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Fix human vendored --prune skipping GC (#1127) #3357

Job	Run time
dispatch-tests	-1s
clippy	-1s
e2e-build-windows	-1s
e2e-build	-1s
cargo old toolchains (manifest [patch])	-1s
coverage	-1s
test	-1s
e2e-build-macos	-1s
yarn-classic ${{ matrix.release }}	-1s
test-release	-1s
yarn-berry ${{ matrix.yarn }} (${{ matrix.os }})	-1s
node-addon	-1s
hosted-e2e	-1s
yarn-berry ${{ matrix.yarn }} (${{ matrix.os }})	-1s
docker-base	-1s
e2e-windows	0s
cargo ${{ matrix.toolchain }} lock-v${{ (matrix.lock \|\| 'own') }} (${{ matrix.os }})	0s
ci-ok	3s
yarn-berry ${{ matrix.yarn }} (${{ matrix.os }})	-1s
coverage-docker	0s
e2e-full	0s
e2e-macos	0s
cargo ${{ matrix.toolchain }} lock-v${{ (matrix.lock \|\| 'own') }} (${{ matrix.os }})	0s
e2e	0s
coverage-merge	0s
e2e-docker	0s
cargo ${{ matrix.toolchain }} lock-v${{ (matrix.lock \|\| 'own') }} (${{ matrix.os }})	0s
cargo ${{ matrix.toolchain }} lock-v${{ (matrix.lock \|\| 'own') }} (${{ matrix.os }})	0s
lint-ecosystems	-7s
release-readiness	-10s
	-30s