PyStemFinder/pyproject.toml at main · CahanLab/PyStemFinder · GitHub

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[build-system]
requires = ["setuptools>=77"]
build-backend = "setuptools.build_meta"

[project]
name = "pystemfinder"
dynamic = ["version"]
description = "Estimate how differentiated single cells are from heterogeneity in cell cycle gene expression (Python port of stemFinder)"
readme = "README.md"
license = "MIT"
license-files = ["LICENSE"]
authors = [
    { name = "Kathleen Noller" },
    { name = "Patrick Cahan", email = "patrick.cahan@jhmi.edu" },
]
requires-python = ">=3.11"
# Lower bounds are tested by the minimum-versions job in .github/workflows/tests.yml; keep them in sync.
dependencies = [
    "anndata>=0.10",
    "numpy>=1.26",
    "pandas>=2.1",
    "scanpy>=1.10",
    "scipy>=1.11.1",
]
keywords = ["single-cell", "scRNA-seq", "differentiation", "stem cells", "cell cycle", "scanpy", "anndata"]
classifiers = [
    "Development Status :: 4 - Beta",
    "Intended Audience :: Science/Research",
    "Operating System :: OS Independent",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3 :: Only",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
    "Programming Language :: Python :: 3.14",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]

[project.optional-dependencies]
test = ["pytest"]

[project.urls]
Homepage = "https://github.com/CahanLab/PyStemFinder"
Documentation = "https://pystemfinder.readthedocs.io"
Changelog = "https://github.com/CahanLab/PyStemFinder/blob/main/CHANGELOG.md"
Issues = "https://github.com/CahanLab/PyStemFinder/issues"

[tool.setuptools]
packages = ["pystemfinder"]

[tool.setuptools.dynamic]
version = { attr = "pystemfinder._version.__version__" }

[tool.setuptools.package-data]
pystemfinder = ["data/*.txt"]

[tool.pytest.ini_options]
testpaths = ["tests"]