version_num <- SticsRFiles:::get_version_num - -# removing warnings in chunks -knitr::opts_chunk$set(warning = FALSE) - -options(stringsAsFactors = FALSE) - -tutorial_options(exercise.lines = 5, exercise.timelimit = 300) - -# OS specific parameters -linux <- SticsRFiles:::is_unix() -attributes(linux) <- NULL - -#-------------------------------------------------------------------------- -# Prior to getting this environment variable put it in -# a .Renviron file (in user base directory: Documents for windows, -# /home/username) -# usethis::edit_r_environ() may be used to edit the file -# In any case the R session must be restarted to take effect -#-------------------------------------------------------------------------- - -# Detecting which JavaStics to use: local specific version or -# the latest version downloaded from -# https://w3.avignon.inrae.fr/forge -# -javastics_in_path <- Sys.getenv("javastics_path") -local_javastics <- !(javastics_in_path == "") - -work_dir <- file.path( - normalizePath(dirname(tempdir()), winslash = "/"), - "SticsRPacks" -) - -tmp_dir <- file.path(work_dir, "tmp") - -# For avoiding problems under windows -# with spaces in user dir path -if (.Platform$OS.type == "windows") { - work_dir <- shortPathName(work_dir) -} -# Replacing Windows double backslash file separator with slash -work_dir <- gsub(pattern = "\\\\", replacement = "/", x = work_dir) - -# Creating work_dir if needed -if (!dir.exists(work_dir)) { - dir.create(work_dir) -} -# Creating a tmp dir or emptying it if it exists -if (!dir.exists(tmp_dir)) { - dir.create(tmp_dir) -} else { - tmp_files <- list.files( - path = tmp_dir, - pattern = "\\.RData$", - full.names = TRUE - ) - file.remove(tmp_files) -} - - -if (!local_javastics) { - stics_version <- "latest" - download_url <- "https://w3.avignon.inrae.fr/forge/attachments/download/3651/JavaSTICS-latest.zip" - - javastics_path <- SticsRPacks:::download_javastics( - download_url = download_url, - output_dir = work_dir - ) - - workspace_path <- file.path(javastics_path, "example", fsep = "/") - - workspace_PW1 <- "tutorials/SticsRpacks/PW1_V10" - - # getting java version from jre embedded in JavaSTICS - java_target <- SticsRPacks:::get_javastics_java_version(javastics_path) -} else { - # Check JavaStics in path, got from javastics_path env. variable - if ( - !dir.exists(javastics_in_path) || - !any(grepl("JavaStics.exe", list.files(javastics_in_path))) - ) { - stop( - javastics_in_path, - ": JavaStics directory set in 'javastics_path'\n", - "environment variable does not exist, aborting" - ) - } - - # Using the local JavaStics path - javastics_path <- javastics_in_path - - # Getting exe name - stics_exe_name <- SticsOnR:::list_stics_exe(javastics_path)[[2]][[1]] - - # Getting executable version - check <- try( - SticsOnR:::check_stics_exe( - file.path(javastics_path, "bin", stics_exe_name), - version = TRUE - ), - silent = TRUE - ) - - # Stopping the tutorial when the executable is not found - if (class(check) == "try-error") { - stop( - "The Stics executable (", - stics_exe_name, - ") was not found in JavaStics bin directory: ", - javastics_path - ) - } - - # getting the STICS numerical version - stics_version_string <- attr(check, "version") - stics_version <- get_stics_version(stics_version_string) - - stics_version_num <- SticsRFiles:::get_version_num( - stics_version - ) -}