Adjust CHANGELOG #495
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| name: SAMURAI CI | |
| # This workflow is triggered on pushes and PRs to the repository. | |
| # It runs the `nf-core lint` and markdown lint tests to ensure | |
| # that the code meets the nf-core guidelines. | |
| on: | |
| push: | |
| pull_request: | |
| release: | |
| types: [published] | |
| workflow_dispatch: | |
| inputs: | |
| clean_runner: | |
| description: "Force runner disk cleanup before executing checks" | |
| type: boolean | |
| default: false | |
| env: | |
| NXF_ANSI_LOG: false | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| nf-core: | |
| name: Checks CI | |
| runs-on: ubuntu-latest | |
| env: | |
| RUN_DISK_CLEANUP: ${{ (github.event_name == 'workflow_dispatch' && github.event.inputs.clean_runner == true) || (github.event_name == 'release') || (github.event_name == 'pull_request' && contains(github.event.pull_request.labels.*.name, 'ci:full-clean')) }} | |
| steps: | |
| - name: Check out pipeline code | |
| uses: actions/checkout@08c6903cd8c0fde910a37f88322edcfb5dd907a8 # v5.0.0 | |
| - name: Install Nextflow | |
| uses: nf-core/setup-nextflow@v2.0.0 | |
| with: | |
| version: "24.10.1" | |
| - name: Disk space cleanup | |
| if: ${{ env.RUN_DISK_CLEANUP == 'true' }} | |
| uses: jlumbroso/free-disk-space@v1.3.1 | |
| - name: Run pipeline config and test for syntax errors | |
| run: | | |
| nextflow config -flat . | |
| - name: Run pipeline and test for syntax errors | |
| run: | | |
| nextflow run main.nf --help |